CX306419

Overview
NameCX306419
Unique NameCX306419
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_CAUSK (Coproporphyrinogen-III oxidase, aerobic OS=Caulobacter sp. (strain K31) GN=hemF PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.965e-19
Identity = 51/188 (27.13%), Postives = 84/188 (44.68%), Query Frame = 3
Query:    9 VYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEE-----DVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            V+G   PE          D +     FFA GIS + H ++P  P +H N R+  T             WFGGG DLTP   ++      D   FH+  + A D  DPT++ ++K WCD+YF++ H          F+D  +  D     +F  +   + +  Y  ++ +R    ++ + +  Q ++RG
Sbjct:   81 VFGTFTPEMAKNMPGADEDPR-----FFATGISLIAHMRSPRVPAVHMNTRFIATTKS----------WFGGGGDLTPLLGYQRQQDFPDAIDFHAAYQRACDAHDPTWHAKYKAWCDEYFFLPHRNEPRGIGGIFYDHHDSGDWAKDFAFTQDVGRAFLEIYPTLVRRRMGETWSAEEREQQLVQRG 253          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_RHIME (Coproporphyrinogen-III oxidase, aerobic OS=Rhizobium meliloti GN=hemF PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.241e-17
Identity = 55/192 (28.65%), Postives = 85/192 (44.27%), Query Frame = 3
Query:    9 VYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAY-----IFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQ----EMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            V+G   PE          D +     F+A+GIS + HP NP  P +H N R   T +           WFGGG DLTP       + + D   FH   + A ++     + +FK+WCD+YFY+KH          F+D L   ++    +   +F  +   +    Y  I+    + P+T+Q +  Q +RRG
Sbjct:   90 VFGEFSPEFREQIPGASEDPR-----FWASGISLIAHPVNPNVPAVHMNTRMVVTTSN----------WFGGGADLTPVLDRRRIMTDPDTVLFHRAMEIACNRHPVADHAKFKQWCDEYFYLKHRNEPRGTGGIFYDWLRSAEELGGWDADFAFTRDVGKAFALVYPRIVRTNFNKPWTEQDRNEQLVRRG 266          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_AGRRK (Coproporphyrinogen-III oxidase, aerobic OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=hemF PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.519e-17
Identity = 56/192 (29.17%), Postives = 84/192 (43.75%), Query Frame = 3
Query:    9 VYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYI---FEEDVKH--FHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQ----EMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            VYG   P+          D +     F+A+G+S + HP NP  PT+H N R   T +           WFGGG DLTP       +ED     FH   +   D+     Y R+K WCD+YFY+KH          FFD L+  ++    +   +F  +   +    Y  I+    +  +T++ +  Q +RRG
Sbjct:   90 VYGEFSPDFRSQIPGAEEDPR-----FWASGLSLIAHPVNPNVPTVHMNTRMVVTTSQ----------WFGGGCDLTPMLNRRRTQEDTDSVLFHRAMQIVCDRHKVADYQRYKAWCDEYFYLKHRNESRGIGGIFFDWLHSTEEAGGWDADFAFTRDVGRAFSMVYPRIVRSNFNETWTEEDRDEQLIRRG 266          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_AGRT5 (Coproporphyrinogen-III oxidase, aerobic OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=hemF PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.477e-16
Identity = 54/192 (28.12%), Postives = 84/192 (43.75%), Query Frame = 3
Query:    9 VYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAY-----IFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQ----EMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            VYG   PE          D +     F+A+G+S + HP NP  P +H N R   T +           WFGGG DLTP         + D + FH   +   ++     YPR+K WCD+YF++KH          FFD L+  ++    +   +F  +   +    Y  I+    +  +T++ +  Q +RRG
Sbjct:   90 VYGEFSPEFRKQIPGAEEDPR-----FWASGLSLIAHPVNPNVPAVHMNTRMVVTTSH----------WFGGGADLTPVLGRRRTQQDPDTQLFHRAFEITCNRHPIADYPRYKSWCDEYFFLKHRDEPRGTGGIFFDWLHPDEEKGGWDANFTFVQDVGRAFNLVYPKIVRANFNQNWTEEDRDEQLIRRG 266          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_RHIE6 (Coproporphyrinogen-III oxidase, aerobic OS=Rhizobium etli (strain CIAT 652) GN=hemF PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.235e-16
Identity = 56/192 (29.17%), Postives = 80/192 (41.67%), Query Frame = 3
Query:    9 VYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIF-----EEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQ----EMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            VYG   PE          D +     F+A+GIS + HP NP  P +H N R   T +           WFGGG DLTP         +ED + FH   + A        Y  +K WCDDYF++KH          F+D L+  D+        +F  +   +    Y  I+    +  +T+  +  Q +RRG
Sbjct:   90 VYGEFSPEFRAQIPGAKDDPR-----FWASGISLIAHPVNPNVPAVHMNTRMVVTTSR----------WFGGGADLTPVLSRRRTQEDEDSQLFHKAMEIACRNHAVADYDAYKAWCDDYFFLKHRNEPRGIGGIFYDWLHSSDETGGWNADFAFTRDVGRAFAMVYPKIVRSNFNKLWTEADRDEQLIRRG 266          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_BRAJA (Coproporphyrinogen-III oxidase, aerobic OS=Bradyrhizobium japonicum GN=hemF PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.519e-16
Identity = 56/191 (29.32%), Postives = 86/191 (45.03%), Query Frame = 3
Query:    9 VYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIF-----EEDVKHFHSTQKSARDKFDPTF-YPRFKKWCDDYFYIKHXXXXXXXXXXFFD--DLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            V+G   PE          D +     F+A+GIS + H +NP  P +H N R+  T             WFGGG DLTP         + D   FH+  K A  + +    Y ++KKWCD+YFY+ H          F+D  D  D+D +  L+F  +   + ++ Y  I+ +   + +T   +  Q +RRG
Sbjct:  106 VHGEFAPEFRAQIPGAADDPR-----FWASGISLIAHLRNPHVPAVHMNTRFVVTTKA----------WFGGGADLTPVLDRRRTQDDADSIAFHAAMKEACVQPNGVADYDKYKKWCDEYFYLPHRKEARGIGGIFYDWHDSGDWDAD--LAFTQDVGRAFLKIYPDIVRRNFASAWTAADREEQLIRRG 279          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_MESSB (Coproporphyrinogen-III oxidase, aerobic OS=Mesorhizobium sp. (strain BNC1) GN=hemF PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.606e-15
Identity = 53/193 (27.46%), Postives = 84/193 (43.52%), Query Frame = 3
Query:    9 VYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAY-----IFEEDVKHFHSTQKSARDKFDPTF-YPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQ----EMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            V+G   PE          D +     F+A+GIS + HP+NP  PT+H N R   T           + WFGGG DLTP         + D   FH   +   ++      Y +FK WC++YF++ H          F+D L   ++    +   +F  +   + +  Y  I+ K  +T +T+  +  Q +RRG
Sbjct:   90 VHGEFSPEFRRQIPGAEEDPR-----FWASGISVIAHPQNPHVPTVHMNTRMVVT----------TRQWFGGGADLTPMLNRRRSQEDPDAIAFHKAMRFVCERHAAVADYEKFKNWCEEYFFLPHRNEPRGIGGIFYDWLKSPEENGGWDADFAFTQDVGRAFVMVYQHIVRKNFNTNWTEADREEQLIRRG 267          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_RHIL3 (Coproporphyrinogen-III oxidase, aerobic OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=hemF PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.577e-15
Identity = 53/192 (27.60%), Postives = 81/192 (42.19%), Query Frame = 3
Query:    9 VYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIF-----EEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQ----EMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            VYG   P+          D +     F+A+GIS + HP NP  P +H N R   T +           WFGGG DLTP         +ED + FH   + A        Y  +K WCD+YF++KH          F+D L+  ++    +   +F  +   +    Y  I+    +  +T+  +  Q +RRG
Sbjct:   90 VYGEFAPDFRAQIPGAKDDPR-----FWASGISLIAHPVNPNVPAVHMNTRMVVTTSR----------WFGGGADLTPVLSRRRTQEDEDSQLFHKAMEIACRNHAVADYDAYKTWCDEYFFLKHRNEARGIGGIFYDWLHSSEEAGGWDADFAFTRDVGRAFAMVYPKIVRSNFNKLWTEADRDEQLIRRG 266          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_AGRVS (Coproporphyrinogen-III oxidase, aerobic OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=hemF PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.672e-15
Identity = 54/193 (27.98%), Postives = 84/193 (43.52%), Query Frame = 3
Query:    9 VYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIF-----EEDVKHFHSTQKSARDKF-DPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEML----LSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            V+G   PE          D +     F+A+GIS + H  NP  P +H N R   T +           WFGGG DLTP         + D   FH+  ++A     D   YP +K WC++YF++ H          FFD L+  ++  L     +F  +        Y  ++ +  +TP+T++ +  Q +RRG
Sbjct:   90 VHGEFSPEFRKQMPGAEEDPR-----FWASGISLIAHSCNPHVPAVHMNTRMVVTTSQ----------WFGGGADLTPVLDRRRTQDDADTVAFHAALEAACAAHPDVADYPHYKAWCEEYFFLPHRQEPRGIGGIFFDWLHAGEKFDLWAANFAFVQDVGRQFAAVYPDLVRRNFNTPWTEEDREEQLVRRG 267          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_RHIEC (Coproporphyrinogen-III oxidase, aerobic OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=hemF PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.102e-15
Identity = 49/166 (29.52%), Postives = 73/166 (43.98%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIF-----EEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQ----EMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F+A+GIS + HP NP  P +H N R   T +           WFGGG DLTP         +ED + FH   + A        Y  +K WCDDYF++KH          F+D L+  ++        +F  +   +    Y  I+    +  +T+  +  Q +RRG
Sbjct:  111 FWASGISLIAHPVNPNVPAVHMNTRMVVTSSR----------WFGGGADLTPVLSRRRTQEDEDSQLFHKAMEIACRNHAVADYDAYKAWCDDYFFLKHRNEPRGIGGIFYDWLHSSEEAGGWNADFAFTRDVGRAFAMVYPKIVRSNFNKLWTEADRDEQLIRRG 266          
The following BLAST results are available for this feature:
BLAST of CX306419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
HEM6_CAUSK6.965e-1927.13Coproporphyrinogen-III oxidase, aerobic OS=Cauloba... [more]
HEM6_RHIME2.241e-1728.65Coproporphyrinogen-III oxidase, aerobic OS=Rhizobi... [more]
HEM6_AGRRK6.519e-1729.17Coproporphyrinogen-III oxidase, aerobic OS=Agrobac... [more]
HEM6_AGRT52.477e-1628.13Coproporphyrinogen-III oxidase, aerobic OS=Agrobac... [more]
HEM6_RHIE63.235e-1629.17Coproporphyrinogen-III oxidase, aerobic OS=Rhizobi... [more]
HEM6_BRAJA5.519e-1629.32Coproporphyrinogen-III oxidase, aerobic OS=Bradyrh... [more]
HEM6_MESSB1.606e-1527.46Coproporphyrinogen-III oxidase, aerobic OS=Mesorhi... [more]
HEM6_RHIL33.577e-1527.60Coproporphyrinogen-III oxidase, aerobic OS=Rhizobi... [more]
HEM6_AGRVS4.672e-1527.98Coproporphyrinogen-III oxidase, aerobic OS=Agrobac... [more]
HEM6_RHIEC6.102e-1529.52Coproporphyrinogen-III oxidase, aerobic OS=Rhizobi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC18017H02Rv Drought1 Citrus clementina cDNA clone C18017H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306419 ID=CX306419; Name=CX306419; organism=Citrus clementina; type=EST; length=558bp
GCGGGGTTGTTTATGGGGTCATGCCTCCTGAAGCTTATAGAGCTGCCAAA
GCTGCTGCTTCTGATGAGAAGCCCGGTCCCATTCCCTTTTTCGCTGCCGG
TATCAGCTCGGTTTTACACCCGAAGAACCCTTTTGCACCGACCTTGCATT
TTAATTATCGGTATTTTGAGACAGATGCACCAAAAGATACTCCTGGAGCA
CCTCGACAATGGTGGTTTGGCGGTGGAACAGATTTAACTCCTGCATATAT
CTTTGAAGAGGATGTTAAGCACTTCCATTCTACTCAAAAAAGTGCCCGCG
ACAAATTTGATCCTACCTTTTATCCTCGATTCAAGAAATGGTGTGATGAC
TATTTCTATATCAAGCATCGTGGTGAAAGACGAGGGCTTGGAGGACTATT
TTTTGATGATCTGAATGATTATGATCAGGAGATGCTTCTTTCTTTTGCTA
CTGAATGTGCAAATTCGGTGATTCGTGCTTACATACCCATTATAGAGAAG
AGAAAGGATACACCATTTACCGATCAGCATAAGGCATGGCAACAGTTGCG
CAGGGGAC
back to top