CX306419

Overview
NameCX306419
Unique NameCX306419
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_VIBSL (Coproporphyrinogen-III oxidase, aerobic OS=Vibrio splendidus (strain LGP32) GN=hemF PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.087e-31
Identity = 63/157 (40.13%), Postives = 87/157 (55.41%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HPKNP+ PT H N R+F  +   + P     WWFGGG DLTP Y  +ED + +H T K     F    Y   K+WCD YFY+ H          FFDDLN++  E   ++          AY+PI+E+RK+TP+ ++ + +Q  RRG
Sbjct:   92 FEAMGVSLVIHPKNPYIPTSHANVRFFIAEKEGEDP----IWWFGGGFDLTPFYPVDEDCQSWHQTAKDLCAPFGDDVYQEHKEWCDKYFYLPHRDETRGVGGLFFDDLNEWGFEKSFAYMQAVGEGFAAAYLPIVERRKETPYGERERDFQLYRRG 244          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_VIBVY (Coproporphyrinogen-III oxidase, aerobic OS=Vibrio vulnificus (strain YJ016) GN=hemF PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.726e-31
Identity = 63/157 (40.13%), Postives = 86/157 (54.78%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP+ PT H N R+F  +   + P     WWFGGG DLTP Y FEED + +H+T K     F    Y + K WCDDYFY+ H          FFDDLN ++ +    +          AY+PI+E+RK T + ++ + +Q  RRG
Sbjct:   92 FEAMGVSLVMHPHNPYVPTSHANVRFFIAEKEGEAP----IWWFGGGFDLTPFYPFEEDCQFWHNTAKEVCAPFGADVYAQHKAWCDDYFYLPHRGETRGIGGLFFDDLNQWEFDKCFDYIKAVGEGYCDAYLPIVERRKVTEYGEREREFQLYRRG 244          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_VIBVU (Coproporphyrinogen-III oxidase, aerobic OS=Vibrio vulnificus GN=hemF PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.726e-31
Identity = 63/157 (40.13%), Postives = 86/157 (54.78%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP+ PT H N R+F  +   + P     WWFGGG DLTP Y FEED + +H+T K     F    Y + K WCDDYFY+ H          FFDDLN ++ +    +          AY+PI+E+RK T + ++ + +Q  RRG
Sbjct:   92 FEAMGVSLVMHPHNPYVPTSHANVRFFIAEKEGEAP----IWWFGGGFDLTPFYPFEEDCQFWHNTAKEVCAPFGADVYAQHKAWCDDYFYLPHRGETRGIGGLFFDDLNQWEFDKCFDYIKAVGEGYCDAYLPIVERRKVTEYGEREREFQLYRRG 244          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_VIBHB (Coproporphyrinogen-III oxidase, aerobic OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=hemF PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.726e-31
Identity = 62/157 (39.49%), Postives = 85/157 (54.14%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HPKNP+ PT H N R+F  +   + P     WWFGGG DLTP Y F+ED + +H T K     F    YP  K WCD YF++ H          FFDDLN ++ +    +         +AY+PI+ +RKD  F ++ + +Q  RRG
Sbjct:   92 FEAMGVSLVIHPKNPYVPTSHANVRFFIAEKDGEDP----IWWFGGGFDLTPFYPFDEDCQSWHDTAKQLCAPFGDEVYPEHKAWCDKYFFLPHRNETRGVGGLFFDDLNQWEFDKCFDYIKAVGEGYCQAYLPIVSRRKDIEFGEREREFQLYRRG 244          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_PROM1 (Coproporphyrinogen-III oxidase, aerobic OS=Prochlorococcus marinus (strain NATL1A) GN=hemF PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.726e-31
Identity = 71/182 (39.01%), Postives = 94/182 (51.65%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFD-----------------------DLNDY--DQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            +FA G S VLHPKNP+ PT+H NYRYFE         A   WWFGGG DLTP Y +  D +HFHS  K+A D  D   +  FK WCD+YF++KH          F+D                       +L +Y  + E L S A  C  + + +Y PII+KRK+  F+ + + +Q  RRG
Sbjct:   98 WFATGTSMVLHPKNPYIPTVHLNYRYFE---------AGPVWWFGGGADLTPFYPYLSDTRHFHSCHKNACDTIDKDLHKVFKPWCDEYFFLKHRNETRGVGGIFYDYQDGSGLLYKGQNANGKASKIAKELGEYSLNWENLFSLAKACGQAFLPSYEPIIKKRKNQSFSTKERDFQLYRRG 270          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_POLNA (Coproporphyrinogen-III oxidase, aerobic OS=Polaromonas naphthalenivorans (strain CJ2) GN=hemF PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.650e-31
Identity = 63/157 (40.13%), Postives = 86/157 (54.78%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V HP+NP+ PT+H N R        +        WFGGG DLTP Y F+ED  HFH   K +   F    YPRFK+WCD+YFY+KH          FFDD  +       +      +S ++AY+PI+E+RKD+ F ++ + +Q  RRG
Sbjct:   91 FEAMGVSLVFHPRNPYVPTVHMNVRMLAATPVGEN--CEPVCWFGGGMDLTPFYGFDEDAVHFHQVCKDSLKPFGDDKYPRFKQWCDEYFYLKHRQEQRGIGGVFFDDFQELGLAQSFAMMQSVGDSFLQAYLPIVERRKDSLFGERERDFQLYRRG 245          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_SHEPW (Coproporphyrinogen-III oxidase, aerobic OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=hemF PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 7.932e-31
Identity = 65/157 (41.40%), Postives = 88/157 (56.05%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP  PT H N R+F   A K+  G    WWFGGG DLTP Y + EDV  +H + K+  + F    YP++KKWCD+YF++ H          FFDDLN    +    F     N  + AY PI+E+RK+T + +  + +Q  RRG
Sbjct:   88 FEAMGVSLVIHPNNPHIPTTHANVRFFI--AHKE--GTDPIWWFGGGFDLTPYYPYLEDVVSWHQSAKALCEPFGDETYPKYKKWCDEYFWLPHRNETRGVGGLFFDDLNKQGFDKSFDFMQAVGNGFLTAYAPIVERRKETEYGEHERQFQLYRRG 240          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_XANC5 (Coproporphyrinogen-III oxidase, aerobic OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=hemF PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.036e-30
Identity = 62/155 (40.00%), Postives = 89/155 (57.42%), Query Frame = 3
Query:   93 AAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            A G+S V HP NP+ PT H N RYF  +   +   A    WFGGG DLTP Y F+EDV+H+H   ++  + F    Y   K+WCD+YF+++H          FFDDL   D E   ++     +  + AYIPI+++RKDTP+ ++ + +Q  RRG
Sbjct:   88 ACGVSLVFHPHNPYIPTTHMNVRYFRAERDGEVVAA----WFGGGFDLTPFYPFDEDVQHWHRVAQALCEPFGQERYAAHKRWCDEYFFLRHRNETRGVGGLFFDDLGQ-DFERDFAYQRAVGDGFLDAYIPIVQRRKDTPYGEREREFQLYRRG 237          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_PROMT (Coproporphyrinogen-III oxidase, aerobic OS=Prochlorococcus marinus (strain NATL2A) GN=hemF PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.036e-30
Identity = 70/182 (38.46%), Postives = 94/182 (51.65%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFD-----------------------DLNDY--DQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            +FA G S VLHPK+P+ PT+H NYRYFE         A   WWFGGG DLTP Y +  D +HFHS  K+A D  D   +  FK WCD+YF++KH          F+D                       +L +Y  + E L S A  C  + + +Y PII+KRK+  F+ + + +Q  RRG
Sbjct:   98 WFATGTSMVLHPKSPYIPTVHLNYRYFE---------AGPVWWFGGGADLTPFYPYLSDTRHFHSCHKNACDTIDKDLHKVFKPWCDEYFFLKHRNETRGVGGIFYDYQDGSGLLYKGQNANGKASKIAKELGEYSLNWENLFSLAKACGQAFLPSYEPIIKKRKNQSFSTKERDFQLYRRG 270          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_PROM9 (Coproporphyrinogen-III oxidase, aerobic OS=Prochlorococcus marinus (strain MIT 9312) GN=hemF PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.353e-30
Identity = 68/182 (37.36%), Postives = 92/182 (50.55%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFD-------------------------DLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            +FA G S VLHPKNPF PT+H NYRYFE         A   WWFGGG DLTP Y +  DV++FH   K A +K D   +  FK WCD+YF++KH          F+D                           ++ + + L S A  C  + + +Y+PIIEKR +  +T + + +Q  RRG
Sbjct:   92 WFATGTSMVLHPKNPFIPTVHLNYRYFE---------AGPVWWFGGGADLTPFYPYLSDVRNFHKEHKKACEKVDKDLHKVFKPWCDEYFFLKHRNESRGIGGIFYDYQDGSGNIYRGNNQNGEASKVSENIGKSNLNWDNLFSLAENCGQAFLPSYLPIIEKRANKTYTSKEREFQLYRRG 264          
The following BLAST results are available for this feature:
BLAST of CX306419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
HEM6_VIBSL2.087e-3140.13Coproporphyrinogen-III oxidase, aerobic OS=Vibrio ... [more]
HEM6_VIBVY2.726e-3140.13Coproporphyrinogen-III oxidase, aerobic OS=Vibrio ... [more]
HEM6_VIBVU2.726e-3140.13Coproporphyrinogen-III oxidase, aerobic OS=Vibrio ... [more]
HEM6_VIBHB2.726e-3139.49Coproporphyrinogen-III oxidase, aerobic OS=Vibrio ... [more]
HEM6_PROM12.726e-3139.01Coproporphyrinogen-III oxidase, aerobic OS=Prochlo... [more]
HEM6_POLNA4.650e-3140.13Coproporphyrinogen-III oxidase, aerobic OS=Polarom... [more]
HEM6_SHEPW7.932e-3141.40Coproporphyrinogen-III oxidase, aerobic OS=Shewane... [more]
HEM6_XANC51.036e-3040.00Coproporphyrinogen-III oxidase, aerobic OS=Xanthom... [more]
HEM6_PROMT1.036e-3038.46Coproporphyrinogen-III oxidase, aerobic OS=Prochlo... [more]
HEM6_PROM91.353e-3037.36Coproporphyrinogen-III oxidase, aerobic OS=Prochlo... [more]

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Properties
Property NameValue
Genbank descriptionC18017H02Rv Drought1 Citrus clementina cDNA clone C18017H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306419 ID=CX306419; Name=CX306419; organism=Citrus clementina; type=EST; length=558bp
GCGGGGTTGTTTATGGGGTCATGCCTCCTGAAGCTTATAGAGCTGCCAAA
GCTGCTGCTTCTGATGAGAAGCCCGGTCCCATTCCCTTTTTCGCTGCCGG
TATCAGCTCGGTTTTACACCCGAAGAACCCTTTTGCACCGACCTTGCATT
TTAATTATCGGTATTTTGAGACAGATGCACCAAAAGATACTCCTGGAGCA
CCTCGACAATGGTGGTTTGGCGGTGGAACAGATTTAACTCCTGCATATAT
CTTTGAAGAGGATGTTAAGCACTTCCATTCTACTCAAAAAAGTGCCCGCG
ACAAATTTGATCCTACCTTTTATCCTCGATTCAAGAAATGGTGTGATGAC
TATTTCTATATCAAGCATCGTGGTGAAAGACGAGGGCTTGGAGGACTATT
TTTTGATGATCTGAATGATTATGATCAGGAGATGCTTCTTTCTTTTGCTA
CTGAATGTGCAAATTCGGTGATTCGTGCTTACATACCCATTATAGAGAAG
AGAAAGGATACACCATTTACCGATCAGCATAAGGCATGGCAACAGTTGCG
CAGGGGAC
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