CX306419

Overview
NameCX306419
Unique NameCX306419
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_XANOR (Coproporphyrinogen-III oxidase, aerobic OS=Xanthomonas oryzae pv. oryzae GN=hemF PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.552e-29
Identity = 60/155 (38.71%), Postives = 88/155 (56.77%), Query Frame = 3
Query:   93 AAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            A G+S V HP NP+ PT H N RYF  +   +   A    WFGGG DLTP Y F+EDV+H+H   ++  + F    Y   K+WCD+YF+++H          FFDDL   + E   ++     N  + AY+PI+++RKDT + ++ + +Q  RRG
Sbjct:   88 ACGVSLVFHPHNPYIPTTHMNVRYFRAERDGEVVAA----WFGGGFDLTPFYPFDEDVQHWHRVAQALCEPFGEERYAAHKRWCDEYFFLRHRNETRGVGGLFFDDLGK-EFEHDFAYQQAVGNGFLDAYMPIVQRRKDTAYGEREREFQLYRRG 237          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_XANOP (Coproporphyrinogen-III oxidase, aerobic OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=hemF PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.552e-29
Identity = 60/155 (38.71%), Postives = 88/155 (56.77%), Query Frame = 3
Query:   93 AAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            A G+S V HP NP+ PT H N RYF  +   +   A    WFGGG DLTP Y F+EDV+H+H   ++  + F    Y   K+WCD+YF+++H          FFDDL   + E   ++     N  + AY+PI+++RKDT + ++ + +Q  RRG
Sbjct:   88 ACGVSLVFHPHNPYIPTTHMNVRYFRAERDGEVVAA----WFGGGFDLTPFYPFDEDVQHWHRVAQALCEPFGEERYAAHKRWCDEYFFLRHRNETRGVGGLFFDDLGK-EFEHDFAYQQAVGNGFLDAYMPIVQRRKDTAYGEREREFQLYRRG 237          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_XANOM (Coproporphyrinogen-III oxidase, aerobic OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=hemF PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.552e-29
Identity = 60/155 (38.71%), Postives = 88/155 (56.77%), Query Frame = 3
Query:   93 AAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            A G+S V HP NP+ PT H N RYF  +   +   A    WFGGG DLTP Y F+EDV+H+H   ++  + F    Y   K+WCD+YF+++H          FFDDL   + E   ++     N  + AY+PI+++RKDT + ++ + +Q  RRG
Sbjct:   88 ACGVSLVFHPHNPYIPTTHMNVRYFRAERDGEVVAA----WFGGGFDLTPFYPFDEDVQHWHRVAQALCEPFGEERYAAHKRWCDEYFFLRHRNETRGVGGLFFDDLGK-EFEHDFAYQQAVGNGFLDAYMPIVQRRKDTAYGEREREFQLYRRG 237          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_RICTY (Coproporphyrinogen-III oxidase, aerobic OS=Rickettsia typhi GN=hemF PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.552e-29
Identity = 61/157 (38.85%), Postives = 88/157 (56.05%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            FFA GIS V H K+P  P +HFN RY ET             WFGGG+DLTP Y  E +   FH+  K A DK+D ++YP+FK+ CD+YFY++H          F+D LN  + E   +F  +   +++  Y  I+  +   P+TD+ K +Q ++RG
Sbjct:   96 FFATGISVVAHLKSPLIPAMHFNTRYIETSKN----------WFGGGSDLTPFYPEENETAKFHTAFKEACDKYDSSYYPKFKRQCDEYFYLRHRKEPRGVGGIFYDYLNSGNFEQDFAFTRDIGKALLSVYPEIVRSKLFLPWTDEQKEYQLIKRG 242          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_RICPU (Coproporphyrinogen-III oxidase, aerobic OS=Rickettsia peacockii (strain Rustic) GN=hemF PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.552e-29
Identity = 68/183 (37.16%), Postives = 95/183 (51.91%), Query Frame = 3
Query:    9 VYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            V+G + PE          D K     FFA GIS V H K+P  P +HFN RY ET             WFGGG DLTP Y  + +   FH+  K A DK+D ++YP+FKK CD+YFY+KH          F+D LN+ + E   +F  +   +++  Y  I+  +   P+T + K +Q +RRG
Sbjct:   75 VFGKISPEFRNEIPGVELDGK-----FFATGISLVAHLKSPLIPAMHFNTRYIETSKS----------WFGGGGDLTPFYPEKNETVKFHAAFKEACDKYDSSYYPKFKKQCDEYFYLKHRKEPRGVGGIFYDYLNNGNFEQDFAFTQDVGKALLSVYPEIVRSKLFLPWTAEQKEYQLIRRG 242          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_RICCN (Coproporphyrinogen-III oxidase, aerobic OS=Rickettsia conorii GN=hemF PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.552e-29
Identity = 68/183 (37.16%), Postives = 95/183 (51.91%), Query Frame = 3
Query:    9 VYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            V+G + PE          D K     FFA GIS V H K+P  P +HFN RY ET             WFGGG DLTP Y  + +   FH+  K A DK+D ++YP+FKK CD+YFY+KH          F+D LN+ + E   +F  +   +++  Y  I+  +   P+T + K +Q +RRG
Sbjct:   75 VFGKISPEFRNEIPGAELDGK-----FFATGISLVAHLKSPLIPAMHFNTRYIETSKS----------WFGGGGDLTPFYPEKNETVKFHAAFKEACDKYDSSYYPKFKKQCDEYFYLKHRKEPRGVGGIFYDYLNNGNFEQDFAFTQDVGKALLSVYPEIVRSKLFLPWTAEQKEYQLIRRG 242          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_SYNPX (Coproporphyrinogen-III oxidase, aerobic OS=Synechococcus sp. (strain WH8102) GN=hemF PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 7.424e-29
Identity = 66/183 (36.07%), Postives = 86/183 (46.99%), Query Frame = 3
Query:   84 PFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFD-------------------------DLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            P+FA G S VLHP NP+ PT+H NYRYFE         A   WWFGGG DLTP Y F ED +HFH T ++A D   P  +  FK WCD+YF++KH          F+D                                E L +       + + +Y PI+EKR    + D+ + +Q  RRG
Sbjct:  112 PWFATGTSMVLHPHNPYIPTVHLNYRYFE---------AGPVWWFGGGADLTPYYPFLEDARHFHRTHQAACDSVHPDLHKVFKPWCDEYFFLKHRGETRGVGGIFYDYQDSSGVLYKGQDPSGPAAGVSAQLGARPLGWEQLFALGQANGRAFLPSYAPIVEKRHPMAYGDRERQFQLYRRG 285          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_RICRS (Coproporphyrinogen-III oxidase, aerobic OS=Rickettsia rickettsii (strain Sheila Smith) GN=hemF PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.424e-29
Identity = 67/183 (36.61%), Postives = 94/183 (51.37%), Query Frame = 3
Query:    9 VYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            V+G + PE          D K     FFA GIS V H K+P  P +HFN RY ET             WFGGG DLTP Y  + +   FH+  K   DK+D ++YP+FKK CD+YFY+KH          F+D LN+ + E   +F  +   +++  Y  I+  +   P+T + K +Q +RRG
Sbjct:   75 VFGKISPEFRNEIPGAELDGK-----FFATGISLVAHLKSPLIPAMHFNTRYIETSKS----------WFGGGGDLTPFYPEKNETVKFHAAFKEVCDKYDSSYYPKFKKQCDEYFYLKHRKEPRGVGGIFYDYLNNGNFEQDFAFTQDVGKTLLSVYPEIVRSKLFLPWTAEQKEYQLIRRG 242          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_RICRO (Coproporphyrinogen-III oxidase, aerobic OS=Rickettsia rickettsii (strain Iowa) GN=hemF PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.424e-29
Identity = 67/183 (36.61%), Postives = 94/183 (51.37%), Query Frame = 3
Query:    9 VYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            V+G + PE          D K     FFA GIS V H K+P  P +HFN RY ET             WFGGG DLTP Y  + +   FH+  K   DK+D ++YP+FKK CD+YFY+KH          F+D LN+ + E   +F  +   +++  Y  I+  +   P+T + K +Q +RRG
Sbjct:   75 VFGKISPEFRNEIPGAELDGK-----FFATGISLVAHLKSPLIPAMHFNTRYIETSKS----------WFGGGGDLTPFYPEKNETVKFHAAFKEVCDKYDSSYYPKFKKQCDEYFYLKHRKEPRGVGGIFYDYLNNGNFEQDFAFTQDVGKTLLSVYPEIVRSKLFLPWTAEQKEYQLIRRG 242          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_RICPR (Coproporphyrinogen-III oxidase, aerobic OS=Rickettsia prowazekii GN=hemF PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.696e-29
Identity = 62/157 (39.49%), Postives = 86/157 (54.78%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            FFA GIS V H K+P  P +HFN RY ET             WFGGG DLTP Y  E +   FH+  K A DK+D ++YP+FKK CD+YFY++H          F+D LN  + E   +F  +   +++  Y  I+  +   P+T + K +Q +RRG
Sbjct:   96 FFATGISVVAHLKSPLIPAMHFNTRYIETSKN----------WFGGGGDLTPFYPEENETAKFHTAFKEACDKYDSSYYPKFKKQCDEYFYLRHRKEPRGVGGIFYDYLNSGNFEQDFAFTKDIGKALLSVYPEIVRSKLFLPWTAEQKEYQLIRRG 242          
The following BLAST results are available for this feature:
BLAST of CX306419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
HEM6_XANOR2.552e-2938.71Coproporphyrinogen-III oxidase, aerobic OS=Xanthom... [more]
HEM6_XANOP2.552e-2938.71Coproporphyrinogen-III oxidase, aerobic OS=Xanthom... [more]
HEM6_XANOM2.552e-2938.71Coproporphyrinogen-III oxidase, aerobic OS=Xanthom... [more]
HEM6_RICTY2.552e-2938.85Coproporphyrinogen-III oxidase, aerobic OS=Rickett... [more]
HEM6_RICPU2.552e-2937.16Coproporphyrinogen-III oxidase, aerobic OS=Rickett... [more]
HEM6_RICCN2.552e-2937.16Coproporphyrinogen-III oxidase, aerobic OS=Rickett... [more]
HEM6_SYNPX7.424e-2936.07Coproporphyrinogen-III oxidase, aerobic OS=Synecho... [more]
HEM6_RICRS7.424e-2936.61Coproporphyrinogen-III oxidase, aerobic OS=Rickett... [more]
HEM6_RICRO7.424e-2936.61Coproporphyrinogen-III oxidase, aerobic OS=Rickett... [more]
HEM6_RICPR9.696e-2939.49Coproporphyrinogen-III oxidase, aerobic OS=Rickett... [more]

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Properties
Property NameValue
Genbank descriptionC18017H02Rv Drought1 Citrus clementina cDNA clone C18017H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306419 ID=CX306419; Name=CX306419; organism=Citrus clementina; type=EST; length=558bp
GCGGGGTTGTTTATGGGGTCATGCCTCCTGAAGCTTATAGAGCTGCCAAA
GCTGCTGCTTCTGATGAGAAGCCCGGTCCCATTCCCTTTTTCGCTGCCGG
TATCAGCTCGGTTTTACACCCGAAGAACCCTTTTGCACCGACCTTGCATT
TTAATTATCGGTATTTTGAGACAGATGCACCAAAAGATACTCCTGGAGCA
CCTCGACAATGGTGGTTTGGCGGTGGAACAGATTTAACTCCTGCATATAT
CTTTGAAGAGGATGTTAAGCACTTCCATTCTACTCAAAAAAGTGCCCGCG
ACAAATTTGATCCTACCTTTTATCCTCGATTCAAGAAATGGTGTGATGAC
TATTTCTATATCAAGCATCGTGGTGAAAGACGAGGGCTTGGAGGACTATT
TTTTGATGATCTGAATGATTATGATCAGGAGATGCTTCTTTCTTTTGCTA
CTGAATGTGCAAATTCGGTGATTCGTGCTTACATACCCATTATAGAGAAG
AGAAAGGATACACCATTTACCGATCAGCATAAGGCATGGCAACAGTTGCG
CAGGGGAC
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