CX306419

Overview
NameCX306419
Unique NameCX306419
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_KLEP3 (Coproporphyrinogen-III oxidase, aerobic OS=Klebsiella pneumoniae (strain 342) GN=hemF PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.801e-36
Identity = 72/157 (45.86%), Postives = 91/157 (57.96%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP+ PT H N R+F  + P    GA   WWFGGG DLTP Y FEED  H+H T +     F    YPR+KKWCDDYFY+KH          FFDDLN  D +   +F     N    AY+PI+E+RK  P+ ++ + +Q  RRG
Sbjct:   86 FEAMGVSLVVHPLNPYVPTSHANVRFFIAEKP----GADPVWWFGGGFDLTPYYGFEEDAIHWHRTARDLCLPFGEEVYPRYKKWCDDYFYLKHRQEQRGIGGLFFDDLNTPDFDHCFAFMQAVGNGYADAYLPIVERRKAMPYGERERHFQLYRRG 238          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_SHESR (Coproporphyrinogen-III oxidase, aerobic OS=Shewanella sp. (strain MR-7) GN=hemF PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 6.270e-36
Identity = 72/157 (45.86%), Postives = 94/157 (59.87%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HPKNP+ PT H N R+F   A KD  GA   WWFGGG DLTP Y FEEDV+ +H T K+    F    YP++KKWCD+YF++ H          FFDDLN    +    F     N  + AY PI+E+RK+TP+ ++ + +Q  RRG
Sbjct:   88 FEAMGVSLVIHPKNPYIPTTHANVRFFI--AHKD--GADPVWWFGGGFDLTPYYPFEEDVREWHQTAKNLCLPFGDDIYPKYKKWCDEYFFLPHRNETRGVGGLFFDDLNQAGFDKSFDFMQAVGNGFLTAYAPIVERRKETPYGEREREFQLYRRG 240          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_SHESM (Coproporphyrinogen-III oxidase, aerobic OS=Shewanella sp. (strain MR-4) GN=hemF PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 6.270e-36
Identity = 72/157 (45.86%), Postives = 94/157 (59.87%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HPKNP+ PT H N R+F   A KD  GA   WWFGGG DLTP Y FEEDV+ +H T K+    F    YP++KKWCD+YF++ H          FFDDLN    +    F     N  + AY PI+E+RK+TP+ ++ + +Q  RRG
Sbjct:   88 FEAMGVSLVIHPKNPYIPTTHANVRFFI--AHKD--GADPVWWFGGGFDLTPYYPFEEDVREWHQTAKNLCLPFGDDIYPKYKKWCDEYFFLPHRNETRGVGGLFFDDLNQAGFDKSFDFMQAVGNGFLTAYAPIVERRKETPYGEREREFQLYRRG 240          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_SHEB8 (Coproporphyrinogen-III oxidase, aerobic OS=Shewanella baltica (strain OS185) GN=hemF PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 6.270e-36
Identity = 73/157 (46.50%), Postives = 92/157 (58.60%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP+ PT H N R+F   A K+  GA   WWFGGG DLTP Y FEEDV+ +H T K     F    YP++KKWCD+YF++ H          FFDDLN    E   SF     N  + AY PI+E+RKDT F ++ + +Q  RRG
Sbjct:   88 FEAMGVSLVIHPNNPYIPTTHANVRFFI--AQKE--GADPVWWFGGGFDLTPYYPFEEDVREWHQTSKDICAPFGDEVYPKYKKWCDEYFFLPHRNETRGVGGLFFDDLNQAGFEQSFSFMQAVGNGFLTAYAPIVERRKDTEFGERERQFQLYRRG 240          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_SHEB5 (Coproporphyrinogen-III oxidase, aerobic OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=hemF PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 6.270e-36
Identity = 73/157 (46.50%), Postives = 92/157 (58.60%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP+ PT H N R+F   A K+  GA   WWFGGG DLTP Y FEEDV+ +H T K     F    YP++KKWCD+YF++ H          FFDDLN    E   SF     N  + AY PI+E+RKDT F ++ + +Q  RRG
Sbjct:   88 FEAMGVSLVIHPNNPYIPTTHANVRFFI--AQKE--GADPVWWFGGGFDLTPYYPFEEDVREWHQTSKDICAPFGDEVYPKYKKWCDEYFFLPHRNETRGVGGLFFDDLNQAGFEQSFSFMQAVGNGFLTAYAPIVERRKDTEFGERERQFQLYRRG 240          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_THISH (Coproporphyrinogen-III oxidase, aerobic OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=hemF PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 8.189e-36
Identity = 67/157 (42.68%), Postives = 96/157 (61.15%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP+NP+ PT H N R+F  +      GA   WWFGGG DLTP Y  +ED  H+H   K+A + F P  YPR+K+WCD+YF+++H          FFDDLN++  E   +F     +  + AY+PI+ +RKDTP+ ++ + +Q  RRG
Sbjct:   89 FQATGVSLVIHPRNPYVPTSHANVRFFIAEKE----GAEPIWWFGGGFDLTPYYGEDEDCVHWHRVAKAACEPFGPEVYPRYKQWCDEYFFLRHRNEPRGVGGLFFDDLNEWGFEKSFAFMRSVGDHYLDAYLPIVARRKDTPYGERERDFQLYRRG 241          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_SYNY3 (Coproporphyrinogen-III oxidase, aerobic OS=Synechocystis sp. (strain PCC 6803) GN=hemF PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 8.189e-36
Identity = 77/183 (42.08%), Postives = 95/183 (51.91%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFD--------------------------DLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F+A G S VLHPKNP+ PT+H NYRYFE         A   WWFGGG DLTP Y F ED  HFH T K+A D+    FYP FK+WCD+YFY+KH          FFD                           +     E L SFA  C  + + AY PI+EKR++T + D+ + +Q  RRG
Sbjct:  103 FYATGTSMVLHPKNPYIPTVHLNYRYFE---------AGPVWWFGGGADLTPYYPFAEDAAHFHHTLKNACDQTHGEFYPVFKRWCDEYFYLKHRQEMRGIGGIFFDYQDGNAPLYRGPDPNGPAAQYSNQLAPIEPLGWEDLFSFAQRCGRAFLPAYSPIVEKRRNTEYGDRQRQFQLYRRG 276          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_SACD2 (Coproporphyrinogen-III oxidase, aerobic OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=hemF PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 8.189e-36
Identity = 70/157 (44.59%), Postives = 93/157 (59.24%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP  PT H N R+F  +      GA   WWFGGG DLTP Y  +ED +H+H+T K+A   F    YPR+KKWCD+YFY+KH          FFDDLN+   +   +F     +S  +AY+PI+E+RKD P+    + +Q  RRG
Sbjct:   88 FEAMGVSLVIHPNNPHVPTSHANVRFFIAEKE----GAEPVWWFGGGYDLTPYYGNDEDCRHWHNTAKAACAPFGEDKYPRYKKWCDEYFYLKHRDEPRGVGGLFFDDLNELGFDQSFAFMQAVGDSYTQAYVPIVERRKDEPYNQAQRDFQLYRRG 240          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_SHESA (Coproporphyrinogen-III oxidase, aerobic OS=Shewanella sp. (strain ANA-3) GN=hemF PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.070e-35
Identity = 72/157 (45.86%), Postives = 94/157 (59.87%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HPKNP+ PT H N R+F   A KD  GA   WWFGGG DLTP Y FEEDV+ +H T K+    F    YP++KKWCD+YF++ H          FFDDLN    +    F     N  + AY PI+E+RK+TP+ ++ + +Q  RRG
Sbjct:   88 FEAMGVSLVIHPKNPYIPTTHANVRFFI--AHKD--GADPVWWFGGGFDLTPYYPFEEDVREWHQTAKNLCLPFGDDVYPKYKKWCDEYFFLPHRNETRGVGGLFFDDLNQAGFDKSFDFMQAVGNGFLTAYAPIVERRKETPYGERERDFQLYRRG 240          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_RALSO (Coproporphyrinogen-III oxidase, aerobic OS=Ralstonia solanacearum GN=hemF PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.070e-35
Identity = 70/157 (44.59%), Postives = 90/157 (57.32%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V HP+NP+APT+H N R F    P   P     WWFGGG DLTP Y F ED  HFH T K A + F    YPRFK+WCDDYFY+KH          FFDD  +   E          ++++ A++PI E+R  TP+ ++ +A+Q  RRG
Sbjct:   88 FEAMGVSLVFHPRNPYAPTVHMNVRCFVAQRPDAEP----VWWFGGGMDLTPYYGFAEDAAHFHRTCKQALEPFGEELYPRFKQWCDDYFYLKHRKEARGVGGIFFDDFAELGFERSFEMMRAVGDALLPAWLPIAEQRHATPYGERERAFQAYRRG 240          
The following BLAST results are available for this feature:
BLAST of CX306419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
HEM6_KLEP34.801e-3645.86Coproporphyrinogen-III oxidase, aerobic OS=Klebsie... [more]
HEM6_SHESR6.270e-3645.86Coproporphyrinogen-III oxidase, aerobic OS=Shewane... [more]
HEM6_SHESM6.270e-3645.86Coproporphyrinogen-III oxidase, aerobic OS=Shewane... [more]
HEM6_SHEB86.270e-3646.50Coproporphyrinogen-III oxidase, aerobic OS=Shewane... [more]
HEM6_SHEB56.270e-3646.50Coproporphyrinogen-III oxidase, aerobic OS=Shewane... [more]
HEM6_THISH8.189e-3642.68Coproporphyrinogen-III oxidase, aerobic OS=Thioalk... [more]
HEM6_SYNY38.189e-3642.08Coproporphyrinogen-III oxidase, aerobic OS=Synecho... [more]
HEM6_SACD28.189e-3644.59Coproporphyrinogen-III oxidase, aerobic OS=Sacchar... [more]
HEM6_SHESA1.070e-3545.86Coproporphyrinogen-III oxidase, aerobic OS=Shewane... [more]
HEM6_RALSO1.070e-3544.59Coproporphyrinogen-III oxidase, aerobic OS=Ralston... [more]

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Properties
Property NameValue
Genbank descriptionC18017H02Rv Drought1 Citrus clementina cDNA clone C18017H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306419 ID=CX306419; Name=CX306419; organism=Citrus clementina; type=EST; length=558bp
GCGGGGTTGTTTATGGGGTCATGCCTCCTGAAGCTTATAGAGCTGCCAAA
GCTGCTGCTTCTGATGAGAAGCCCGGTCCCATTCCCTTTTTCGCTGCCGG
TATCAGCTCGGTTTTACACCCGAAGAACCCTTTTGCACCGACCTTGCATT
TTAATTATCGGTATTTTGAGACAGATGCACCAAAAGATACTCCTGGAGCA
CCTCGACAATGGTGGTTTGGCGGTGGAACAGATTTAACTCCTGCATATAT
CTTTGAAGAGGATGTTAAGCACTTCCATTCTACTCAAAAAAGTGCCCGCG
ACAAATTTGATCCTACCTTTTATCCTCGATTCAAGAAATGGTGTGATGAC
TATTTCTATATCAAGCATCGTGGTGAAAGACGAGGGCTTGGAGGACTATT
TTTTGATGATCTGAATGATTATGATCAGGAGATGCTTCTTTCTTTTGCTA
CTGAATGTGCAAATTCGGTGATTCGTGCTTACATACCCATTATAGAGAAG
AGAAAGGATACACCATTTACCGATCAGCATAAGGCATGGCAACAGTTGCG
CAGGGGAC
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