CX306419

Overview
NameCX306419
Unique NameCX306419
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12865 contig Ccv1_Contig12865:604..1161. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_RHILW (Coproporphyrinogen-III oxidase, aerobic OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=hemF PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.969e-15
Identity = 49/166 (29.52%), Postives = 73/166 (43.98%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIF-----EEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQ----EMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F+A+GIS + HP NP  P +H N R   T +           WFGGG DLTP         +ED + FH   + A        Y  +K WCDDYF++KH          F+D L+  +     +   +F  +   +    Y  I+    +  +T+  +  Q +RRG
Sbjct:  111 FWASGISLIAHPVNPNVPAVHMNTRMVVTSSR----------WFGGGADLTPVLSRRRTQEDEDSQLFHKAMEIACRNHAVADYDAYKAWCDDYFFLKHRNEARGIGGIFYDWLHSNEDAGGWDADFAFTRDVGRAFSMVYPKIVRSNFNKLWTEADRDEQLIRRG 266          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_OCHA4 (Coproporphyrinogen-III oxidase, aerobic OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=hemF PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.746e-14
Identity = 53/193 (27.46%), Postives = 81/193 (41.97%), Query Frame = 3
Query:    9 VYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIF-----EEDVKHFHSTQKSARDKF-DPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQ----EMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            VYG   PE          D +     ++A+GIS + HP+NP  P +H N R   T           + WFGGG DLTP         + D   FH   +   +K  D   Y R K WCD+YF++ H          F+D L+  D+    +   ++  +        Y  ++ +  +  +TD  +  Q +RRG
Sbjct:   90 VYGEFSPEFRKQIPGAEEDPR-----YWASGISLIAHPQNPNVPAVHMNTRMVVTT----------RQWFGGGADLTPVLDNRRTQDDPDTLAFHKAFRFICEKHKDIVDYQRVKDWCDEYFFLPHRNEARGTGGIFYDWLHSPDEKGGWDADFAYTRDVGRGFSVVYPHLVRQNFNKDWTDADRNEQLIRRG 267          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_BRUSU (Coproporphyrinogen-III oxidase, aerobic OS=Brucella suis GN=hemF PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.662e-12
Identity = 50/193 (25.91%), Postives = 81/193 (41.97%), Query Frame = 3
Query:    9 VYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIF-----EEDVKHFHSTQKSARDKF-DPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQ----EMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            V+G   PE          D +     ++A+GIS + HP+NP  P +H N R   T           + WF GG DLTP         + D   FH   +   +K  D   Y R K+WCD+YF++ H          F+D L+  ++    +   +F  +        Y  ++ +  +  +T+  +  Q +RRG
Sbjct:   89 VHGEFSPEFRKQIPGAEEDPR-----YWASGISLIAHPQNPNVPAVHMNTRMIVTT----------RQWFAGGADLTPVLDRRRTQEDPDTLAFHKAFRFICEKHKDIVDYQRLKEWCDEYFFLPHRDEPRGIGGIFYDWLHSPEEKGGWDSDFAFTRDVGRGFSVVYPHLVRQNFNKDWTEADRDEQLIRRG 266          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_BRUME (Coproporphyrinogen-III oxidase, aerobic OS=Brucella melitensis GN=hemF PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.662e-12
Identity = 50/193 (25.91%), Postives = 81/193 (41.97%), Query Frame = 3
Query:    9 VYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIF-----EEDVKHFHSTQKSARDKF-DPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQ----EMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            V+G   PE          D +     ++A+GIS + HP+NP  P +H N R   T           + WF GG DLTP         + D   FH   +   +K  D   Y R K+WCD+YF++ H          F+D L+  ++    +   +F  +        Y  ++ +  +  +T+  +  Q +RRG
Sbjct:   89 VHGEFSPEFRKQIPGAEEDPR-----YWASGISLIAHPQNPNVPAVHMNTRMIVTT----------RQWFAGGADLTPVLDRRRTQEDPDTLAFHKAFRFICEKHKDIVDYQRLKEWCDEYFFLPHRDEPRGIGGIFYDWLHSPEEKGGWDSDFAFTRDVGRGFSVVYPHLVRQNFNKDWTEADRDEQLIRRG 266          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_BRUMB (Coproporphyrinogen-III oxidase, aerobic OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=hemF PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.662e-12
Identity = 50/193 (25.91%), Postives = 81/193 (41.97%), Query Frame = 3
Query:    9 VYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIF-----EEDVKHFHSTQKSARDKF-DPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQ----EMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            V+G   PE          D +     ++A+GIS + HP+NP  P +H N R   T           + WF GG DLTP         + D   FH   +   +K  D   Y R K+WCD+YF++ H          F+D L+  ++    +   +F  +        Y  ++ +  +  +T+  +  Q +RRG
Sbjct:   89 VHGEFSPEFRKQIPGAEEDPR-----YWASGISLIAHPQNPNVPAVHMNTRMIVTT----------RQWFAGGADLTPVLDRRRTQEDPDTLAFHKAFRFICEKHKDIVDYQRLKEWCDEYFFLPHRDEPRGIGGIFYDWLHSPEEKGGWDSDFAFTRDVGRGFSVVYPHLVRQNFNKDWTEADRDEQLIRRG 266          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_BRUC2 (Coproporphyrinogen-III oxidase, aerobic OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=hemF PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.662e-12
Identity = 50/193 (25.91%), Postives = 81/193 (41.97%), Query Frame = 3
Query:    9 VYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIF-----EEDVKHFHSTQKSARDKF-DPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQ----EMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            V+G   PE          D +     ++A+GIS + HP+NP  P +H N R   T           + WF GG DLTP         + D   FH   +   +K  D   Y R K+WCD+YF++ H          F+D L+  ++    +   +F  +        Y  ++ +  +  +T+  +  Q +RRG
Sbjct:   89 VHGEFSPEFRKQIPGAEEDPR-----YWASGISLIAHPQNPNVPAVHMNTRMIVTT----------RQWFAGGADLTPVLDRRRTQEDPDTLAFHKAFRFICEKHKDIVDYQRLKEWCDEYFFLPHRDEPRGIGGIFYDWLHSPEEKGGWDSDFAFTRDVGRGFSVVYPHLVRQNFNKDWTEADRDEQLIRRG 266          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_BRUAB (Coproporphyrinogen-III oxidase, aerobic OS=Brucella abortus GN=hemF PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.662e-12
Identity = 50/193 (25.91%), Postives = 81/193 (41.97%), Query Frame = 3
Query:    9 VYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIF-----EEDVKHFHSTQKSARDKF-DPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQ----EMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            V+G   PE          D +     ++A+GIS + HP+NP  P +H N R   T           + WF GG DLTP         + D   FH   +   +K  D   Y R K+WCD+YF++ H          F+D L+  ++    +   +F  +        Y  ++ +  +  +T+  +  Q +RRG
Sbjct:   89 VHGEFSPEFRKQIPGAEEDPR-----YWASGISLIAHPQNPNVPAVHMNTRMIVTT----------RQWFAGGADLTPVLDRRRTQEDPDTLAFHKAFRFICEKHKDIVDYQRLKEWCDEYFFLPHRDEPRGIGGIFYDWLHSPEEKGGWDSDFAFTRDVGRGFSVVYPHLVRQNFNKDWTEADRDEQLIRRG 266          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_BRUA2 (Coproporphyrinogen-III oxidase, aerobic OS=Brucella abortus (strain 2308) GN=hemF PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.662e-12
Identity = 50/193 (25.91%), Postives = 81/193 (41.97%), Query Frame = 3
Query:    9 VYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIF-----EEDVKHFHSTQKSARDKF-DPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQ----EMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            V+G   PE          D +     ++A+GIS + HP+NP  P +H N R   T           + WF GG DLTP         + D   FH   +   +K  D   Y R K+WCD+YF++ H          F+D L+  ++    +   +F  +        Y  ++ +  +  +T+  +  Q +RRG
Sbjct:   89 VHGEFSPEFRKQIPGAEEDPR-----YWASGISLIAHPQNPNVPAVHMNTRMIVTT----------RQWFAGGADLTPVLDRRRTQEDPDTLAFHKAFRFICEKHKDIVDYQRLKEWCDEYFFLPHRDEPRGIGGIFYDWLHSPEEKGGWDSDFAFTRDVGRGFSVVYPHLVRQNFNKDWTEADRDEQLIRRG 266          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_BRUA1 (Coproporphyrinogen-III oxidase, aerobic OS=Brucella abortus (strain S19) GN=hemF PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.662e-12
Identity = 50/193 (25.91%), Postives = 81/193 (41.97%), Query Frame = 3
Query:    9 VYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIF-----EEDVKHFHSTQKSARDKF-DPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQ----EMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            V+G   PE          D +     ++A+GIS + HP+NP  P +H N R   T           + WF GG DLTP         + D   FH   +   +K  D   Y R K+WCD+YF++ H          F+D L+  ++    +   +F  +        Y  ++ +  +  +T+  +  Q +RRG
Sbjct:   89 VHGEFSPEFRKQIPGAEEDPR-----YWASGISLIAHPQNPNVPAVHMNTRMIVTT----------RQWFAGGADLTPVLDRRRTQEDPDTLAFHKAFRFICEKHKDIVDYQRLKEWCDEYFFLPHRDEPRGIGGIFYDWLHSPEEKGGWDSDFAFTRDVGRGFSVVYPHLVRQNFNKDWTEADRDEQLIRRG 266          
The following BLAST results are available for this feature:
BLAST of CX306419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
HEM6_RHILW7.969e-1529.52Coproporphyrinogen-III oxidase, aerobic OS=Rhizobi... [more]
HEM6_OCHA46.746e-1427.46Coproporphyrinogen-III oxidase, aerobic OS=Ochroba... [more]
HEM6_BRUSU1.662e-1225.91Coproporphyrinogen-III oxidase, aerobic OS=Brucell... [more]
HEM6_BRUME1.662e-1225.91Coproporphyrinogen-III oxidase, aerobic OS=Brucell... [more]
HEM6_BRUMB1.662e-1225.91Coproporphyrinogen-III oxidase, aerobic OS=Brucell... [more]
HEM6_BRUC21.662e-1225.91Coproporphyrinogen-III oxidase, aerobic OS=Brucell... [more]
HEM6_BRUAB1.662e-1225.91Coproporphyrinogen-III oxidase, aerobic OS=Brucell... [more]
HEM6_BRUA21.662e-1225.91Coproporphyrinogen-III oxidase, aerobic OS=Brucell... [more]
HEM6_BRUA11.662e-1225.91Coproporphyrinogen-III oxidase, aerobic OS=Brucell... [more]

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Properties
Property NameValue
Genbank descriptionC18017H02Rv Drought1 Citrus clementina cDNA clone C18017H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306419 ID=CX306419; Name=CX306419; organism=Citrus clementina; type=EST; length=558bp
GCGGGGTTGTTTATGGGGTCATGCCTCCTGAAGCTTATAGAGCTGCCAAA
GCTGCTGCTTCTGATGAGAAGCCCGGTCCCATTCCCTTTTTCGCTGCCGG
TATCAGCTCGGTTTTACACCCGAAGAACCCTTTTGCACCGACCTTGCATT
TTAATTATCGGTATTTTGAGACAGATGCACCAAAAGATACTCCTGGAGCA
CCTCGACAATGGTGGTTTGGCGGTGGAACAGATTTAACTCCTGCATATAT
CTTTGAAGAGGATGTTAAGCACTTCCATTCTACTCAAAAAAGTGCCCGCG
ACAAATTTGATCCTACCTTTTATCCTCGATTCAAGAAATGGTGTGATGAC
TATTTCTATATCAAGCATCGTGGTGAAAGACGAGGGCTTGGAGGACTATT
TTTTGATGATCTGAATGATTATGATCAGGAGATGCTTCTTTCTTTTGCTA
CTGAATGTGCAAATTCGGTGATTCGTGCTTACATACCCATTATAGAGAAG
AGAAAGGATACACCATTTACCGATCAGCATAAGGCATGGCAACAGTTGCG
CAGGGGAC
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