CX306419
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_SHEAM (Coproporphyrinogen-III oxidase, aerobic OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=hemF PE=3 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.001e-33 Identity = 68/157 (43.31%), Postives = 92/157 (58.60%), Query Frame = 3 Query: 87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557 F A G+S V+HPKNP+ PT H N R+F A K+ GA WWFGGG DLTP Y FE DVK +H + K F YP++K+WCD YF++ H FFDDLN ++ + + N + AY PI+E+RKDT + ++ + +Q RRG Sbjct: 88 FEAMGVSLVIHPKNPYIPTTHANVRFFI--ARKE--GADPVWWFGGGFDLTPYYPFESDVKEWHQSAKDLCAPFGNEVYPKYKEWCDKYFFLPHRGETRGVGGLFFDDLNHWEFDKCFDYMQAVGNGFLTAYAPIVERRKDTAYGERERDFQLYRRG 240
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_PSEFS (Coproporphyrinogen-III oxidase, aerobic OS=Pseudomonas fluorescens (strain SBW25) GN=hemF PE=3 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.001e-33 Identity = 67/157 (42.68%), Postives = 91/157 (57.96%), Query Frame = 3 Query: 87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557 F A G+S V+HP NP PT H N R+F + + P WWFGGG DLTP Y EED H+H + A F P Y R+K WCD YF+IKH FFDDLN++D + +F ++ I AY+PI+++RK +T+Q + +Q+ RRG Sbjct: 87 FEALGVSLVIHPHNPHVPTSHANVRFFIAEKEGEEP----VWWFGGGFDLTPYYGNEEDCIHWHRVAEQACAPFGPDVYSRYKAWCDTYFHIKHRNEPRGIGGLFFDDLNEWDFDTCFAFIRAIGDAYIDAYLPIVQRRKAMAYTEQQRQFQEFRRG 239
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_ECO55 (Coproporphyrinogen-III oxidase, aerobic OS=Escherichia coli (strain 55989 / EAEC) GN=hemF PE=3 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.001e-33 Identity = 69/157 (43.95%), Postives = 88/157 (56.05%), Query Frame = 3 Query: 87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557 F A G+S V+HP NP+ PT H N R+F + P GA WWFGGG DLTP Y FEED H+H T + F YPR+KKWCDDYFY+KH F DDLN D + +F AY+PI+E+RK + ++ + +Q RRG Sbjct: 86 FEAMGVSLVVHPHNPYVPTSHANVRFFIAEKP----GAEPVWWFGGGFDLTPFYGFEEDAIHWHRTARDLCLPFGEDVYPRYKKWCDDYFYLKHRNEQRGIGGLFVDDLNTPDFDHCFAFMQAVGKGYTDAYLPIVERRKAMAYGERERNFQLYRRG 238
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_BORPE (Coproporphyrinogen-III oxidase, aerobic OS=Bordetella pertussis GN=hemF PE=3 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 1.708e-33 Identity = 65/157 (41.40%), Postives = 92/157 (58.60%), Query Frame = 3 Query: 93 AAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQ--WWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557 A G+S VLHP+NP+ PT H N R F A PG +WFGGG DLTP Y FE+D +HFH + A D +YPR+K+WCD+YF++KH FFDDLN+ + + +S + AY+PI++ R+D P+ ++ + +Q RRG Sbjct: 89 AMGVSMVLHPRNPYVPTTHMNVRMFVAAA---RPGHAESDVFWFGGGLDLTPYYPFEDDARHFHRACRDALDPHGADYYPRYKQWCDEYFFLKHRNETRGIGGIFFDDLNEPGFDASFALTCSVGDSFLPAYLPIVQARRDMPYGERERDFQAYRRG 242
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_YERE8 (Coproporphyrinogen-III oxidase, aerobic OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=hemF PE=3 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 2.230e-33 Identity = 67/157 (42.68%), Postives = 89/157 (56.69%), Query Frame = 3 Query: 87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557 F A G+S V+HP +P+ PT H N R+F + P + P WWFGGG DLTP Y FEED H+H T + F Y R+KKWCDDYFYIKH FFDDLN D + +F + + AY+PI+ +RK + ++ + +Q RRG Sbjct: 88 FQALGVSLVIHPNSPYLPTSHANVRFFIAEKPDEDP----VWWFGGGFDLTPFYGFEEDAIHWHQTAYNLCQPFGEQLYSRYKKWCDDYFYIKHRNEARGIGGLFFDDLNSPDFDTCFNFTQAVGDGFLDAYMPIVARRKALCWGEREREFQLYRRG 240
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_ECOSE (Coproporphyrinogen-III oxidase, aerobic OS=Escherichia coli (strain SE11) GN=hemF PE=3 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 2.230e-33 Identity = 69/157 (43.95%), Postives = 88/157 (56.05%), Query Frame = 3 Query: 87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557 F A G+S V+HP NP+ PT H N R+F + P GA WWFGGG DLTP Y FEED H+H T + F Y R+KKWCDDYFY+KH FFDDLN D + +F AY+PI+E+RK + ++ + +Q RRG Sbjct: 86 FEAMGVSLVVHPHNPYVPTSHANVRFFIAEKP----GAEPVWWFGGGFDLTPFYGFEEDAIHWHRTARDLCLPFGEDVYLRYKKWCDDYFYLKHRNEQRGIGGLFFDDLNTPDFDHCFAFMQAVGKGYTDAYLPIVERRKAMAYGERERNFQLYRRG 238
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_CITK8 (Coproporphyrinogen-III oxidase, aerobic OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=hemF PE=3 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 2.230e-33 Identity = 67/157 (42.68%), Postives = 88/157 (56.05%), Query Frame = 3 Query: 87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557 F A G+S V+HP NP+ PT H N R+F + P GA WWFGGG DLTP Y FEED H+H T + + YPR+KKWCDDYF++KH FFDDLN D + F A++PI+E+RK + ++ + +Q RRG Sbjct: 86 FEAMGVSLVVHPLNPYIPTSHANVRFFIAEKP----GAEPVWWFGGGFDLTPYYAFEEDAIHWHRTARDLCQPYGEDVYPRYKKWCDDYFFLKHRDEQRGIGGLFFDDLNTPDFDSCFRFMQAVGKGYTDAFLPIVERRKAMVWGERERHFQLYRRG 238
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM61_ANASP (Coproporphyrinogen-III oxidase, aerobic 1 OS=Anabaena sp. (strain PCC 7120) GN=hemF1 PE=3 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 2.230e-33 Identity = 74/183 (40.44%), Postives = 94/183 (51.37%), Query Frame = 3 Query: 87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFD----------------DLNDY----------DQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557 F+A G S VLHP+NP+ PT+H NYRYFE A WWFGGG DLTP Y F ED HFH T K A D+ P +YP FK+WCD+YFY+KH FFD + +Y D E L SF + + AY+PI+E+R + D+ + +Q RRG Sbjct: 76 FYATGTSLVLHPRNPYVPTVHLNYRYFE---------AGPVWWFGGGADLTPYYPFAEDAAHFHQTLKLACDEHHPEYYPVFKRWCDEYFYLKHRDETRGVGGLFFDYQDGQGVLYRGPNPKGEAANYSNQVGEPASRDWEDLFSFIQGSGKAFLPAYVPIVERRHGMEYGDRQRNFQLYRRG 249
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_PHOPR (Coproporphyrinogen-III oxidase, aerobic OS=Photobacterium profundum GN=hemF PE=3 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 3.804e-33 Identity = 64/157 (40.76%), Postives = 90/157 (57.32%), Query Frame = 3 Query: 87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557 F A G+S V+HP NP+ PT H N R+F + + P WWFGGG DLTP Y FEED +H+H+T K F Y + K WCD YF++ H FFDDLN++ E ++ N I Y+PI+++R+DTP+ ++ + +Q RRG Sbjct: 88 FEAMGVSLVIHPNNPYIPTSHANVRFFIAEKEGEAP----VWWFGGGFDLTPFYPFEEDCQHWHNTAKYLCAPFGDDIYEQHKVWCDKYFFLPHRNETRGVGGLFFDDLNEWGFEKSFAYTQAVGNGFIDGYLPIVQRRQDTPYGEREREFQLYRRG 240
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_PHOLL (Coproporphyrinogen-III oxidase, aerobic OS=Photorhabdus luminescens subsp. laumondii GN=hemF PE=3 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 3.804e-33 Identity = 64/155 (41.29%), Postives = 92/155 (59.35%), Query Frame = 3 Query: 93 AAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557 A G+S V+HP NP+ PT H N R+F + + P WWFGGG DLTP Y F+ED H+H+T ++ + YP++K+WCD+YFYIKH F+DDLN D E +F + + AY+PI+EKRK+ + ++ + +Q RRG Sbjct: 90 AMGVSLVIHPLNPYIPTSHANVRFFIAEKEGEAP----VWWFGGGFDLTPYYGFKEDAIHWHTTARNICRPYGEDVYPKYKEWCDNYFYIKHRNEARGIGGLFYDDLNTPDFEHCFNFTQDIGKGFLSAYLPIVEKRKEILWGERERQFQLYRRG 240 The following BLAST results are available for this feature:
BLAST of CX306419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 239
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Sequences
The
following sequences are available for this feature:
EST sequence >CX306419 ID=CX306419; Name=CX306419; organism=Citrus clementina; type=EST; length=558bpback to top |