CX306419

Overview
NameCX306419
Unique NameCX306419
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_SHEAM (Coproporphyrinogen-III oxidase, aerobic OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=hemF PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.001e-33
Identity = 68/157 (43.31%), Postives = 92/157 (58.60%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HPKNP+ PT H N R+F   A K+  GA   WWFGGG DLTP Y FE DVK +H + K     F    YP++K+WCD YF++ H          FFDDLN ++ +    +     N  + AY PI+E+RKDT + ++ + +Q  RRG
Sbjct:   88 FEAMGVSLVIHPKNPYIPTTHANVRFFI--ARKE--GADPVWWFGGGFDLTPYYPFESDVKEWHQSAKDLCAPFGNEVYPKYKEWCDKYFFLPHRGETRGVGGLFFDDLNHWEFDKCFDYMQAVGNGFLTAYAPIVERRKDTAYGERERDFQLYRRG 240          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_PSEFS (Coproporphyrinogen-III oxidase, aerobic OS=Pseudomonas fluorescens (strain SBW25) GN=hemF PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.001e-33
Identity = 67/157 (42.68%), Postives = 91/157 (57.96%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP  PT H N R+F  +   + P     WWFGGG DLTP Y  EED  H+H   + A   F P  Y R+K WCD YF+IKH          FFDDLN++D +   +F     ++ I AY+PI+++RK   +T+Q + +Q+ RRG
Sbjct:   87 FEALGVSLVIHPHNPHVPTSHANVRFFIAEKEGEEP----VWWFGGGFDLTPYYGNEEDCIHWHRVAEQACAPFGPDVYSRYKAWCDTYFHIKHRNEPRGIGGLFFDDLNEWDFDTCFAFIRAIGDAYIDAYLPIVQRRKAMAYTEQQRQFQEFRRG 239          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_ECO55 (Coproporphyrinogen-III oxidase, aerobic OS=Escherichia coli (strain 55989 / EAEC) GN=hemF PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.001e-33
Identity = 69/157 (43.95%), Postives = 88/157 (56.05%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP+ PT H N R+F  + P    GA   WWFGGG DLTP Y FEED  H+H T +     F    YPR+KKWCDDYFY+KH          F DDLN  D +   +F          AY+PI+E+RK   + ++ + +Q  RRG
Sbjct:   86 FEAMGVSLVVHPHNPYVPTSHANVRFFIAEKP----GAEPVWWFGGGFDLTPFYGFEEDAIHWHRTARDLCLPFGEDVYPRYKKWCDDYFYLKHRNEQRGIGGLFVDDLNTPDFDHCFAFMQAVGKGYTDAYLPIVERRKAMAYGERERNFQLYRRG 238          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_BORPE (Coproporphyrinogen-III oxidase, aerobic OS=Bordetella pertussis GN=hemF PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.708e-33
Identity = 65/157 (41.40%), Postives = 92/157 (58.60%), Query Frame = 3
Query:   93 AAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQ--WWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            A G+S VLHP+NP+ PT H N R F   A    PG      +WFGGG DLTP Y FE+D +HFH   + A D     +YPR+K+WCD+YF++KH          FFDDLN+   +   +      +S + AY+PI++ R+D P+ ++ + +Q  RRG
Sbjct:   89 AMGVSMVLHPRNPYVPTTHMNVRMFVAAA---RPGHAESDVFWFGGGLDLTPYYPFEDDARHFHRACRDALDPHGADYYPRYKQWCDEYFFLKHRNETRGIGGIFFDDLNEPGFDASFALTCSVGDSFLPAYLPIVQARRDMPYGERERDFQAYRRG 242          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_YERE8 (Coproporphyrinogen-III oxidase, aerobic OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=hemF PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.230e-33
Identity = 67/157 (42.68%), Postives = 89/157 (56.69%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP +P+ PT H N R+F  + P + P     WWFGGG DLTP Y FEED  H+H T  +    F    Y R+KKWCDDYFYIKH          FFDDLN  D +   +F     +  + AY+PI+ +RK   + ++ + +Q  RRG
Sbjct:   88 FQALGVSLVIHPNSPYLPTSHANVRFFIAEKPDEDP----VWWFGGGFDLTPFYGFEEDAIHWHQTAYNLCQPFGEQLYSRYKKWCDDYFYIKHRNEARGIGGLFFDDLNSPDFDTCFNFTQAVGDGFLDAYMPIVARRKALCWGEREREFQLYRRG 240          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_ECOSE (Coproporphyrinogen-III oxidase, aerobic OS=Escherichia coli (strain SE11) GN=hemF PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.230e-33
Identity = 69/157 (43.95%), Postives = 88/157 (56.05%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP+ PT H N R+F  + P    GA   WWFGGG DLTP Y FEED  H+H T +     F    Y R+KKWCDDYFY+KH          FFDDLN  D +   +F          AY+PI+E+RK   + ++ + +Q  RRG
Sbjct:   86 FEAMGVSLVVHPHNPYVPTSHANVRFFIAEKP----GAEPVWWFGGGFDLTPFYGFEEDAIHWHRTARDLCLPFGEDVYLRYKKWCDDYFYLKHRNEQRGIGGLFFDDLNTPDFDHCFAFMQAVGKGYTDAYLPIVERRKAMAYGERERNFQLYRRG 238          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_CITK8 (Coproporphyrinogen-III oxidase, aerobic OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=hemF PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.230e-33
Identity = 67/157 (42.68%), Postives = 88/157 (56.05%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP+ PT H N R+F  + P    GA   WWFGGG DLTP Y FEED  H+H T +     +    YPR+KKWCDDYF++KH          FFDDLN  D +    F          A++PI+E+RK   + ++ + +Q  RRG
Sbjct:   86 FEAMGVSLVVHPLNPYIPTSHANVRFFIAEKP----GAEPVWWFGGGFDLTPYYAFEEDAIHWHRTARDLCQPYGEDVYPRYKKWCDDYFFLKHRDEQRGIGGLFFDDLNTPDFDSCFRFMQAVGKGYTDAFLPIVERRKAMVWGERERHFQLYRRG 238          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM61_ANASP (Coproporphyrinogen-III oxidase, aerobic 1 OS=Anabaena sp. (strain PCC 7120) GN=hemF1 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.230e-33
Identity = 74/183 (40.44%), Postives = 94/183 (51.37%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFD----------------DLNDY----------DQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F+A G S VLHP+NP+ PT+H NYRYFE         A   WWFGGG DLTP Y F ED  HFH T K A D+  P +YP FK+WCD+YFY+KH          FFD                +  +Y          D E L SF      + + AY+PI+E+R    + D+ + +Q  RRG
Sbjct:   76 FYATGTSLVLHPRNPYVPTVHLNYRYFE---------AGPVWWFGGGADLTPYYPFAEDAAHFHQTLKLACDEHHPEYYPVFKRWCDEYFYLKHRDETRGVGGLFFDYQDGQGVLYRGPNPKGEAANYSNQVGEPASRDWEDLFSFIQGSGKAFLPAYVPIVERRHGMEYGDRQRNFQLYRRG 249          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_PHOPR (Coproporphyrinogen-III oxidase, aerobic OS=Photobacterium profundum GN=hemF PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.804e-33
Identity = 64/157 (40.76%), Postives = 90/157 (57.32%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP+ PT H N R+F  +   + P     WWFGGG DLTP Y FEED +H+H+T K     F    Y + K WCD YF++ H          FFDDLN++  E   ++     N  I  Y+PI+++R+DTP+ ++ + +Q  RRG
Sbjct:   88 FEAMGVSLVIHPNNPYIPTSHANVRFFIAEKEGEAP----VWWFGGGFDLTPFYPFEEDCQHWHNTAKYLCAPFGDDIYEQHKVWCDKYFFLPHRNETRGVGGLFFDDLNEWGFEKSFAYTQAVGNGFIDGYLPIVQRRQDTPYGEREREFQLYRRG 240          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_PHOLL (Coproporphyrinogen-III oxidase, aerobic OS=Photorhabdus luminescens subsp. laumondii GN=hemF PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.804e-33
Identity = 64/155 (41.29%), Postives = 92/155 (59.35%), Query Frame = 3
Query:   93 AAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            A G+S V+HP NP+ PT H N R+F  +   + P     WWFGGG DLTP Y F+ED  H+H+T ++    +    YP++K+WCD+YFYIKH          F+DDLN  D E   +F  +     + AY+PI+EKRK+  + ++ + +Q  RRG
Sbjct:   90 AMGVSLVIHPLNPYIPTSHANVRFFIAEKEGEAP----VWWFGGGFDLTPYYGFKEDAIHWHTTARNICRPYGEDVYPKYKEWCDNYFYIKHRNEARGIGGLFYDDLNTPDFEHCFNFTQDIGKGFLSAYLPIVEKRKEILWGERERQFQLYRRG 240          
The following BLAST results are available for this feature:
BLAST of CX306419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
HEM6_SHEAM1.001e-3343.31Coproporphyrinogen-III oxidase, aerobic OS=Shewane... [more]
HEM6_PSEFS1.001e-3342.68Coproporphyrinogen-III oxidase, aerobic OS=Pseudom... [more]
HEM6_ECO551.001e-3343.95Coproporphyrinogen-III oxidase, aerobic OS=Escheri... [more]
HEM6_BORPE1.708e-3341.40Coproporphyrinogen-III oxidase, aerobic OS=Bordete... [more]
HEM6_YERE82.230e-3342.68Coproporphyrinogen-III oxidase, aerobic OS=Yersini... [more]
HEM6_ECOSE2.230e-3343.95Coproporphyrinogen-III oxidase, aerobic OS=Escheri... [more]
HEM6_CITK82.230e-3342.68Coproporphyrinogen-III oxidase, aerobic OS=Citroba... [more]
HEM61_ANASP2.230e-3340.44Coproporphyrinogen-III oxidase, aerobic 1 OS=Anaba... [more]
HEM6_PHOPR3.804e-3340.76Coproporphyrinogen-III oxidase, aerobic OS=Photoba... [more]
HEM6_PHOLL3.804e-3341.29Coproporphyrinogen-III oxidase, aerobic OS=Photorh... [more]

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Properties
Property NameValue
Genbank descriptionC18017H02Rv Drought1 Citrus clementina cDNA clone C18017H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306419 ID=CX306419; Name=CX306419; organism=Citrus clementina; type=EST; length=558bp
GCGGGGTTGTTTATGGGGTCATGCCTCCTGAAGCTTATAGAGCTGCCAAA
GCTGCTGCTTCTGATGAGAAGCCCGGTCCCATTCCCTTTTTCGCTGCCGG
TATCAGCTCGGTTTTACACCCGAAGAACCCTTTTGCACCGACCTTGCATT
TTAATTATCGGTATTTTGAGACAGATGCACCAAAAGATACTCCTGGAGCA
CCTCGACAATGGTGGTTTGGCGGTGGAACAGATTTAACTCCTGCATATAT
CTTTGAAGAGGATGTTAAGCACTTCCATTCTACTCAAAAAAGTGCCCGCG
ACAAATTTGATCCTACCTTTTATCCTCGATTCAAGAAATGGTGTGATGAC
TATTTCTATATCAAGCATCGTGGTGAAAGACGAGGGCTTGGAGGACTATT
TTTTGATGATCTGAATGATTATGATCAGGAGATGCTTCTTTCTTTTGCTA
CTGAATGTGCAAATTCGGTGATTCGTGCTTACATACCCATTATAGAGAAG
AGAAAGGATACACCATTTACCGATCAGCATAAGGCATGGCAACAGTTGCG
CAGGGGAC
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