CX306419

Overview
NameCX306419
Unique NameCX306419
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_SHEB2 (Coproporphyrinogen-III oxidase, aerobic OS=Shewanella baltica (strain OS223) GN=hemF PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.397e-35
Identity = 72/157 (45.86%), Postives = 92/157 (58.60%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP+ PT H N R+F   A K+  GA   WWFGGG DLTP Y FEEDV+ +H T K     F    YP++KKWCD+YF++ H          FFDDLN    +   SF     N  + AY PI+E+RKDT F ++ + +Q  RRG
Sbjct:   88 FEAMGVSLVIHPNNPYIPTTHANVRFFI--AQKE--GADPVWWFGGGFDLTPYYPFEEDVREWHQTSKDICAPFGDEVYPKYKKWCDEYFFLPHRNETRGVGGLFFDDLNQEGFDQSFSFMQAVGNGFLTAYAPIVERRKDTEFGERERQFQLYRRG 240          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_SALTY (Coproporphyrinogen-III oxidase, aerobic OS=Salmonella typhimurium GN=hemF PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.397e-35
Identity = 71/157 (45.22%), Postives = 90/157 (57.32%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP+ PT H N R+F  + P    GA   WWFGGG DLTP Y FEED  H+H T +     F    YPR+KKWCDDYF++KH          FFDDLN  D +    F     N   RAY+PI+E+RK   + ++ + +Q  RRG
Sbjct:   86 FEAMGVSLVVHPHNPYIPTSHANVRFFIAEKP----GADPVWWFGGGFDLTPYYGFEEDAVHWHRTARDLCQPFGDDVYPRYKKWCDDYFFLKHRNEQRGVGGLFFDDLNTPDFDHCFDFMQAVGNGYTRAYLPIVERRKAMVWGERERNFQLYRRG 238          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_SALPC (Coproporphyrinogen-III oxidase, aerobic OS=Salmonella paratyphi C (strain RKS4594) GN=hemF PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.397e-35
Identity = 71/157 (45.22%), Postives = 90/157 (57.32%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP+ PT H N R+F  + P    GA   WWFGGG DLTP Y FEED  H+H T +     F    YPR+KKWCDDYF++KH          FFDDLN  D +    F     N   RAY+PI+E+RK   + ++ + +Q  RRG
Sbjct:   86 FEAMGVSLVVHPHNPYIPTSHANVRFFIAEKP----GADPVWWFGGGFDLTPYYGFEEDAVHWHRTARDLCQPFGDDVYPRYKKWCDDYFFLKHRNEQRGIGGLFFDDLNTPDFDHCFDFMQAVGNGYTRAYLPIVERRKAMVWGERERNFQLYRRG 238          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_SALPB (Coproporphyrinogen-III oxidase, aerobic OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=hemF PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.397e-35
Identity = 71/157 (45.22%), Postives = 90/157 (57.32%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP+ PT H N R+F  + P    GA   WWFGGG DLTP Y FEED  H+H T +     F    YPR+KKWCDDYF++KH          FFDDLN  D +    F     N   RAY+PI+E+RK   + ++ + +Q  RRG
Sbjct:   86 FEAMGVSLVVHPHNPYIPTSHANVRFFIAEKP----GADPVWWFGGGFDLTPYYGFEEDAVHWHRTARDLCQPFGDDVYPRYKKWCDDYFFLKHRNEQRGIGGLFFDDLNTPDFDHCFDFMQAVGNGYTRAYLPIVERRKAMVWGERERNFQLYRRG 238          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_SALHS (Coproporphyrinogen-III oxidase, aerobic OS=Salmonella heidelberg (strain SL476) GN=hemF PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.397e-35
Identity = 71/157 (45.22%), Postives = 90/157 (57.32%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP+ PT H N R+F  + P    GA   WWFGGG DLTP Y FEED  H+H T +     F    YPR+KKWCDDYF++KH          FFDDLN  D +    F     N   RAY+PI+E+RK   + ++ + +Q  RRG
Sbjct:   86 FEAMGVSLVVHPHNPYIPTSHANVRFFIAEKP----GADPVWWFGGGFDLTPYYGFEEDAVHWHRTARDLCQPFGDDVYPRYKKWCDDYFFLKHRNEQRGVGGLFFDDLNTPDFDHCFDFMQAVGNGYTRAYLPIVERRKAMVWGERERNFQLYRRG 238          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_SALCH (Coproporphyrinogen-III oxidase, aerobic OS=Salmonella choleraesuis GN=hemF PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.397e-35
Identity = 71/157 (45.22%), Postives = 90/157 (57.32%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP+ PT H N R+F  + P    GA   WWFGGG DLTP Y FEED  H+H T +     F    YPR+KKWCDDYF++KH          FFDDLN  D +    F     N   RAY+PI+E+RK   + ++ + +Q  RRG
Sbjct:   86 FEAMGVSLVVHPHNPYIPTSHANVRFFIAEKP----GADPVWWFGGGFDLTPYYGFEEDAVHWHRTARDLCQPFGDDVYPRYKKWCDDYFFLKHRNEQRGIGGLFFDDLNTPDFDHCFDFMQAVGNGYTRAYLPIVERRKAMVWGERERNFQLYRRG 238          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_BURS3 (Coproporphyrinogen-III oxidase, aerobic OS=Burkholderia sp. (strain 383) GN=hemF PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.397e-35
Identity = 67/157 (42.68%), Postives = 93/157 (59.24%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S VLHP+NP+ PT+H N R      P + P     +WFGGG DLTP Y FE+D +HFH T K A D F    YPRFKKWCD+YF++KH          FFDD ++   E          ++ ++AY+PI+E+R + P+ ++ + +Q  RRG
Sbjct:   93 FEALGVSLVLHPRNPYCPTVHMNVRMLIATKPGEEP----VFWFGGGMDLTPVYGFEDDARHFHQTCKDALDPFGVELYPRFKKWCDEYFFLKHRNEMRGIGGIFFDDFSEPGFERSFDMMQSVGDAFLQAYLPIVERRAELPYGERERDFQAYRRG 245          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_SHESW (Coproporphyrinogen-III oxidase, aerobic OS=Shewanella sp. (strain W3-18-1) GN=hemF PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.383e-35
Identity = 72/157 (45.86%), Postives = 92/157 (58.60%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP+ PT H N R+F   A K+  GA   WWFGGG DLTP Y FEEDV+ +H T K     F    YP++KKWCD+YF++ H          FFDDLN    E   SF     N  + AY PI+E+RK+T F ++ + +Q  RRG
Sbjct:   88 FEAMGVSLVIHPNNPYIPTTHANVRFFI--AQKE--GADPVWWFGGGFDLTPYYPFEEDVREWHQTSKDICAPFGDEVYPKYKKWCDEYFFLPHRNETRGVGGLFFDDLNQDGFEQSFSFMQAVGNGFLTAYAPIVERRKETEFGERERQFQLYRRG 240          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_SHEPC (Coproporphyrinogen-III oxidase, aerobic OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=hemF PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.383e-35
Identity = 72/157 (45.86%), Postives = 92/157 (58.60%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP+ PT H N R+F   A K+  GA   WWFGGG DLTP Y FEEDV+ +H T K     F    YP++KKWCD+YF++ H          FFDDLN    E   SF     N  + AY PI+E+RK+T F ++ + +Q  RRG
Sbjct:   88 FEAMGVSLVIHPNNPYIPTTHANVRFFI--AQKE--GADPVWWFGGGFDLTPYYPFEEDVREWHQTSKDICAPFGDEVYPKYKKWCDEYFFLPHRNETRGVGGLFFDDLNQDGFEQSFSFMQAVGNGFLTAYAPIVERRKETEFGERERQFQLYRRG 240          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_SALEP (Coproporphyrinogen-III oxidase, aerobic OS=Salmonella enteritidis PT4 (strain P125109) GN=hemF PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.383e-35
Identity = 70/157 (44.59%), Postives = 90/157 (57.32%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP+ PT H N R+F  + P    GA   WWFGGG DLTP Y FEED  H+H T +     F    YPR+KKWCDDYF++KH          FFDDLN  D +   +F     N    AY+PI+E+RK   + ++ + +Q  RRG
Sbjct:   86 FEAMGVSLVVHPHNPYIPTSHANVRFFIAEKP----GADPVWWFGGGLDLTPYYGFEEDAVHWHRTARDLCQPFGDNVYPRYKKWCDDYFFLKHRNEQRGIGGLFFDDLNTPDFDHCFAFMQAVGNGYTEAYLPIVERRKAMVWGERERNFQLYRRG 238          
The following BLAST results are available for this feature:
BLAST of CX306419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
HEM6_SHEB21.397e-3545.86Coproporphyrinogen-III oxidase, aerobic OS=Shewane... [more]
HEM6_SALTY1.397e-3545.22Coproporphyrinogen-III oxidase, aerobic OS=Salmone... [more]
HEM6_SALPC1.397e-3545.22Coproporphyrinogen-III oxidase, aerobic OS=Salmone... [more]
HEM6_SALPB1.397e-3545.22Coproporphyrinogen-III oxidase, aerobic OS=Salmone... [more]
HEM6_SALHS1.397e-3545.22Coproporphyrinogen-III oxidase, aerobic OS=Salmone... [more]
HEM6_SALCH1.397e-3545.22Coproporphyrinogen-III oxidase, aerobic OS=Salmone... [more]
HEM6_BURS31.397e-3542.68Coproporphyrinogen-III oxidase, aerobic OS=Burkhol... [more]
HEM6_SHESW2.383e-3545.86Coproporphyrinogen-III oxidase, aerobic OS=Shewane... [more]
HEM6_SHEPC2.383e-3545.86Coproporphyrinogen-III oxidase, aerobic OS=Shewane... [more]
HEM6_SALEP2.383e-3544.59Coproporphyrinogen-III oxidase, aerobic OS=Salmone... [more]

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Properties
Property NameValue
Genbank descriptionC18017H02Rv Drought1 Citrus clementina cDNA clone C18017H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306419 ID=CX306419; Name=CX306419; organism=Citrus clementina; type=EST; length=558bp
GCGGGGTTGTTTATGGGGTCATGCCTCCTGAAGCTTATAGAGCTGCCAAA
GCTGCTGCTTCTGATGAGAAGCCCGGTCCCATTCCCTTTTTCGCTGCCGG
TATCAGCTCGGTTTTACACCCGAAGAACCCTTTTGCACCGACCTTGCATT
TTAATTATCGGTATTTTGAGACAGATGCACCAAAAGATACTCCTGGAGCA
CCTCGACAATGGTGGTTTGGCGGTGGAACAGATTTAACTCCTGCATATAT
CTTTGAAGAGGATGTTAAGCACTTCCATTCTACTCAAAAAAGTGCCCGCG
ACAAATTTGATCCTACCTTTTATCCTCGATTCAAGAAATGGTGTGATGAC
TATTTCTATATCAAGCATCGTGGTGAAAGACGAGGGCTTGGAGGACTATT
TTTTGATGATCTGAATGATTATGATCAGGAGATGCTTCTTTCTTTTGCTA
CTGAATGTGCAAATTCGGTGATTCGTGCTTACATACCCATTATAGAGAAG
AGAAAGGATACACCATTTACCGATCAGCATAAGGCATGGCAACAGTTGCG
CAGGGGAC
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