CX306419

Overview
NameCX306419
Unique NameCX306419
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_BURXL (Coproporphyrinogen-III oxidase, aerobic OS=Burkholderia xenovorans (strain LB400) GN=hemF PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.767e-30
Identity = 61/157 (38.85%), Postives = 87/157 (55.41%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S VLHP NP  PT+H N R        + P     +WFGGG DLTP Y +EED +HFH T + A   +    YP FK+WCD+YF+++H          FFDD +    +   +      ++ ++AY+PIIEKR++ P+    + +Q  RRG
Sbjct:   93 FEAMGVSLVLHPHNPHCPTVHMNVRLLIATKAGEEP----VFWFGGGMDLTPFYGYEEDAQHFHRTCRDALQPYGADLYPSFKRWCDEYFFLRHRNEPRGIGGIFFDDFSAPGFDQSFAMLRSVGDAFLKAYLPIIEKRRNIPYGQAERDFQAYRRG 245          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_XYLFA (Coproporphyrinogen-III oxidase, aerobic OS=Xylella fastidiosa GN=hemF PE=3 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 2.308e-30
Identity = 65/155 (41.94%), Postives = 85/155 (54.84%), Query Frame = 3
Query:   93 AAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            A G+S V HPKNPF PT H N RYF  +       A    WFGGG DLTP Y F+EDV H+H+  +     F    Y   K+WCD+YF ++H          FFDDL D D E   ++     +  + AY PI+ +R DTP+ D+ +A+Q  RRG
Sbjct:   88 ACGVSLVFHPKNPFVPTTHLNVRYFRAERDGKQVAA----WFGGGFDLTPFYPFDEDVVHWHTVARDLCAPFGDERYAAHKRWCDEYFVLRHRNETRGVGGLFFDDL-DKDFERDFAYQRAVGDGFLDAYFPIVTRRHDTPYGDRERAFQLYRRG 237          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_VIBPA (Coproporphyrinogen-III oxidase, aerobic OS=Vibrio parahaemolyticus GN=hemF PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.308e-30
Identity = 61/157 (38.85%), Postives = 85/157 (54.14%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HPKNP+ PT H N R+F  +   + P     WWFGGG DLTP Y FEED + +H T K+    F    Y   K WCD YF++ H          FFDDLN ++ +    +         +AY+PI+ +RKD  + ++ + +Q  RRG
Sbjct:   92 FEAMGVSLVIHPKNPYVPTSHANVRFFIAEKEGEEP----IWWFGGGFDLTPFYPFEEDCQSWHDTAKAICAPFGEDVYAEHKAWCDKYFFLPHRNETRGVGGLFFDDLNHWEFDKCFDYIKAVGEGYCQAYLPIVSRRKDIEYGEREREFQLYRRG 244          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_XYLFT (Coproporphyrinogen-III oxidase, aerobic OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=hemF PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.014e-30
Identity = 65/155 (41.94%), Postives = 84/155 (54.19%), Query Frame = 3
Query:   93 AAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            A G+S V HPKNPF PT H N RYF  +       A    WFGGG DLTP Y F+EDV H+H+  +     F    Y   K+WCD+YF ++H          FFDDL D D E    +     +  + AY PI+ +R DTP+ D+ +A+Q  RRG
Sbjct:   88 ACGVSLVFHPKNPFVPTTHLNVRYFRAEREGKQVAA----WFGGGFDLTPFYPFDEDVVHWHTVARDLCAPFGDERYAAHKRWCDEYFVLRHRNETRGVGGLFFDDL-DKDFERDFDYQRAVGDGFLDAYFPIVTRRHDTPYGDRERAFQLYRRG 237          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_SYNSC (Coproporphyrinogen-III oxidase, aerobic OS=Synechococcus sp. (strain CC9605) GN=hemF PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.014e-30
Identity = 70/183 (38.25%), Postives = 89/183 (48.63%), Query Frame = 3
Query:   84 PFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFD--DLN-----------------------DYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            P+FA G S VLHP+NP+ PT+H NYRYFE         A   WWFGGG DLTP Y F +D +HFH T ++A D   P  +  FK WCD+YFY+KH          F+D  D N                           E L S       + + AY PI+EKR    + D+ + +Q  RRG
Sbjct:  111 PWFATGTSMVLHPRNPYIPTVHLNYRYFE---------AGPVWWFGGGADLTPYYPFLDDARHFHRTHQAACDSVHPDLHKVFKPWCDEYFYLKHRGETRGVGGIFYDYQDANGTLYKGQDPSGPAAQVSASLGARPLSWEQLFSLGQANGRAFLPAYAPIVEKRHPMAYGDRERDFQLYRRG 284          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_RICBR (Coproporphyrinogen-III oxidase, aerobic OS=Rickettsia bellii (strain RML369-C) GN=hemF PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.014e-30
Identity = 65/157 (41.40%), Postives = 87/157 (55.41%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            FFA GIS V H K+P  P +HFN RY ET             WFGGG DLTP Y  E++   FH+  K A DK+D  +YP+FKK CD+YFY+KH          F+D LN  + E   SF  +   +++  Y  I+  +   P+TD+ K +Q +RRG
Sbjct:   96 FFATGISLVAHLKSPLIPAMHFNTRYIETSKN----------WFGGGGDLTPFYPEEDETAKFHAAFKEACDKYDSGYYPKFKKQCDEYFYLKHRKEPRGVGGIFYDYLNSGNFEQDFSFTQDVGKALLSVYPEIVRNKLFLPWTDEQKEYQLIRRG 242          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_RICB8 (Coproporphyrinogen-III oxidase, aerobic OS=Rickettsia bellii (strain OSU 85-389) GN=hemF PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.014e-30
Identity = 65/157 (41.40%), Postives = 87/157 (55.41%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            FFA GIS V H K+P  P +HFN RY ET             WFGGG DLTP Y  E++   FH+  K A DK+D  +YP+FKK CD+YFY+KH          F+D LN  + E   SF  +   +++  Y  I+  +   P+TD+ K +Q +RRG
Sbjct:   96 FFATGISLVAHLKSPLIPAMHFNTRYIETSKN----------WFGGGGDLTPFYPEEDETAKFHAAFKEACDKYDSGYYPKFKKQCDEYFYLKHRKEPRGVGGIFYDYLNSGNFEQDFSFTQDVGKALLSVYPEIVRNKLFLPWTDEQKEYQLIRRG 242          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_XANAC (Coproporphyrinogen-III oxidase, aerobic OS=Xanthomonas axonopodis pv. citri GN=hemF PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.937e-30
Identity = 62/155 (40.00%), Postives = 88/155 (56.77%), Query Frame = 3
Query:   93 AAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            A G+S V HP NP+ PT H N RYF  +   +   A    WFGGG DLTP Y F+EDV+H+H   ++    F    Y   K+WCD+YF+++H          FFDDL   D E   ++     +  + AYIPI+++RKDTP+ ++ + +Q  RRG
Sbjct:   88 ACGVSLVFHPHNPYIPTTHMNVRYFRAERDGEVVAA----WFGGGFDLTPFYPFDEDVQHWHRVAQALCVPFGQERYAAHKRWCDEYFFLRHRNETRGVGGLFFDDLGQ-DFERDFAYQRAVGDGFLDAYIPIVQRRKDTPYGEREREFQLYRRG 237          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_VARPS (Coproporphyrinogen-III oxidase, aerobic OS=Variovorax paradoxus (strain S110) GN=hemF PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.937e-30
Identity = 63/158 (39.87%), Postives = 86/158 (54.43%), Query Frame = 3
Query:   84 PFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            PF A G+S V HP+NP+ P +H N R          P      WFGGG DLTP Y FE+D  HFH+  + A   F    YPRFK WCD+YF++KH          FFDD  +   +   +      N+ + AY+PIIE+R+  P+ ++ +A+Q  RRG
Sbjct:   90 PFEAMGVSLVFHPRNPYVPIVHMNVRMLAALPEGKDPVC----WFGGGMDLTPCYGFEDDAVHFHTVCRDALAPFGDDKYPRFKTWCDEYFFLKHRNEQRGIGGIFFDDFAEGGFDNGFALLRSVGNAFLPAYLPIIERRRAMPWGERERAFQLYRRG 243          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_AZOSE (Coproporphyrinogen-III oxidase, aerobic OS=Azoarcus sp. (strain EbN1) GN=hemF PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.937e-30
Identity = 67/165 (40.61%), Postives = 95/165 (57.58%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDT---PGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKF--DPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDL---NDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S VLHP+NP+ PT+H N R+F    P+     P A   WWFGGG DLTP Y +EEDV++FH   ++A   +  +P  Y R K+WCD YF++KH          FFDDL      D +     A    ++ + AY+PIIE+R+D  + ++ + +Q  RRG
Sbjct:   87 FEAMGVSLVLHPRNPYCPTVHMNVRFFIASHPEAAVPPPAAAPVWWFGGGMDLTPYYPYEEDVRNFHRACRAAVLPWGGEPE-YRRLKEWCDRYFFLKHRNEPRGVGGLFFDDLGADGKTDFDAAFGLARSVGDAFLDAYLPIIERRRDVAYGERERDFQAYRRG 250          
The following BLAST results are available for this feature:
BLAST of CX306419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
HEM6_BURXL1.767e-3038.85Coproporphyrinogen-III oxidase, aerobic OS=Burkhol... [more]
HEM6_XYLFA2.308e-3041.94Coproporphyrinogen-III oxidase, aerobic OS=Xylella... [more]
HEM6_VIBPA2.308e-3038.85Coproporphyrinogen-III oxidase, aerobic OS=Vibrio ... [more]
HEM6_XYLFT3.014e-3041.94Coproporphyrinogen-III oxidase, aerobic OS=Xylella... [more]
HEM6_SYNSC3.014e-3038.25Coproporphyrinogen-III oxidase, aerobic OS=Synecho... [more]
HEM6_RICBR3.014e-3041.40Coproporphyrinogen-III oxidase, aerobic OS=Rickett... [more]
HEM6_RICB83.014e-3041.40Coproporphyrinogen-III oxidase, aerobic OS=Rickett... [more]
HEM6_XANAC3.937e-3040.00Coproporphyrinogen-III oxidase, aerobic OS=Xanthom... [more]
HEM6_VARPS3.937e-3039.87Coproporphyrinogen-III oxidase, aerobic OS=Variovo... [more]
HEM6_AZOSE3.937e-3040.61Coproporphyrinogen-III oxidase, aerobic OS=Azoarcu... [more]

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Properties
Property NameValue
Genbank descriptionC18017H02Rv Drought1 Citrus clementina cDNA clone C18017H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306419 ID=CX306419; Name=CX306419; organism=Citrus clementina; type=EST; length=558bp
GCGGGGTTGTTTATGGGGTCATGCCTCCTGAAGCTTATAGAGCTGCCAAA
GCTGCTGCTTCTGATGAGAAGCCCGGTCCCATTCCCTTTTTCGCTGCCGG
TATCAGCTCGGTTTTACACCCGAAGAACCCTTTTGCACCGACCTTGCATT
TTAATTATCGGTATTTTGAGACAGATGCACCAAAAGATACTCCTGGAGCA
CCTCGACAATGGTGGTTTGGCGGTGGAACAGATTTAACTCCTGCATATAT
CTTTGAAGAGGATGTTAAGCACTTCCATTCTACTCAAAAAAGTGCCCGCG
ACAAATTTGATCCTACCTTTTATCCTCGATTCAAGAAATGGTGTGATGAC
TATTTCTATATCAAGCATCGTGGTGAAAGACGAGGGCTTGGAGGACTATT
TTTTGATGATCTGAATGATTATGATCAGGAGATGCTTCTTTCTTTTGCTA
CTGAATGTGCAAATTCGGTGATTCGTGCTTACATACCCATTATAGAGAAG
AGAAAGGATACACCATTTACCGATCAGCATAAGGCATGGCAACAGTTGCG
CAGGGGAC
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