CX306419
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_RHILW (Coproporphyrinogen-III oxidase, aerobic OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=hemF PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 7.969e-15 Identity = 49/166 (29.52%), Postives = 73/166 (43.98%), Query Frame = 3 Query: 87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIF-----EEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQ----EMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557 F+A+GIS + HP NP P +H N R T + WFGGG DLTP +ED + FH + A Y +K WCDDYF++KH F+D L+ + + +F + + Y I+ + +T+ + Q +RRG Sbjct: 111 FWASGISLIAHPVNPNVPAVHMNTRMVVTSSR----------WFGGGADLTPVLSRRRTQEDEDSQLFHKAMEIACRNHAVADYDAYKAWCDDYFFLKHRNEARGIGGIFYDWLHSNEDAGGWDADFAFTRDVGRAFSMVYPKIVRSNFNKLWTEADRDEQLIRRG 266
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_OCHA4 (Coproporphyrinogen-III oxidase, aerobic OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=hemF PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 6.746e-14 Identity = 53/193 (27.46%), Postives = 81/193 (41.97%), Query Frame = 3 Query: 9 VYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIF-----EEDVKHFHSTQKSARDKF-DPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQ----EMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557 VYG PE D + ++A+GIS + HP+NP P +H N R T + WFGGG DLTP + D FH + +K D Y R K WCD+YF++ H F+D L+ D+ + ++ + Y ++ + + +TD + Q +RRG Sbjct: 90 VYGEFSPEFRKQIPGAEEDPR-----YWASGISLIAHPQNPNVPAVHMNTRMVVTT----------RQWFGGGADLTPVLDNRRTQDDPDTLAFHKAFRFICEKHKDIVDYQRVKDWCDEYFFLPHRNEARGTGGIFYDWLHSPDEKGGWDADFAYTRDVGRGFSVVYPHLVRQNFNKDWTDADRNEQLIRRG 267
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_BRUSU (Coproporphyrinogen-III oxidase, aerobic OS=Brucella suis GN=hemF PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.662e-12 Identity = 50/193 (25.91%), Postives = 81/193 (41.97%), Query Frame = 3 Query: 9 VYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIF-----EEDVKHFHSTQKSARDKF-DPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQ----EMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557 V+G PE D + ++A+GIS + HP+NP P +H N R T + WF GG DLTP + D FH + +K D Y R K+WCD+YF++ H F+D L+ ++ + +F + Y ++ + + +T+ + Q +RRG Sbjct: 89 VHGEFSPEFRKQIPGAEEDPR-----YWASGISLIAHPQNPNVPAVHMNTRMIVTT----------RQWFAGGADLTPVLDRRRTQEDPDTLAFHKAFRFICEKHKDIVDYQRLKEWCDEYFFLPHRDEPRGIGGIFYDWLHSPEEKGGWDSDFAFTRDVGRGFSVVYPHLVRQNFNKDWTEADRDEQLIRRG 266
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_BRUME (Coproporphyrinogen-III oxidase, aerobic OS=Brucella melitensis GN=hemF PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.662e-12 Identity = 50/193 (25.91%), Postives = 81/193 (41.97%), Query Frame = 3 Query: 9 VYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIF-----EEDVKHFHSTQKSARDKF-DPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQ----EMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557 V+G PE D + ++A+GIS + HP+NP P +H N R T + WF GG DLTP + D FH + +K D Y R K+WCD+YF++ H F+D L+ ++ + +F + Y ++ + + +T+ + Q +RRG Sbjct: 89 VHGEFSPEFRKQIPGAEEDPR-----YWASGISLIAHPQNPNVPAVHMNTRMIVTT----------RQWFAGGADLTPVLDRRRTQEDPDTLAFHKAFRFICEKHKDIVDYQRLKEWCDEYFFLPHRDEPRGIGGIFYDWLHSPEEKGGWDSDFAFTRDVGRGFSVVYPHLVRQNFNKDWTEADRDEQLIRRG 266
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_BRUMB (Coproporphyrinogen-III oxidase, aerobic OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=hemF PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.662e-12 Identity = 50/193 (25.91%), Postives = 81/193 (41.97%), Query Frame = 3 Query: 9 VYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIF-----EEDVKHFHSTQKSARDKF-DPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQ----EMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557 V+G PE D + ++A+GIS + HP+NP P +H N R T + WF GG DLTP + D FH + +K D Y R K+WCD+YF++ H F+D L+ ++ + +F + Y ++ + + +T+ + Q +RRG Sbjct: 89 VHGEFSPEFRKQIPGAEEDPR-----YWASGISLIAHPQNPNVPAVHMNTRMIVTT----------RQWFAGGADLTPVLDRRRTQEDPDTLAFHKAFRFICEKHKDIVDYQRLKEWCDEYFFLPHRDEPRGIGGIFYDWLHSPEEKGGWDSDFAFTRDVGRGFSVVYPHLVRQNFNKDWTEADRDEQLIRRG 266
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_BRUC2 (Coproporphyrinogen-III oxidase, aerobic OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=hemF PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.662e-12 Identity = 50/193 (25.91%), Postives = 81/193 (41.97%), Query Frame = 3 Query: 9 VYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIF-----EEDVKHFHSTQKSARDKF-DPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQ----EMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557 V+G PE D + ++A+GIS + HP+NP P +H N R T + WF GG DLTP + D FH + +K D Y R K+WCD+YF++ H F+D L+ ++ + +F + Y ++ + + +T+ + Q +RRG Sbjct: 89 VHGEFSPEFRKQIPGAEEDPR-----YWASGISLIAHPQNPNVPAVHMNTRMIVTT----------RQWFAGGADLTPVLDRRRTQEDPDTLAFHKAFRFICEKHKDIVDYQRLKEWCDEYFFLPHRDEPRGIGGIFYDWLHSPEEKGGWDSDFAFTRDVGRGFSVVYPHLVRQNFNKDWTEADRDEQLIRRG 266
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_BRUAB (Coproporphyrinogen-III oxidase, aerobic OS=Brucella abortus GN=hemF PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.662e-12 Identity = 50/193 (25.91%), Postives = 81/193 (41.97%), Query Frame = 3 Query: 9 VYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIF-----EEDVKHFHSTQKSARDKF-DPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQ----EMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557 V+G PE D + ++A+GIS + HP+NP P +H N R T + WF GG DLTP + D FH + +K D Y R K+WCD+YF++ H F+D L+ ++ + +F + Y ++ + + +T+ + Q +RRG Sbjct: 89 VHGEFSPEFRKQIPGAEEDPR-----YWASGISLIAHPQNPNVPAVHMNTRMIVTT----------RQWFAGGADLTPVLDRRRTQEDPDTLAFHKAFRFICEKHKDIVDYQRLKEWCDEYFFLPHRDEPRGIGGIFYDWLHSPEEKGGWDSDFAFTRDVGRGFSVVYPHLVRQNFNKDWTEADRDEQLIRRG 266
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_BRUA2 (Coproporphyrinogen-III oxidase, aerobic OS=Brucella abortus (strain 2308) GN=hemF PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.662e-12 Identity = 50/193 (25.91%), Postives = 81/193 (41.97%), Query Frame = 3 Query: 9 VYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIF-----EEDVKHFHSTQKSARDKF-DPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQ----EMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557 V+G PE D + ++A+GIS + HP+NP P +H N R T + WF GG DLTP + D FH + +K D Y R K+WCD+YF++ H F+D L+ ++ + +F + Y ++ + + +T+ + Q +RRG Sbjct: 89 VHGEFSPEFRKQIPGAEEDPR-----YWASGISLIAHPQNPNVPAVHMNTRMIVTT----------RQWFAGGADLTPVLDRRRTQEDPDTLAFHKAFRFICEKHKDIVDYQRLKEWCDEYFFLPHRDEPRGIGGIFYDWLHSPEEKGGWDSDFAFTRDVGRGFSVVYPHLVRQNFNKDWTEADRDEQLIRRG 266
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_BRUA1 (Coproporphyrinogen-III oxidase, aerobic OS=Brucella abortus (strain S19) GN=hemF PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.662e-12 Identity = 50/193 (25.91%), Postives = 81/193 (41.97%), Query Frame = 3 Query: 9 VYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIF-----EEDVKHFHSTQKSARDKF-DPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQ----EMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557 V+G PE D + ++A+GIS + HP+NP P +H N R T + WF GG DLTP + D FH + +K D Y R K+WCD+YF++ H F+D L+ ++ + +F + Y ++ + + +T+ + Q +RRG Sbjct: 89 VHGEFSPEFRKQIPGAEEDPR-----YWASGISLIAHPQNPNVPAVHMNTRMIVTT----------RQWFAGGADLTPVLDRRRTQEDPDTLAFHKAFRFICEKHKDIVDYQRLKEWCDEYFFLPHRDEPRGIGGIFYDWLHSPEEKGGWDSDFAFTRDVGRGFSVVYPHLVRQNFNKDWTEADRDEQLIRRG 266 The following BLAST results are available for this feature:
BLAST of CX306419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 239
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Sequences
The
following sequences are available for this feature:
EST sequence >CX306419 ID=CX306419; Name=CX306419; organism=Citrus clementina; type=EST; length=558bpback to top |