CX306419
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_CAUSK (Coproporphyrinogen-III oxidase, aerobic OS=Caulobacter sp. (strain K31) GN=hemF PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 6.965e-19 Identity = 51/188 (27.13%), Postives = 84/188 (44.68%), Query Frame = 3 Query: 9 VYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEE-----DVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557 V+G PE D + FFA GIS + H ++P P +H N R+ T WFGGG DLTP ++ D FH+ + A D DPT++ ++K WCD+YF++ H F+D + D +F + + + Y ++ +R ++ + + Q ++RG Sbjct: 81 VFGTFTPEMAKNMPGADEDPR-----FFATGISLIAHMRSPRVPAVHMNTRFIATTKS----------WFGGGGDLTPLLGYQRQQDFPDAIDFHAAYQRACDAHDPTWHAKYKAWCDEYFFLPHRNEPRGIGGIFYDHHDSGDWAKDFAFTQDVGRAFLEIYPTLVRRRMGETWSAEEREQQLVQRG 253
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_RHIME (Coproporphyrinogen-III oxidase, aerobic OS=Rhizobium meliloti GN=hemF PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.241e-17 Identity = 55/192 (28.65%), Postives = 85/192 (44.27%), Query Frame = 3 Query: 9 VYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAY-----IFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQ----EMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557 V+G PE D + F+A+GIS + HP NP P +H N R T + WFGGG DLTP + + D FH + A ++ + +FK+WCD+YFY+KH F+D L ++ + +F + + Y I+ + P+T+Q + Q +RRG Sbjct: 90 VFGEFSPEFREQIPGASEDPR-----FWASGISLIAHPVNPNVPAVHMNTRMVVTTSN----------WFGGGADLTPVLDRRRIMTDPDTVLFHRAMEIACNRHPVADHAKFKQWCDEYFYLKHRNEPRGTGGIFYDWLRSAEELGGWDADFAFTRDVGKAFALVYPRIVRTNFNKPWTEQDRNEQLVRRG 266
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_AGRRK (Coproporphyrinogen-III oxidase, aerobic OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=hemF PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 6.519e-17 Identity = 56/192 (29.17%), Postives = 84/192 (43.75%), Query Frame = 3 Query: 9 VYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYI---FEEDVKH--FHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQ----EMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557 VYG P+ D + F+A+G+S + HP NP PT+H N R T + WFGGG DLTP +ED FH + D+ Y R+K WCD+YFY+KH FFD L+ ++ + +F + + Y I+ + +T++ + Q +RRG Sbjct: 90 VYGEFSPDFRSQIPGAEEDPR-----FWASGLSLIAHPVNPNVPTVHMNTRMVVTTSQ----------WFGGGCDLTPMLNRRRTQEDTDSVLFHRAMQIVCDRHKVADYQRYKAWCDEYFYLKHRNESRGIGGIFFDWLHSTEEAGGWDADFAFTRDVGRAFSMVYPRIVRSNFNETWTEEDRDEQLIRRG 266
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_AGRT5 (Coproporphyrinogen-III oxidase, aerobic OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=hemF PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 2.477e-16 Identity = 54/192 (28.12%), Postives = 84/192 (43.75%), Query Frame = 3 Query: 9 VYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAY-----IFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQ----EMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557 VYG PE D + F+A+G+S + HP NP P +H N R T + WFGGG DLTP + D + FH + ++ YPR+K WCD+YF++KH FFD L+ ++ + +F + + Y I+ + +T++ + Q +RRG Sbjct: 90 VYGEFSPEFRKQIPGAEEDPR-----FWASGLSLIAHPVNPNVPAVHMNTRMVVTTSH----------WFGGGADLTPVLGRRRTQQDPDTQLFHRAFEITCNRHPIADYPRYKSWCDEYFFLKHRDEPRGTGGIFFDWLHPDEEKGGWDANFTFVQDVGRAFNLVYPKIVRANFNQNWTEEDRDEQLIRRG 266
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_RHIE6 (Coproporphyrinogen-III oxidase, aerobic OS=Rhizobium etli (strain CIAT 652) GN=hemF PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 3.235e-16 Identity = 56/192 (29.17%), Postives = 80/192 (41.67%), Query Frame = 3 Query: 9 VYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIF-----EEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQ----EMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557 VYG PE D + F+A+GIS + HP NP P +H N R T + WFGGG DLTP +ED + FH + A Y +K WCDDYF++KH F+D L+ D+ +F + + Y I+ + +T+ + Q +RRG Sbjct: 90 VYGEFSPEFRAQIPGAKDDPR-----FWASGISLIAHPVNPNVPAVHMNTRMVVTTSR----------WFGGGADLTPVLSRRRTQEDEDSQLFHKAMEIACRNHAVADYDAYKAWCDDYFFLKHRNEPRGIGGIFYDWLHSSDETGGWNADFAFTRDVGRAFAMVYPKIVRSNFNKLWTEADRDEQLIRRG 266
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_BRAJA (Coproporphyrinogen-III oxidase, aerobic OS=Bradyrhizobium japonicum GN=hemF PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 5.519e-16 Identity = 56/191 (29.32%), Postives = 86/191 (45.03%), Query Frame = 3 Query: 9 VYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIF-----EEDVKHFHSTQKSARDKFDPTF-YPRFKKWCDDYFYIKHXXXXXXXXXXFFD--DLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557 V+G PE D + F+A+GIS + H +NP P +H N R+ T WFGGG DLTP + D FH+ K A + + Y ++KKWCD+YFY+ H F+D D D+D + L+F + + ++ Y I+ + + +T + Q +RRG Sbjct: 106 VHGEFAPEFRAQIPGAADDPR-----FWASGISLIAHLRNPHVPAVHMNTRFVVTTKA----------WFGGGADLTPVLDRRRTQDDADSIAFHAAMKEACVQPNGVADYDKYKKWCDEYFYLPHRKEARGIGGIFYDWHDSGDWDAD--LAFTQDVGRAFLKIYPDIVRRNFASAWTAADREEQLIRRG 279
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_MESSB (Coproporphyrinogen-III oxidase, aerobic OS=Mesorhizobium sp. (strain BNC1) GN=hemF PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 1.606e-15 Identity = 53/193 (27.46%), Postives = 84/193 (43.52%), Query Frame = 3 Query: 9 VYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAY-----IFEEDVKHFHSTQKSARDKFDPTF-YPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQ----EMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557 V+G PE D + F+A+GIS + HP+NP PT+H N R T + WFGGG DLTP + D FH + ++ Y +FK WC++YF++ H F+D L ++ + +F + + + Y I+ K +T +T+ + Q +RRG Sbjct: 90 VHGEFSPEFRRQIPGAEEDPR-----FWASGISVIAHPQNPHVPTVHMNTRMVVT----------TRQWFGGGADLTPMLNRRRSQEDPDAIAFHKAMRFVCERHAAVADYEKFKNWCEEYFFLPHRNEPRGIGGIFYDWLKSPEENGGWDADFAFTQDVGRAFVMVYQHIVRKNFNTNWTEADREEQLIRRG 267
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_RHIL3 (Coproporphyrinogen-III oxidase, aerobic OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=hemF PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 3.577e-15 Identity = 53/192 (27.60%), Postives = 81/192 (42.19%), Query Frame = 3 Query: 9 VYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIF-----EEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQ----EMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557 VYG P+ D + F+A+GIS + HP NP P +H N R T + WFGGG DLTP +ED + FH + A Y +K WCD+YF++KH F+D L+ ++ + +F + + Y I+ + +T+ + Q +RRG Sbjct: 90 VYGEFAPDFRAQIPGAKDDPR-----FWASGISLIAHPVNPNVPAVHMNTRMVVTTSR----------WFGGGADLTPVLSRRRTQEDEDSQLFHKAMEIACRNHAVADYDAYKTWCDEYFFLKHRNEARGIGGIFYDWLHSSEEAGGWDADFAFTRDVGRAFAMVYPKIVRSNFNKLWTEADRDEQLIRRG 266
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_AGRVS (Coproporphyrinogen-III oxidase, aerobic OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=hemF PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 4.672e-15 Identity = 54/193 (27.98%), Postives = 84/193 (43.52%), Query Frame = 3 Query: 9 VYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIF-----EEDVKHFHSTQKSARDKF-DPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEML----LSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557 V+G PE D + F+A+GIS + H NP P +H N R T + WFGGG DLTP + D FH+ ++A D YP +K WC++YF++ H FFD L+ ++ L +F + Y ++ + +TP+T++ + Q +RRG Sbjct: 90 VHGEFSPEFRKQMPGAEEDPR-----FWASGISLIAHSCNPHVPAVHMNTRMVVTTSQ----------WFGGGADLTPVLDRRRTQDDADTVAFHAALEAACAAHPDVADYPHYKAWCEEYFFLPHRQEPRGIGGIFFDWLHAGEKFDLWAANFAFVQDVGRQFAAVYPDLVRRNFNTPWTEEDREEQLVRRG 267
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_RHIEC (Coproporphyrinogen-III oxidase, aerobic OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=hemF PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 6.102e-15 Identity = 49/166 (29.52%), Postives = 73/166 (43.98%), Query Frame = 3 Query: 87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIF-----EEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQ----EMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557 F+A+GIS + HP NP P +H N R T + WFGGG DLTP +ED + FH + A Y +K WCDDYF++KH F+D L+ ++ +F + + Y I+ + +T+ + Q +RRG Sbjct: 111 FWASGISLIAHPVNPNVPAVHMNTRMVVTSSR----------WFGGGADLTPVLSRRRTQEDEDSQLFHKAMEIACRNHAVADYDAYKAWCDDYFFLKHRNEPRGIGGIFYDWLHSSEEAGGWNADFAFTRDVGRAFAMVYPKIVRSNFNKLWTEADRDEQLIRRG 266 The following BLAST results are available for this feature:
BLAST of CX306419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 239
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Sequences
The
following sequences are available for this feature:
EST sequence >CX306419 ID=CX306419; Name=CX306419; organism=Citrus clementina; type=EST; length=558bpback to top |