CX306419

Overview
NameCX306419
Unique NameCX306419
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_SALAR (Coproporphyrinogen-III oxidase, aerobic OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=hemF PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.383e-35
Identity = 70/157 (44.59%), Postives = 90/157 (57.32%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP+NP+ PT H N R+F  + P    GA   WWFGGG DLTP Y FEED  H+H T +     F    YPR+KKWCDDYF+IKH          FFDDLN  D     +F          AY+PI+E+RK   + ++ +++Q  RRG
Sbjct:   86 FEAMGVSLVVHPRNPYIPTSHANVRFFIAEKP----GADPVWWFGGGFDLTPYYGFEEDAVHWHRTARDLCQPFGEDVYPRYKKWCDDYFFIKHRNEQRGIGGLFFDDLNTPDFASCFAFMQAVGKGYTEAYLPIVERRKTMAWGERERSFQLYRRG 238          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_PSEP1 (Coproporphyrinogen-III oxidase, aerobic OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=hemF PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.383e-35
Identity = 69/157 (43.95%), Postives = 92/157 (58.60%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP  PT H N R+F  +      G    WWFGGG DLTP Y  EED  H+H   + A   F    YPR+K WCD YF++KH          FFDDLN++D +   +F     ++ I AY+PI+++RKDTP+T Q + +Q+ RRG
Sbjct:   87 FEALGVSLVIHPYNPHVPTSHANVRFFIAEKE----GEEAVWWFGGGFDLTPYYGNEEDCVHWHRVAEQACAPFGADVYPRYKAWCDRYFHLKHRGEPRGIGGLFFDDLNEWDFDTCFAFIRAIGDAYINAYLPIVQRRKDTPYTPQQREFQEYRRG 239          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_LEGPH (Coproporphyrinogen-III oxidase, aerobic OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=hemF PE=3 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 2.383e-35
Identity = 70/157 (44.59%), Postives = 90/157 (57.32%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP+NP+ PT H N R+F  +     P     WWFGGG DLTP Y F ED +H+H T  +A   F  T YP+FK+WCDDYF+IKH          FFDD N+   +          +  I AY PI+ +RKD PF ++ KA+Q  RRG
Sbjct:   94 FSALGVSLVIHPQNPYVPTTHANVRFFVAEKEDSEP----VWWFGGGFDLTPYYGFVEDCEHWHQTALNACLPFGETIYPKFKRWCDDYFFIKHRNEARGIGGLFFDDYNEISFDHSFELMRSIGDHFILAYEPIVARRKDIPFGNREKAFQNYRRG 246          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_LEGPC (Coproporphyrinogen-III oxidase, aerobic OS=Legionella pneumophila (strain Corby) GN=hemF PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.383e-35
Identity = 70/157 (44.59%), Postives = 90/157 (57.32%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP+NP+ PT H N R+F  +     P     WWFGGG DLTP Y F ED +H+H T  +A   F  T YP+FK+WCDDYF+IKH          FFDD N+   +          +  I AY PI+ +RKD PF ++ KA+Q  RRG
Sbjct:   94 FSALGVSLVIHPQNPYVPTTHANVRFFVAEKEDSEP----VWWFGGGFDLTPYYGFVEDCEHWHQTALNACLPFGETIYPKFKRWCDDYFFIKHRNEARGIGGLFFDDYNEISFDHSFELMRSIGDHFILAYEPIVARRKDIPFGNREKAFQNYRRG 246          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_LEGPA (Coproporphyrinogen-III oxidase, aerobic OS=Legionella pneumophila (strain Paris) GN=hemF PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.383e-35
Identity = 70/157 (44.59%), Postives = 90/157 (57.32%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP+NP+ PT H N R+F  +     P     WWFGGG DLTP Y F ED +H+H T  +A   F  T YP+FK+WCDDYF+IKH          FFDD N+   +          +  I AY PI+ +RKD PF ++ KA+Q  RRG
Sbjct:   94 FSALGVSLVIHPQNPYVPTTHANVRFFVAEKEDSEP----VWWFGGGFDLTPYYGFVEDCEHWHQTALNACLPFGETIYPKFKRWCDDYFFIKHRNEARGIGGLFFDDYNEISFDHSFELMRSIGDHFILAYEPIVARRKDIPFGNREKAFQNYRRG 246          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_SHEON (Coproporphyrinogen-III oxidase, aerobic OS=Shewanella oneidensis GN=hemF PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.112e-35
Identity = 71/157 (45.22%), Postives = 93/157 (59.24%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HPKNP+ PT H N R+F   A KD  GA   WWFGGG DLTP Y FEEDV+ +H + K+    F    YP++KKWCD+YF++ H          FFDDLN    +    F     N  + AY PI+E+RKDT + ++ + +Q  RRG
Sbjct:   88 FEAMGVSLVIHPKNPYIPTTHANVRFFI--AHKD--GAEPVWWFGGGFDLTPYYPFEEDVREWHQSAKNLCQPFGDDVYPKYKKWCDEYFFLPHRNETRGVGGLFFDDLNQAGFDKSFDFMQAVGNGFLTAYAPIVERRKDTDYGERERDFQLYRRG 240          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_SALSV (Coproporphyrinogen-III oxidase, aerobic OS=Salmonella schwarzengrund (strain CVM19633) GN=hemF PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.112e-35
Identity = 70/157 (44.59%), Postives = 91/157 (57.96%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP+ PT H N R+F  + P    GA   WWFGGG DLTP Y FEED  H+H T +     F    YPR+KKWCDDYF++KH          FFDDLN  D +   +F     N   +AY+PI+E+RK   + ++ + +Q  RRG
Sbjct:   86 FEAMGVSLVVHPHNPYIPTSHANVRFFIAEKP----GADPVWWFGGGFDLTPYYGFEEDAVHWHRTARDLCQPFGDDVYPRYKKWCDDYFFLKHRNEQRGVGGLFFDDLNTPDFDHCFAFMQAVGNGYTQAYLPIVERRKAMVWGERERNFQLYRRG 238          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_PSEPG (Coproporphyrinogen-III oxidase, aerobic OS=Pseudomonas putida (strain GB-1) GN=hemF PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.112e-35
Identity = 68/157 (43.31%), Postives = 92/157 (58.60%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP  PT H N R+F  +      G    WWFGGG DLTP Y  EED  H+H   + A   F    YPR+K WCD YF++KH          FFDDLN++D +   +F     ++ + AY+PI+++RKDTP+T Q + +Q+ RRG
Sbjct:   87 FEALGVSLVIHPHNPHVPTSHANVRFFIAEKE----GEEAVWWFGGGFDLTPYYGNEEDCIHWHRVAEQACAPFGADVYPRYKAWCDRYFHLKHRGEPRGIGGLFFDDLNEWDFDTCFAFIRAIGDAYVNAYLPIVQRRKDTPYTPQQREFQEYRRG 239          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_LEGPL (Coproporphyrinogen-III oxidase, aerobic OS=Legionella pneumophila (strain Lens) GN=hemF PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.112e-35
Identity = 70/157 (44.59%), Postives = 90/157 (57.32%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP+NP+ PT H N R+F  +     P     WWFGGG DLTP Y F ED +H+H T  +A   F  T YP+FK+WCDDYF+IKH          FFDD N+   +          +  I AY PI+ +RKD PF ++ KA+Q  RRG
Sbjct:   94 FSALGVSLVIHPQNPYVPTTHANVRFFVAEKEDSEP----VWWFGGGFDLTPYYGFIEDCEHWHQTALNACLPFGETIYPKFKRWCDDYFFIKHRNEARGIGGLFFDDYNEISFDHSFELMRSIGDHFILAYEPIVARRKDIPFGNREKAFQNYRRG 246          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_BURCC (Coproporphyrinogen-III oxidase, aerobic OS=Burkholderia cenocepacia (strain MC0-3) GN=hemF PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.112e-35
Identity = 66/157 (42.04%), Postives = 92/157 (58.60%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S VLHP+NP+ PT+H N R      P + P     +WFGGG DLTP Y FE+D +HFH T K A D F    YPRFK+WCD+YF++KH          FFDD ++   E          ++ + AY+PI+E+R + P+ ++ + +Q  RRG
Sbjct:   93 FEALGVSLVLHPRNPYCPTVHMNVRMLIATKPGEAP----VFWFGGGMDLTPVYGFEDDARHFHQTCKDALDPFGAELYPRFKQWCDEYFFLKHRNETRGIGGIFFDDFSEPGFERSFDLMQSVGDAFLHAYLPIVERRAELPYGERERDFQAYRRG 245          
The following BLAST results are available for this feature:
BLAST of CX306419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
HEM6_SALAR2.383e-3544.59Coproporphyrinogen-III oxidase, aerobic OS=Salmone... [more]
HEM6_PSEP12.383e-3543.95Coproporphyrinogen-III oxidase, aerobic OS=Pseudom... [more]
HEM6_LEGPH2.383e-3544.59Coproporphyrinogen-III oxidase, aerobic OS=Legione... [more]
HEM6_LEGPC2.383e-3544.59Coproporphyrinogen-III oxidase, aerobic OS=Legione... [more]
HEM6_LEGPA2.383e-3544.59Coproporphyrinogen-III oxidase, aerobic OS=Legione... [more]
HEM6_SHEON3.112e-3545.22Coproporphyrinogen-III oxidase, aerobic OS=Shewane... [more]
HEM6_SALSV3.112e-3544.59Coproporphyrinogen-III oxidase, aerobic OS=Salmone... [more]
HEM6_PSEPG3.112e-3543.31Coproporphyrinogen-III oxidase, aerobic OS=Pseudom... [more]
HEM6_LEGPL3.112e-3544.59Coproporphyrinogen-III oxidase, aerobic OS=Legione... [more]
HEM6_BURCC3.112e-3542.04Coproporphyrinogen-III oxidase, aerobic OS=Burkhol... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC18017H02Rv Drought1 Citrus clementina cDNA clone C18017H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306419 ID=CX306419; Name=CX306419; organism=Citrus clementina; type=EST; length=558bp
GCGGGGTTGTTTATGGGGTCATGCCTCCTGAAGCTTATAGAGCTGCCAAA
GCTGCTGCTTCTGATGAGAAGCCCGGTCCCATTCCCTTTTTCGCTGCCGG
TATCAGCTCGGTTTTACACCCGAAGAACCCTTTTGCACCGACCTTGCATT
TTAATTATCGGTATTTTGAGACAGATGCACCAAAAGATACTCCTGGAGCA
CCTCGACAATGGTGGTTTGGCGGTGGAACAGATTTAACTCCTGCATATAT
CTTTGAAGAGGATGTTAAGCACTTCCATTCTACTCAAAAAAGTGCCCGCG
ACAAATTTGATCCTACCTTTTATCCTCGATTCAAGAAATGGTGTGATGAC
TATTTCTATATCAAGCATCGTGGTGAAAGACGAGGGCTTGGAGGACTATT
TTTTGATGATCTGAATGATTATGATCAGGAGATGCTTCTTTCTTTTGCTA
CTGAATGTGCAAATTCGGTGATTCGTGCTTACATACCCATTATAGAGAAG
AGAAAGGATACACCATTTACCGATCAGCATAAGGCATGGCAACAGTTGCG
CAGGGGAC
back to top