CX306419

Overview
NameCX306419
Unique NameCX306419
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_PSEU2 (Coproporphyrinogen-III oxidase, aerobic OS=Pseudomonas syringae pv. syringae (strain B728a) GN=hemF PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.466e-32
Identity = 65/157 (41.40%), Postives = 87/157 (55.41%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP  PT H N R+F  +      G    WWFGGG DLTP Y  EED  H+H   + A   F    YPR+K WCD YF++KH          FFDD+N +D +   +F     ++ I AY+PI+ +RK   +T Q + +Q+ RRG
Sbjct:   87 FEALGVSLVIHPHNPHVPTSHANVRFFIAEKE----GEEAVWWFGGGFDLTPYYGVEEDCVHWHRVAERACAPFGEDVYPRYKAWCDSYFHLKHRDEPRGIGGLFFDDVNQWDFDTSFAFIRAIGDAFINAYLPIVRRRKAAAYTVQQREFQEFRRG 239          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_PSEF5 (Coproporphyrinogen-III oxidase, aerobic OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=hemF PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.466e-32
Identity = 65/157 (41.40%), Postives = 89/157 (56.69%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP  PT H N R+F  +   + P     WWFGGG DLTP Y   +D  H+H   + A   F    YPR+K WCD YF+IKH          FFDDLN++D +   +F     ++ I AY+PI+++RK   +T Q + +Q+ RRG
Sbjct:   87 FEALGVSLVIHPHNPHVPTSHANVRFFIAEKEGEEP----VWWFGGGFDLTPYYGNIDDCVHWHRVAERACAPFGADVYPRYKAWCDSYFHIKHRNEPRGIGGLFFDDLNEWDFDTSFAFMRAIGDAYIEAYLPIVQRRKAAAYTAQQREFQEFRRG 239          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_SHEDO (Coproporphyrinogen-III oxidase, aerobic OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=hemF PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.220e-32
Identity = 69/157 (43.95%), Postives = 87/157 (55.41%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP+ PT H N R+F   A K+  GA   WWFGGG DLTP Y F+EDV  +H T       F    YP++KKWCDDYF++ H          FFDDLN    E   +F        I+AY PI+E+RK   F +  + +Q  RRG
Sbjct:   88 FEAMGVSLVIHPNNPYIPTTHANVRFFI--ASKE--GADPVWWFGGGFDLTPYYPFKEDVLSWHQTAADLCAPFGEEVYPKYKKWCDDYFFLPHRNETRGVGGLFFDDLNQAGFEQSFAFMRAVGEGFIQAYAPIVERRKALSFGEHERQFQLYRRG 240          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_CHRSD (Coproporphyrinogen-III oxidase, aerobic OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=hemF PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.220e-32
Identity = 64/157 (40.76%), Postives = 89/157 (56.69%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S VLHP+NP  PT H N R+F  +      GA   WWFGGG DLTP Y   EDV H+H   +     F    YPRFK+WCD+YF + H          FFDDLN+++ E   +F     ++ + AY+PI+ +R+ T + ++ + +Q  RRG
Sbjct:   88 FHAVGVSWVLHPRNPHVPTAHGNVRFFIAEKE----GAEPVWWFGGGFDLTPFYPVFEDVVHWHRVAQETCAPFGDDVYPRFKRWCDEYFTLHHRDETRGVGGLFFDDLNEWEFERCFAFQRAVGDAFLEAYVPIVRRRQATEYGERERDFQAFRRG 240          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_AERHH (Coproporphyrinogen-III oxidase, aerobic OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=hemF PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.220e-32
Identity = 64/157 (40.76%), Postives = 86/157 (54.78%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP+ PT H N R+F  +   + P     WWFGGG DLTP Y FEEDV+H+H   +     F    YP FK WCD YF++KH          FFDDLN +      +F        + AY+PI+E+RK   + ++ + +Q  RRG
Sbjct:   88 FEAMGVSLVIHPHNPYVPTSHANVRFFIAEKEGEEP----IWWFGGGFDLTPFYPFEEDVRHWHQLSRDLCQPFGTDIYPEFKSWCDRYFFLKHRDETRGVGGLFFDDLNRWPFADCFAFMQAVGKGYLDAYLPIVERRKALAYGEREREFQLYRRG 240          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_PSESM (Coproporphyrinogen-III oxidase, aerobic OS=Pseudomonas syringae pv. tomato GN=hemF PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.206e-32
Identity = 64/157 (40.76%), Postives = 88/157 (56.05%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP +P  PT H N R+F  +   + P     WWFGGG DLTP Y  EED  H+H   + A   F    YPR+K WCD YF++KH          FFDD+N +D +   +F     ++ I AY+PI+ +RK   +T Q + +Q+ RRG
Sbjct:   87 FEALGVSLVIHPHSPHVPTSHANVRFFIAEKEGEEP----VWWFGGGFDLTPYYGVEEDCVHWHRVAERACAPFGDDVYPRYKAWCDSYFHLKHRDEPRGIGGLFFDDVNQWDFDTSFAFIRAIGDAFINAYLPIVRRRKAAAYTVQQREFQEFRRG 239          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_CHRVO (Coproporphyrinogen-III oxidase, aerobic OS=Chromobacterium violaceum GN=hemF PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.206e-32
Identity = 63/157 (40.13%), Postives = 89/157 (56.69%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP  PT H N R+F  +   + P     WWFGGG DLTP Y  EED  H+H+  +     F    YPR+KKWCD+YF++KH          FFDDLN++  +   +F     +  + AY+PI+ +RK+  + D+ + +Q  RRG
Sbjct:   88 FEAMGVSLVIHPSNPHVPTSHANVRFFIAEKDGEAP----VWWFGGGFDLTPFYPQEEDAVHWHTVARDLCAPFGGDVYPRYKKWCDEYFHLKHRNEARGIGGLFFDDLNEWGFDKSFAFTRAVGDGYLDAYLPIVARRKEQAWGDRERQFQLYRRG 240          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_SHEWM (Coproporphyrinogen-III oxidase, aerobic OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=hemF PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.493e-32
Identity = 67/157 (42.68%), Postives = 89/157 (56.69%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP+ PT H N R+F   A K+  GA   WWFGGG DLTP Y F+EDV  +H         F    YP++KKWCDDYFY+ H          FFDDLN    +   +F     N  + AY PI+++RK+T + ++ + +Q  RRG
Sbjct:   88 FEAMGVSLVIHPNNPYIPTTHANVRFFI--AKKE--GADPVWWFGGGFDLTPYYPFKEDVIEWHQNAHDLCLPFGEEVYPKYKKWCDDYFYLPHRDETRGVGGLFFDDLNAEGFDTSFAFMQAVGNGFLTAYAPIVQRRKETQYGEREREFQLYRRG 240          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_RALPJ (Coproporphyrinogen-III oxidase, aerobic OS=Ralstonia pickettii (strain 12J) GN=hemF PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.174e-32
Identity = 65/157 (41.40%), Postives = 85/157 (54.14%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V HP+NP+ PT+H N R F        P     WWFGGG DLTP Y F ED  HFH T + A   +    YPRFK+WCDDYFY+KH          FFDD  +   E          ++ + A++PI E+R  T + ++ +A+Q  RRG
Sbjct:   88 FEAMGVSLVFHPRNPYVPTVHMNVRCFVAVRSDAAP----VWWFGGGMDLTPYYGFTEDASHFHRTCQGALAPYGDELYPRFKQWCDDYFYLKHRKEARGIGGIFFDDFAELGFERSFEMMRSVGDAFLPAWLPIAEQRHATAYGERERAFQAYRRG 240          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_BURPP (Coproporphyrinogen-III oxidase, aerobic OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=hemF PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 9.370e-32
Identity = 62/157 (39.49%), Postives = 88/157 (56.05%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S VLHP NP  PT+H N R      P + P     +WFGGG DLTP Y +EED +HFH T + A   +    YP FK+WCD+YF++KH          FFDD +    +   +      ++ ++AY+PI+EKR++ P+    + +Q  RRG
Sbjct:   93 FEAMGVSLVLHPHNPHCPTVHMNVRLLIATKPGEEP----VFWFGGGMDLTPYYGYEEDARHFHRTCRDALQPYGADLYPSFKRWCDEYFFLKHRNEARGIGGIFFDDFSAPGFDQSFAMLKSVGDAFLKAYLPIVEKRRNIPYGQAERDFQAYRRG 245          
The following BLAST results are available for this feature:
BLAST of CX306419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
HEM6_PSEU22.466e-3241.40Coproporphyrinogen-III oxidase, aerobic OS=Pseudom... [more]
HEM6_PSEF52.466e-3241.40Coproporphyrinogen-III oxidase, aerobic OS=Pseudom... [more]
HEM6_SHEDO3.220e-3243.95Coproporphyrinogen-III oxidase, aerobic OS=Shewane... [more]
HEM6_CHRSD3.220e-3240.76Coproporphyrinogen-III oxidase, aerobic OS=Chromoh... [more]
HEM6_AERHH3.220e-3240.76Coproporphyrinogen-III oxidase, aerobic OS=Aeromon... [more]
HEM6_PSESM4.206e-3240.76Coproporphyrinogen-III oxidase, aerobic OS=Pseudom... [more]
HEM6_CHRVO4.206e-3240.13Coproporphyrinogen-III oxidase, aerobic OS=Chromob... [more]
HEM6_SHEWM5.493e-3242.68Coproporphyrinogen-III oxidase, aerobic OS=Shewane... [more]
HEM6_RALPJ7.174e-3241.40Coproporphyrinogen-III oxidase, aerobic OS=Ralston... [more]
HEM6_BURPP9.370e-3239.49Coproporphyrinogen-III oxidase, aerobic OS=Burkhol... [more]

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Properties
Property NameValue
Genbank descriptionC18017H02Rv Drought1 Citrus clementina cDNA clone C18017H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306419 ID=CX306419; Name=CX306419; organism=Citrus clementina; type=EST; length=558bp
GCGGGGTTGTTTATGGGGTCATGCCTCCTGAAGCTTATAGAGCTGCCAAA
GCTGCTGCTTCTGATGAGAAGCCCGGTCCCATTCCCTTTTTCGCTGCCGG
TATCAGCTCGGTTTTACACCCGAAGAACCCTTTTGCACCGACCTTGCATT
TTAATTATCGGTATTTTGAGACAGATGCACCAAAAGATACTCCTGGAGCA
CCTCGACAATGGTGGTTTGGCGGTGGAACAGATTTAACTCCTGCATATAT
CTTTGAAGAGGATGTTAAGCACTTCCATTCTACTCAAAAAAGTGCCCGCG
ACAAATTTGATCCTACCTTTTATCCTCGATTCAAGAAATGGTGTGATGAC
TATTTCTATATCAAGCATCGTGGTGAAAGACGAGGGCTTGGAGGACTATT
TTTTGATGATCTGAATGATTATGATCAGGAGATGCTTCTTTCTTTTGCTA
CTGAATGTGCAAATTCGGTGATTCGTGCTTACATACCCATTATAGAGAAG
AGAAAGGATACACCATTTACCGATCAGCATAAGGCATGGCAACAGTTGCG
CAGGGGAC
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