CX306419

Overview
NameCX306419
Unique NameCX306419
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_SHIF8 (Coproporphyrinogen-III oxidase, aerobic OS=Shigella flexneri serotype 5b (strain 8401) GN=hemF PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.308e-35
Identity = 70/157 (44.59%), Postives = 89/157 (56.69%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP+ PT H N R+F  + P    GA   WWFGGG DLTP Y FEED  H+H T +     F    YPR+KKWCDDYFY+KH          FFDDLN  D +   +F          AY+PI+E+RK   + ++ + +Q  RRG
Sbjct:   86 FEAMGVSLVVHPHNPYVPTSHANVRFFIAEKP----GAEPVWWFGGGFDLTPFYGFEEDAIHWHRTARDLCQPFGEDVYPRYKKWCDDYFYLKHRNEQRGIGGLFFDDLNTPDFDHCFAFMQAVGKGYTDAYLPIVERRKAMAYGERERNFQLYRRG 238          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_PECCP (Coproporphyrinogen-III oxidase, aerobic OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=hemF PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.308e-35
Identity = 68/157 (43.31%), Postives = 90/157 (57.32%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP +P+ PT H N R F  + P + P     WWFGGG DLTP Y F+ED  H+H T       F    YPR+KKWCDDYF++KH          FFDDLN+ D     +F     N  +  Y+PI+E+RKD P+ ++ + +Q  RRG
Sbjct:   86 FQAMGVSLVIHPLSPYIPTSHANVRLFIAEKPGEEP----VWWFGGGFDLTPYYGFKEDAVHWHQTAHDLCQPFGDEVYPRYKKWCDDYFFLKHRNEARGIGGLFFDDLNEPDFATSFAFIRAVGNGFLDGYLPIVERRKDLPWGEREREFQLYRRG 238          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_ENT38 (Coproporphyrinogen-III oxidase, aerobic OS=Enterobacter sp. (strain 638) GN=hemF PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.308e-35
Identity = 69/157 (43.95%), Postives = 91/157 (57.96%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP++PF PT H N R+F  + P    GA   WWFGGG DLTP Y FEED  H+H T +     F    YP++KKWCDDYFY+KH          FFDDLN  D +   +F          AY+PI+E+R++T +  + + +Q  RRG
Sbjct:   86 FEAMGVSLVVHPQSPFVPTSHANVRFFIAEKP----GADPVWWFGGGFDLTPYYGFEEDAVHWHRTARDICQPFGEEVYPKYKKWCDDYFYLKHRDEQRGIGGLFFDDLNAPDFDTAFNFMQAVGQGYTDAYLPIVERRRNTDYGVREREFQLYRRG 238          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_BURCJ (Coproporphyrinogen-III oxidase, aerobic OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=hemF PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.308e-35
Identity = 66/157 (42.04%), Postives = 92/157 (58.60%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S VLHP+NP+ PT+H N R      P + P     +WFGGG DLTP Y FE+D +HFH T K A D F    YPRFK+WCD+YF++KH          FFDD ++   E          ++ + AY+PI+E+R + P+ ++ + +Q  RRG
Sbjct:   93 FEALGVSLVLHPRNPYCPTVHMNVRMLIATKPGEAP----VFWFGGGMDLTPVYGFEDDARHFHQTCKDALDPFGIELYPRFKQWCDEYFFLKHRNETRGIGGIFFDDFSEPGFERSFDLMQSVGDAFLHAYLPIVERRAELPYGERERDFQAYRRG 245          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_BORPD (Coproporphyrinogen-III oxidase, aerobic OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=hemF PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.308e-35
Identity = 66/157 (42.04%), Postives = 94/157 (59.87%), Query Frame = 3
Query:   93 AAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQ--WWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            A G+S VLHP+NP+ PT H N R F   A    PG      +WFGGG DLTP Y FE+D +HFH   ++A D     +YP++K+WCD+YFY+KH          FFDDLN+   +   +      ++ + AY+PI+++R+DTP+T   + +Q  RRG
Sbjct:   89 AMGVSLVLHPRNPYVPTTHMNVRMFVAAA---RPGHDENDVFWFGGGLDLTPYYAFEDDARHFHQVCRAALDPHGAAYYPQYKRWCDEYFYLKHRQEMRGVGGVFFDDLNEPGFDASFALLRSVGDAFLPAYLPIVQRRRDTPYTQAQRDFQAYRRG 242          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM62_ANASP (Coproporphyrinogen-III oxidase, aerobic 2 OS=Anabaena sp. (strain PCC 7120) GN=hemF2 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.308e-35
Identity = 73/182 (40.11%), Postives = 97/182 (53.30%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFD----------------DLNDYDQ---------EMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            FFA G S VLHP+NP+ PT+H NYRYFE         A   WWFGGG DLTP Y F+ED  HFH T K+A D  +P +YP FK+WCD+YFY++H          FFD                 +  Y Q         E + +F   C  + + AY+PI+E+R+   + D+ + +Q  RRG
Sbjct:  113 FFATGTSMVLHPRNPYVPTVHLNYRYFE---------AGPIWWFGGGADLTPYYAFKEDAVHFHQTLKNACDVHNPEYYPTFKRWCDEYFYLRHREEQRGIGGIFFDYQDASGKLYVESQTDSSVAIYSQKVGNVARNWEDIFAFVQSCGQAFLPAYLPIVERRQGIEYGDRQRNFQLYRRG 285          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_THEEB (Coproporphyrinogen-III oxidase, aerobic OS=Thermosynechococcus elongatus (strain BP-1) GN=hemF PE=3 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 6.933e-35
Identity = 71/184 (38.59%), Postives = 96/184 (52.17%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEM---------------------------LLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F+A G S VLHP+NP+ PT+H NYRYFE         A   WWFGGG DLTP Y F ED KHFH   ++A D+    +YP FK+WCD+YFY+KH          FFD  +  D+E+                           L +F   C  + + AY+PI+E+R+   + D+ + +Q  RRG
Sbjct:   98 FYATGTSMVLHPRNPYVPTVHLNYRYFE---------AGPVWWFGGGADLTPYYPFAEDAKHFHQVHQAACDRHHREYYPVFKRWCDEYFYLKHRGETRGVGGIFFDYQDGSDRELYRGPNPDGEAARYSQRVGSIGSRSWEDLFAFIQSCGQAFLEAYLPIVERRRHLTYGDRERQFQLYRRG 272          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_SERP5 (Coproporphyrinogen-III oxidase, aerobic OS=Serratia proteamaculans (strain 568) GN=hemF PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 6.933e-35
Identity = 69/157 (43.95%), Postives = 89/157 (56.69%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP++P+ PT H N R+F  + P + P     WWFGGG DLTP Y FEED  H+H T +     F    YP++KKWCDDYF+IKH          FFDDLN  D     +F        + AY+PI+EKRK   + D  + +Q  RRG
Sbjct:   88 FQAMGVSLVIHPRSPYIPTSHANVRFFIAEKPGEEP----VWWFGGGFDLTPFYGFEEDAVHWHRTAERLCAPFGEQVYPKYKKWCDDYFFIKHRNEARGIGGLFFDDLNTPDFATCFAFTQAVGEGFLEAYLPIVEKRKTLSWGDHERQFQLYRRG 240          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_IDILO (Coproporphyrinogen-III oxidase, aerobic OS=Idiomarina loihiensis GN=hemF PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 6.933e-35
Identity = 66/157 (42.04%), Postives = 91/157 (57.96%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP+NP  PT+H N R+F      + P     WWFGGG DLTP Y F++D+  +H   K+A D  D   YP +K WCDDYF++KH          FFDDLND   +   S      ++  +AY+PI+E+RK+  +T Q + +Q  RRG
Sbjct:   88 FNACGVSLVMHPENPMVPTVHMNVRFFIAQKEGEEP----VWWFGGGFDLTPFYPFDQDIIEWHQQAKNALDSVDEKLYPEYKAWCDDYFFLKHRDEARGVGGIFFDDLNDRSFDECFSVIKAVGDAFTKAYLPIVERRKNLAYTQQQRDFQLYRRG 240          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_ECOSM (Coproporphyrinogen-III oxidase, aerobic OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=hemF PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 6.933e-35
Identity = 69/157 (43.95%), Postives = 89/157 (56.69%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP+ PT H N R+F  + P    GA   WWFGGG DLTP Y FEED  H+H T +     F    YPR+KKWCD+YFY+KH          FFDDLN  D +   +F          AY+PI+E+RK   + ++ + +Q  RRG
Sbjct:   86 FEAMGVSLVVHPHNPYVPTSHANVRFFIAEKP----GAEPVWWFGGGFDLTPFYGFEEDAIHWHRTARDLCQPFGEDVYPRYKKWCDEYFYLKHRNEQRGIGGLFFDDLNTPDFDHCFAFMQAVGKGYTNAYLPIVERRKTMAYGERERNFQLYRRG 238          
The following BLAST results are available for this feature:
BLAST of CX306419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
HEM6_SHIF85.308e-3544.59Coproporphyrinogen-III oxidase, aerobic OS=Shigell... [more]
HEM6_PECCP5.308e-3543.31Coproporphyrinogen-III oxidase, aerobic OS=Pectoba... [more]
HEM6_ENT385.308e-3543.95Coproporphyrinogen-III oxidase, aerobic OS=Enterob... [more]
HEM6_BURCJ5.308e-3542.04Coproporphyrinogen-III oxidase, aerobic OS=Burkhol... [more]
HEM6_BORPD5.308e-3542.04Coproporphyrinogen-III oxidase, aerobic OS=Bordete... [more]
HEM62_ANASP5.308e-3540.11Coproporphyrinogen-III oxidase, aerobic 2 OS=Anaba... [more]
HEM6_THEEB6.933e-3538.59Coproporphyrinogen-III oxidase, aerobic OS=Thermos... [more]
HEM6_SERP56.933e-3543.95Coproporphyrinogen-III oxidase, aerobic OS=Serrati... [more]
HEM6_IDILO6.933e-3542.04Coproporphyrinogen-III oxidase, aerobic OS=Idiomar... [more]
HEM6_ECOSM6.933e-3543.95Coproporphyrinogen-III oxidase, aerobic OS=Escheri... [more]

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Properties
Property NameValue
Genbank descriptionC18017H02Rv Drought1 Citrus clementina cDNA clone C18017H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306419 ID=CX306419; Name=CX306419; organism=Citrus clementina; type=EST; length=558bp
GCGGGGTTGTTTATGGGGTCATGCCTCCTGAAGCTTATAGAGCTGCCAAA
GCTGCTGCTTCTGATGAGAAGCCCGGTCCCATTCCCTTTTTCGCTGCCGG
TATCAGCTCGGTTTTACACCCGAAGAACCCTTTTGCACCGACCTTGCATT
TTAATTATCGGTATTTTGAGACAGATGCACCAAAAGATACTCCTGGAGCA
CCTCGACAATGGTGGTTTGGCGGTGGAACAGATTTAACTCCTGCATATAT
CTTTGAAGAGGATGTTAAGCACTTCCATTCTACTCAAAAAAGTGCCCGCG
ACAAATTTGATCCTACCTTTTATCCTCGATTCAAGAAATGGTGTGATGAC
TATTTCTATATCAAGCATCGTGGTGAAAGACGAGGGCTTGGAGGACTATT
TTTTGATGATCTGAATGATTATGATCAGGAGATGCTTCTTTCTTTTGCTA
CTGAATGTGCAAATTCGGTGATTCGTGCTTACATACCCATTATAGAGAAG
AGAAAGGATACACCATTTACCGATCAGCATAAGGCATGGCAACAGTTGCG
CAGGGGAC
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