CX306419

Overview
NameCX306419
Unique NameCX306419
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_BURM7 (Coproporphyrinogen-III oxidase, aerobic OS=Burkholderia mallei (strain NCTC 10247) GN=hemF PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.949e-37
Identity = 69/157 (43.95%), Postives = 96/157 (61.15%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S VLHP+NP+ PT+H N R      P + P     +WFGGG DLTP Y FEED +HFH T ++A + F    YPRFKKWCDDYF++KH          FFDD ++   E          ++ + +Y+PI+E+R+DTP+ ++ +A+Q  RRG
Sbjct:   93 FEALGVSLVLHPRNPYCPTVHMNVRMLIATKPGEAP----VFWFGGGMDLTPIYGFEEDARHFHRTCRAALEPFGAELYPRFKKWCDDYFFLKHRNEARGIGGIFFDDFSELGFERSFEMLQSVGDAFLPSYLPIVERRRDTPYGERERAFQAYRRG 245          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_PROMH (Coproporphyrinogen-III oxidase, aerobic OS=Proteus mirabilis (strain HI4320) GN=hemF PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 5.671e-37
Identity = 72/157 (45.86%), Postives = 91/157 (57.96%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP+ PT H N R+F  +   + P     WWFGGG DLTP Y FEEDV H+H   KS  D F   +Y R+KKWCDDYFY+KH          FFDDLN  D +    F        + AY+PI+EKRK  P+ ++ + +Q  RRG
Sbjct:   88 FQAMGVSLVIHPLNPYIPTSHANVRFFIAEKEGEDP----VWWFGGGFDLTPYYGFEEDVIHWHKVAKSVCDPFSQDYYARYKKWCDDYFYLKHRNEPRGVGGLFFDDLNTPDFDHCFEFVQHVGQGYLDAYLPIVEKRKSIPWGERERQFQLYRRG 240          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_ENTS8 (Coproporphyrinogen-III oxidase, aerobic OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=hemF PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 5.671e-37
Identity = 71/157 (45.22%), Postives = 93/157 (59.24%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP+NP+ PT H N R+F  + P    GA   WWFGGG DLTP Y FEED  H+H T +     F    YPR+KKWCDDYFY+KH          FFDDLN  D +   +F     +  + AY+PI+E+RK  P+ ++ + +Q  RRG
Sbjct:   86 FEAMGVSLVVHPRNPYVPTSHANVRFFIAEKP----GADPVWWFGGGFDLTPFYGFEEDAVHWHRTARDLCAPFGDDVYPRYKKWCDDYFYLKHRQEARGIGGLFFDDLNTPDFDTCFAFMQAVGDGYLNAYLPIVERRKTLPWGEREREFQLYRRG 238          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_NITEC (Coproporphyrinogen-III oxidase, aerobic OS=Nitrosomonas eutropha (strain C91) GN=hemF PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 7.407e-37
Identity = 74/157 (47.13%), Postives = 95/157 (60.51%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F AAG+S VLHP+NP+APT+H N R+F   A K+  GA   WWFGGG DLTP Y FEED  HFH   K A       +YPRFKKWCD+YFY+KH          FFDDLN  D     +      +  + AY+PI++KR + P+ ++ + +Q  RRG
Sbjct:   84 FEAAGVSLVLHPRNPYAPTVHMNVRFFA--AIKE--GAEPVWWFGGGMDLTPYYGFEEDAIHFHQICKHALQPSGSEYYPRFKKWCDEYFYLKHRKEPRGIGGVFFDDLNQPDFVTCFNLTKSVGDQFLAAYVPILQKRCNLPYGERERDFQAYRRG 236          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_KLEP7 (Coproporphyrinogen-III oxidase, aerobic OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=hemF PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 7.407e-37
Identity = 73/157 (46.50%), Postives = 92/157 (58.60%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP+ PT H N R+F  + P    GA   WWFGGG DLTP Y FEED  H+H T +     F    YPR+KKWCDDYFY+KH          FFDDLN  D +   +F     N    AY+PI+E+RK TP+ ++ + +Q  RRG
Sbjct:   86 FEAMGVSLVVHPLNPYVPTSHANVRFFIAEKP----GADPVWWFGGGFDLTPYYGFEEDAVHWHRTARDLCLPFGEEVYPRYKKWCDDYFYLKHRQEQRGIGGLFFDDLNTPDFDHCFAFMQAVGNGYADAYLPIVERRKATPYGERERHFQLYRRG 238          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_COXBU (Coproporphyrinogen-III oxidase, aerobic OS=Coxiella burnetii GN=hemF PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 7.407e-37
Identity = 69/157 (43.95%), Postives = 97/157 (61.78%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP+NP+ PT+H N+R+F     +  P    +WWFGGG DLTP Y FEED +H+H   K A D+F    YPRFK  CDDYFY+KH          FFDDLN+++ +    F     +S + AY+PI++ RK+ P+ ++ + +Q  RRG
Sbjct:   91 FQAEGLSLVIHPRNPYVPTVHANFRFFIAGKDEADP----RWWFGGGYDLTPYYGFEEDCRHWHRVAKKACDRFGEAIYPRFKAACDDYFYLKHRNEPRGIGGLFFDDLNEWEFKRCFEFIKILGDSFLEAYLPIMQNRKNHPYGERQREFQLYRRG 243          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_COXBR (Coproporphyrinogen-III oxidase, aerobic OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=hemF PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 7.407e-37
Identity = 69/157 (43.95%), Postives = 97/157 (61.78%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP+NP+ PT+H N+R+F     +  P    +WWFGGG DLTP Y FEED +H+H   K A D+F    YPRFK  CDDYFY+KH          FFDDLN+++ +    F     +S + AY+PI++ RK+ P+ ++ + +Q  RRG
Sbjct:   91 FQAEGLSLVIHPRNPYVPTVHANFRFFIAGKDEADP----RWWFGGGYDLTPYYGFEEDCRHWHRVAKKACDRFGEAIYPRFKAACDDYFYLKHRNEPRGIGGLFFDDLNEWEFKRCFEFIKILGDSFLEAYLPIMQNRKNHPYGERQREFQLYRRG 243          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_COXBN (Coproporphyrinogen-III oxidase, aerobic OS=Coxiella burnetii (strain Dugway 5J108-111) GN=hemF PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 7.407e-37
Identity = 69/157 (43.95%), Postives = 97/157 (61.78%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP+NP+ PT+H N+R+F     +  P    +WWFGGG DLTP Y FEED +H+H   K A D+F    YPRFK  CDDYFY+KH          FFDDLN+++ +    F     +S + AY+PI++ RK+ P+ ++ + +Q  RRG
Sbjct:   91 FQAEGLSLVIHPRNPYVPTVHANFRFFIAGKDEADP----RWWFGGGYDLTPYYGFEEDCRHWHRVAKKACDRFGEAIYPRFKAACDDYFYLKHRNEPRGIGGLFFDDLNEWEFKRCFEFIKILGDSFLEAYLPIMQNRKNHPYGERQREFQLYRRG 243          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_ALCBS (Coproporphyrinogen-III oxidase, aerobic OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=hemF PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.263e-36
Identity = 72/157 (45.86%), Postives = 91/157 (57.96%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HPKNP+ PT H N R+F  +   + P     WWFGGG DLTP Y FEEDV H+H T K A   F    YP FK WCDDYFY+KH          FFDDLN +D +   +      ++ + AY PI+ +RKD  F D+ + +Q  RRG
Sbjct:   88 FQAMGVSLVIHPKNPYVPTSHANVRFFVAEKEGEAP----VWWFGGGFDLTPYYGFEEDVVHWHQTAKVACQPFGKEIYPEFKTWCDDYFYLKHRNEPRGVGGLFFDDLNRFDFDTSFALMRSIGDAYVPAYQPILARRKDHEFGDRERQFQLYRRG 240          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_METCA (Coproporphyrinogen-III oxidase, aerobic OS=Methylococcus capsulatus GN=hemF PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.801e-36
Identity = 68/157 (43.31%), Postives = 96/157 (61.15%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP+ PT H N R+F  +   +TP     WWFGGG DLTP Y FEEDV H+H T ++A   F    YPRFK+WCD+YF++ H          FFDDLN++  E   +F     +  ++AY+PI+++RK  P+ ++ + +Q  RRG
Sbjct:   88 FQATGVSLVIHPLNPYVPTSHANVRFFLAEKEGETP----IWWFGGGFDLTPFYPFEEDVIHWHRTARNACLPFGEDVYPRFKRWCDEYFFLNHRNETRGVGGLFFDDLNEWGFERSFAFLRSVGDHYLKAYLPIVQRRKAIPYGEREREFQLYRRG 240          
The following BLAST results are available for this feature:
BLAST of CX306419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
HEM6_BURM71.949e-3743.95Coproporphyrinogen-III oxidase, aerobic OS=Burkhol... [more]
HEM6_PROMH5.671e-3745.86Coproporphyrinogen-III oxidase, aerobic OS=Proteus... [more]
HEM6_ENTS85.671e-3745.22Coproporphyrinogen-III oxidase, aerobic OS=Enterob... [more]
HEM6_NITEC7.407e-3747.13Coproporphyrinogen-III oxidase, aerobic OS=Nitroso... [more]
HEM6_KLEP77.407e-3746.50Coproporphyrinogen-III oxidase, aerobic OS=Klebsie... [more]
HEM6_COXBU7.407e-3743.95Coproporphyrinogen-III oxidase, aerobic OS=Coxiell... [more]
HEM6_COXBR7.407e-3743.95Coproporphyrinogen-III oxidase, aerobic OS=Coxiell... [more]
HEM6_COXBN7.407e-3743.95Coproporphyrinogen-III oxidase, aerobic OS=Coxiell... [more]
HEM6_ALCBS1.263e-3645.86Coproporphyrinogen-III oxidase, aerobic OS=Alcaniv... [more]
HEM6_METCA4.801e-3643.31Coproporphyrinogen-III oxidase, aerobic OS=Methylo... [more]

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Properties
Property NameValue
Genbank descriptionC18017H02Rv Drought1 Citrus clementina cDNA clone C18017H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306419 ID=CX306419; Name=CX306419; organism=Citrus clementina; type=EST; length=558bp
GCGGGGTTGTTTATGGGGTCATGCCTCCTGAAGCTTATAGAGCTGCCAAA
GCTGCTGCTTCTGATGAGAAGCCCGGTCCCATTCCCTTTTTCGCTGCCGG
TATCAGCTCGGTTTTACACCCGAAGAACCCTTTTGCACCGACCTTGCATT
TTAATTATCGGTATTTTGAGACAGATGCACCAAAAGATACTCCTGGAGCA
CCTCGACAATGGTGGTTTGGCGGTGGAACAGATTTAACTCCTGCATATAT
CTTTGAAGAGGATGTTAAGCACTTCCATTCTACTCAAAAAAGTGCCCGCG
ACAAATTTGATCCTACCTTTTATCCTCGATTCAAGAAATGGTGTGATGAC
TATTTCTATATCAAGCATCGTGGTGAAAGACGAGGGCTTGGAGGACTATT
TTTTGATGATCTGAATGATTATGATCAGGAGATGCTTCTTTCTTTTGCTA
CTGAATGTGCAAATTCGGTGATTCGTGCTTACATACCCATTATAGAGAAG
AGAAAGGATACACCATTTACCGATCAGCATAAGGCATGGCAACAGTTGCG
CAGGGGAC
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