CX306419

Overview
NameCX306419
Unique NameCX306419
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_XYLFM (Coproporphyrinogen-III oxidase, aerobic OS=Xylella fastidiosa (strain M12) GN=hemF PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.141e-30
Identity = 65/155 (41.94%), Postives = 83/155 (53.55%), Query Frame = 3
Query:   93 AAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            A G+S V HPKNPF PT H N RYF  +       A    WFGGG DLTP Y F+EDV H+H   +     F    Y   K+WCD+YF ++H          FFDDL D D E    +     +  + AY PI+ +R DTP+ D+ +A+Q  RRG
Sbjct:   88 ACGVSLVFHPKNPFVPTTHLNVRYFRAEREGKQVAA----WFGGGFDLTPFYPFDEDVVHWHRVARDLCAPFGDERYAAHKRWCDEYFVLRHRNETRGVGGLFFDDL-DKDFERDFDYQRAVGDGFLDAYFPIVTRRHDTPYGDRERAFQLYRRG 237          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_RICFE (Coproporphyrinogen-III oxidase, aerobic OS=Rickettsia felis GN=hemF PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 8.770e-30
Identity = 69/183 (37.70%), Postives = 93/183 (50.82%), Query Frame = 3
Query:    9 VYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            V+G   PE          D K     FFA GIS V H K+P  P +HFN RY ET             WFGGG DLTP Y  E +   FH+  K A DK+D ++YP+FKK CD+YFY+KH          F+D LN  + E   +F  +   +++  Y  I+  +   P+T + K +Q +RRG
Sbjct:   75 VFGEFSPEFRSEIPGAELDGK-----FFATGISLVAHLKSPLIPAMHFNTRYIETSKS----------WFGGGGDLTPFYPKENETAKFHAAFKEACDKYDSSYYPKFKKQCDEYFYLKHRKEPRGVGGIFYDYLNSGNFEQDFAFTQDVGRALLSVYPEIVRSKLFLPWTTEQKEYQLIRRG 242          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_PROM2 (Coproporphyrinogen-III oxidase, aerobic OS=Prochlorococcus marinus (strain MIT 9215) GN=hemF PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 8.770e-30
Identity = 66/182 (36.26%), Postives = 92/182 (50.55%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFD-------------------------DLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            +FA G S VLHPKNP+ PT+H NYRYFE         A   WWFGGG DLTP Y +  DV++FH+  K A +K D   +  FK WCD+YF++KH          F+D                           ++ + + L S A  C  + + +Y+PIIEKR    ++ + + +Q  RRG
Sbjct:   92 WFATGTSMVLHPKNPYIPTVHLNYRYFE---------AGPVWWFGGGADLTPFYPYLSDVRNFHNEHKKACEKVDNDLHKVFKPWCDEYFFLKHRNESRGIGGIFYDYQDGSGNIYRGNNQNGEASKASQSISKSNLNWDNLFSLAENCGQAFLPSYLPIIEKRASQTYSSREREFQLYRRG 264          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_SYNS9 (Coproporphyrinogen-III oxidase, aerobic OS=Synechococcus sp. (strain CC9902) GN=hemF PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.145e-29
Identity = 67/183 (36.61%), Postives = 87/183 (47.54%), Query Frame = 3
Query:   84 PFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFD-------------------------DLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            P+FA G S VLHP+NP+ PT+H NYRYFE         A   WWFGGG DLTP Y F +D +HFH T + A +   P  +  FK WCD+YFY+KH          F+D                                E L S       + + +Y PI+EKR  T + D+ + +Q  RRG
Sbjct:  111 PWFATGTSMVLHPRNPYIPTVHLNYRYFE---------AGPVWWFGGGADLTPYYPFLDDARHFHRTHQQACNSVHPNLHKVFKPWCDEYFYLKHRNETRGVGGIFYDYQDSRGTLYKGQDPTGAAAKVSSELGATPLSWEQLFSLGQANGRAFLPSYAPIVEKRHATSYGDRERDFQLYRRG 284          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_PROMS (Coproporphyrinogen-III oxidase, aerobic OS=Prochlorococcus marinus (strain AS9601) GN=hemF PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.145e-29
Identity = 66/182 (36.26%), Postives = 92/182 (50.55%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFD-------------------------DLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            +FA G S VLHPKNP+ PT+H NYRYFE         A   WWFGGG DLTP Y +  DV++FH+  K A +K D   +  FK WCD+YF++KH          F+D                           ++ + + L S A  C  + + +Y+PIIEKR    ++ + + +Q  RRG
Sbjct:   92 WFATGTSMVLHPKNPYIPTVHLNYRYFE---------AGPVWWFGGGADLTPFYPYLSDVRNFHNEHKKACEKVDQDLHKVFKPWCDEYFFLKHRNESRGIGGIFYDYQDGSGNIYRGNNKNGEASKASQNVGRSNLNWDNLFSLAENCGQAFLPSYLPIIEKRASQKYSPKEREFQLYRRG 264          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_PROM0 (Coproporphyrinogen-III oxidase, aerobic OS=Prochlorococcus marinus (strain MIT 9301) GN=hemF PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.145e-29
Identity = 66/182 (36.26%), Postives = 92/182 (50.55%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFD-------------------------DLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            +FA G S VLHPKNP+ PT+H NYRYFE         A   WWFGGG DLTP Y +  DV++FH+  K A +K D   +  FK WCD+YF++KH          F+D                           ++ + + L S A  C  + + +Y+PIIEKR    ++ + + +Q  RRG
Sbjct:   92 WFATGTSMVLHPKNPYIPTVHLNYRYFE---------AGPVWWFGGGADLTPFYPYLSDVRNFHNEHKKACEKVDQDLHKVFKPWCDEYFFLKHRNESRGIGGIFYDYQDGSGNIYRGNNQKGEASKASQNIGRSNLNWDDLFSLAENCGQAFLPSYLPIIEKRASQAYSSKEREFQLYRRG 264          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_XANCP (Coproporphyrinogen-III oxidase, aerobic OS=Xanthomonas campestris pv. campestris GN=hemF PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.954e-29
Identity = 63/155 (40.65%), Postives = 86/155 (55.48%), Query Frame = 3
Query:   93 AAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            A G+S V HP NP  PT H N RYF  +   +   A    WFGGG DLTP Y  +EDV H+H T ++    F    Y   K+WCD+YF+++H          FFDDL   D E   ++     +  + AY+PI+E+RKDTP+ +  +A+Q  RRG
Sbjct:   88 ACGVSLVFHPHNPHIPTTHANVRYFRAERDGEMVAA----WFGGGFDLTPFYPVDEDVMHWHRTAQALCAPFGEERYAAHKRWCDEYFFLRHRNETRGVGGLFFDDLGQ-DFERDFAYQRAVGDGFLDAYLPIVERRKDTPYGEAERAFQLYRRG 237          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_XANCB (Coproporphyrinogen-III oxidase, aerobic OS=Xanthomonas campestris pv. campestris (strain B100) GN=hemF PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.954e-29
Identity = 63/155 (40.65%), Postives = 86/155 (55.48%), Query Frame = 3
Query:   93 AAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            A G+S V HP NP  PT H N RYF  +   +   A    WFGGG DLTP Y  +EDV H+H T ++    F    Y   K+WCD+YF+++H          FFDDL   D E   ++     +  + AY+PI+E+RKDTP+ +  +A+Q  RRG
Sbjct:   88 ACGVSLVFHPHNPHIPTTHANVRYFRAERDGEMVAA----WFGGGFDLTPFYPVDEDVMHWHRTAQALCAPFGEERYAAHKRWCDEYFFLRHRDETRGVGGLFFDDLGQ-DFERDFAYQRAVGDGFLDAYLPIVERRKDTPYGEAERAFQLYRRG 237          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_XANC8 (Coproporphyrinogen-III oxidase, aerobic OS=Xanthomonas campestris pv. campestris (strain 8004) GN=hemF PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.954e-29
Identity = 63/155 (40.65%), Postives = 86/155 (55.48%), Query Frame = 3
Query:   93 AAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            A G+S V HP NP  PT H N RYF  +   +   A    WFGGG DLTP Y  +EDV H+H T ++    F    Y   K+WCD+YF+++H          FFDDL   D E   ++     +  + AY+PI+E+RKDTP+ +  +A+Q  RRG
Sbjct:   88 ACGVSLVFHPHNPHIPTTHANVRYFRAERDGEMVAA----WFGGGFDLTPFYPVDEDVMHWHRTAQALCAPFGEERYAAHKRWCDEYFFLRHRNETRGVGGLFFDDLGQ-DFERDFAYQRAVGDGFLDAYLPIVERRKDTPYGEAERAFQLYRRG 237          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_PROM5 (Coproporphyrinogen-III oxidase, aerobic OS=Prochlorococcus marinus (strain MIT 9515) GN=hemF PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.954e-29
Identity = 69/182 (37.91%), Postives = 90/182 (49.45%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFD--------------DLNDYDQ-----------EMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            +FA G S VLHPKNPF PT+H NYRYFE         A   WWFGGG DLTP Y +  DV+HFH    +A +K +   +  FK WCD+YF++KH          F+D              D N Y +             L + A  C  + + +Y PIIEKR    +T + + +Q  RRG
Sbjct:   92 WFATGTSMVLHPKNPFIPTVHLNYRYFE---------AGPVWWFGGGADLTPYYPYLSDVRHFHKEHSNACEKVNKKLHLVFKPWCDEYFFLKHRNESRGIGGIFYDYQDGSGNIYKGSNKDGNAYKESNNIGELNLNWNNLFALAENCGEAFLSSYQPIIEKRVSQNYTKEEREFQLYRRG 264          
The following BLAST results are available for this feature:
BLAST of CX306419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
HEM6_XYLFM5.141e-3041.94Coproporphyrinogen-III oxidase, aerobic OS=Xylella... [more]
HEM6_RICFE8.770e-3037.70Coproporphyrinogen-III oxidase, aerobic OS=Rickett... [more]
HEM6_PROM28.770e-3036.26Coproporphyrinogen-III oxidase, aerobic OS=Prochlo... [more]
HEM6_SYNS91.145e-2936.61Coproporphyrinogen-III oxidase, aerobic OS=Synecho... [more]
HEM6_PROMS1.145e-2936.26Coproporphyrinogen-III oxidase, aerobic OS=Prochlo... [more]
HEM6_PROM01.145e-2936.26Coproporphyrinogen-III oxidase, aerobic OS=Prochlo... [more]
HEM6_XANCP1.954e-2940.65Coproporphyrinogen-III oxidase, aerobic OS=Xanthom... [more]
HEM6_XANCB1.954e-2940.65Coproporphyrinogen-III oxidase, aerobic OS=Xanthom... [more]
HEM6_XANC81.954e-2940.65Coproporphyrinogen-III oxidase, aerobic OS=Xanthom... [more]
HEM6_PROM51.954e-2937.91Coproporphyrinogen-III oxidase, aerobic OS=Prochlo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC18017H02Rv Drought1 Citrus clementina cDNA clone C18017H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306419 ID=CX306419; Name=CX306419; organism=Citrus clementina; type=EST; length=558bp
GCGGGGTTGTTTATGGGGTCATGCCTCCTGAAGCTTATAGAGCTGCCAAA
GCTGCTGCTTCTGATGAGAAGCCCGGTCCCATTCCCTTTTTCGCTGCCGG
TATCAGCTCGGTTTTACACCCGAAGAACCCTTTTGCACCGACCTTGCATT
TTAATTATCGGTATTTTGAGACAGATGCACCAAAAGATACTCCTGGAGCA
CCTCGACAATGGTGGTTTGGCGGTGGAACAGATTTAACTCCTGCATATAT
CTTTGAAGAGGATGTTAAGCACTTCCATTCTACTCAAAAAAGTGCCCGCG
ACAAATTTGATCCTACCTTTTATCCTCGATTCAAGAAATGGTGTGATGAC
TATTTCTATATCAAGCATCGTGGTGAAAGACGAGGGCTTGGAGGACTATT
TTTTGATGATCTGAATGATTATGATCAGGAGATGCTTCTTTCTTTTGCTA
CTGAATGTGCAAATTCGGTGATTCGTGCTTACATACCCATTATAGAGAAG
AGAAAGGATACACCATTTACCGATCAGCATAAGGCATGGCAACAGTTGCG
CAGGGGAC
back to top