CX306419
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Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_ECOLU (Coproporphyrinogen-III oxidase, aerobic OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=hemF PE=3 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 6.933e-35 Identity = 70/157 (44.59%), Postives = 89/157 (56.69%), Query Frame = 3
Query: 87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
F A GIS V+HP NP+ PT H N R+F + P GA WWFGGG DLTP Y FEED H+H T + F YPR+KKWCD+YFY+KH FFDDLN D + +F AY+PI+E+RK + ++ + +Q RRG
Sbjct: 86 FEAMGISLVVHPHNPYVPTSHANVRFFIAEKP----GAEPVWWFGGGFDLTPFYGFEEDAIHWHRTARDLCQPFGEDVYPRYKKWCDEYFYLKHRNEQRGIGGLFFDDLNTPDFDHCFAFMQAVGKGYTNAYLPIVERRKAMAYGERERNFQLYRRG 238
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_VIBCH (Coproporphyrinogen-III oxidase, aerobic OS=Vibrio cholerae GN=hemF PE=3 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 9.054e-35 Identity = 68/157 (43.31%), Postives = 90/157 (57.32%), Query Frame = 3
Query: 87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
F A G+S V+HPKNP+ PT H N R+F + + P WWFGGG DLTP Y F ED +H+H T K+ F Y K WCD YFY+ H FFDDLN++ E ++ +AY+PI+EKRK+TPFT++ + +Q RRG
Sbjct: 93 FEAMGVSLVMHPKNPYVPTSHANVRFFIAEKEGEAP----IWWFGGGFDLTPFYPFVEDGQHWHQTAKNICAPFGSEIYNEHKAWCDRYFYLPHRNETRGIGGLFFDDLNEWSFEQCFAYMQAVGEGYTQAYVPIVEKRKNTPFTERERQFQLYRRG 245
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_VIBC3 (Coproporphyrinogen-III oxidase, aerobic OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=hemF PE=3 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 9.054e-35 Identity = 68/157 (43.31%), Postives = 90/157 (57.32%), Query Frame = 3
Query: 87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
F A G+S V+HPKNP+ PT H N R+F + + P WWFGGG DLTP Y F ED +H+H T K+ F Y K WCD YFY+ H FFDDLN++ E ++ +AY+PI+EKRK+TPFT++ + +Q RRG
Sbjct: 93 FEAMGVSLVMHPKNPYVPTSHANVRFFIAEKEGEAP----IWWFGGGFDLTPFYPFVEDGQHWHQTAKNICAPFGSEIYNEHKAWCDRYFYLPHRNETRGIGGLFFDDLNEWSFEQCFAYMQAVGEGYTQAYVPIVEKRKNTPFTERERQFQLYRRG 245
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_SHIDS (Coproporphyrinogen-III oxidase, aerobic OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=hemF PE=3 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 9.054e-35 Identity = 70/157 (44.59%), Postives = 89/157 (56.69%), Query Frame = 3
Query: 87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
F A G+S V+HP NP+ PT H N R+F + P GA WWFGGG DLTP Y FEED H+H T + F YPR+KKWCDDYFY+KH FFDDLN D + +F AY+PI+E+RK + ++ + +Q RRG
Sbjct: 86 FEAMGVSLVVHPHNPYVPTSHANVRFFIAEKP----GAEPVWWFGGGFDLTPFYGFEEDAIHWHRTARDLCLPFGEDVYPRYKKWCDDYFYLKHRNEQRGIGGLFFDDLNTPDFDHCFAFMQAVGKGYTDAYLPIVERRKAMAYAERERNFQLYRRG 238
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_PSEAE (Coproporphyrinogen-III oxidase, aerobic OS=Pseudomonas aeruginosa GN=hemF PE=3 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 9.054e-35 Identity = 67/157 (42.68%), Postives = 92/157 (58.60%), Query Frame = 3
Query: 87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
F A G+S V+HP+NP PT H N R+F + + P WWFGGG DLTP Y EED H+H + A F YPR+K+WCD YF++KH FFDDLN +D + +F ++ I AY+PI+++RK TPF ++ + +Q RRG
Sbjct: 87 FQALGVSLVIHPENPHVPTSHANVRFFCAEKEGEEP----VWWFGGGFDLTPYYAHEEDCVHWHRVARDACAPFGADVYPRYKEWCDRYFHLKHRNEPRGIGGLFFDDLNQWDFDTCFAFIRAIGDAYIDAYLPIVQRRKHTPFDERQREFQAYRRG 239
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_PSEAB (Coproporphyrinogen-III oxidase, aerobic OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=hemF PE=3 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 9.054e-35 Identity = 67/157 (42.68%), Postives = 92/157 (58.60%), Query Frame = 3
Query: 87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
F A G+S V+HP+NP PT H N R+F + + P WWFGGG DLTP Y EED H+H + A F YPR+K+WCD YF++KH FFDDLN +D + +F ++ I AY+PI+++RK TPF ++ + +Q RRG
Sbjct: 87 FQALGVSLVIHPENPHVPTSHANVRFFCAEKEGEEP----VWWFGGGFDLTPYYAHEEDCVHWHRVARDACAPFGADVYPRYKEWCDRYFHLKHRNEPRGIGGLFFDDLNQWDFDTCFAFIRAIGDAYIDAYLPIVQRRKHTPFDERQREFQAYRRG 239
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_PSEA8 (Coproporphyrinogen-III oxidase, aerobic OS=Pseudomonas aeruginosa (strain LESB58) GN=hemF PE=3 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 9.054e-35 Identity = 67/157 (42.68%), Postives = 92/157 (58.60%), Query Frame = 3
Query: 87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
F A G+S V+HP+NP PT H N R+F + + P WWFGGG DLTP Y EED H+H + A F YPR+K+WCD YF++KH FFDDLN +D + +F ++ I AY+PI+++RK TPF ++ + +Q RRG
Sbjct: 87 FQALGVSLVIHPENPHVPTSHANVRFFCAEKEGEEP----VWWFGGGFDLTPYYAHEEDCVHWHRVARDACAPFGADVYPRYKEWCDRYFHLKHRNEPRGIGGLFFDDLNQWDFDTCFAFIRAIGDAYIDAYLPIVQRRKHTPFDERQREFQAYRRG 239
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_BURM1 (Coproporphyrinogen-III oxidase, aerobic OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=hemF PE=3 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 9.054e-35 Identity = 67/157 (42.68%), Postives = 91/157 (57.96%), Query Frame = 3
Query: 87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
F A G+S VLHP+NP+ PT+H N R P + P +WFGGG DLTP Y FE+D +HFH T K A D F YPRFKKWCD+YF++KH FFDD ++ E ++ + AY+PI+E+R P+ ++ + +Q RRG
Sbjct: 93 FEALGVSLVLHPRNPYCPTVHMNVRMLIATKPGEAP----IFWFGGGMDLTPVYGFEDDARHFHRTCKDALDPFGAELYPRFKKWCDEYFFLKHRNEMRGVGGIFFDDFSEPGFERSFEMMQSVGDAFLPAYLPIVERRAALPYGERERDFQAYRRG 245
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_PSEE4 (Coproporphyrinogen-III oxidase, aerobic OS=Pseudomonas entomophila (strain L48) GN=hemF PE=3 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 1.183e-34 Identity = 68/157 (43.31%), Postives = 92/157 (58.60%), Query Frame = 3
Query: 87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
F A G+S V+HP NP PT H N R+F + G WWFGGG DLTP Y EED H+H + A F YPR+K WCD YF++KH FFDDLN++D + +F ++ + AY+PII++RKDTP+T + + +Q+ RRG
Sbjct: 87 FEALGVSLVIHPHNPHVPTSHANVRFFIAEKE----GEEAVWWFGGGFDLTPYYGNEEDCVHWHRVAEQACAPFGADVYPRYKAWCDRYFHLKHRGEPRGIGGLFFDDLNEWDFDTCFAFMRAIGDAYVDAYLPIIQRRKDTPYTAKQREFQEYRRG 239
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_PSEA7 (Coproporphyrinogen-III oxidase, aerobic OS=Pseudomonas aeruginosa (strain PA7) GN=hemF PE=3 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 1.183e-34 Identity = 67/157 (42.68%), Postives = 92/157 (58.60%), Query Frame = 3
Query: 87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
F A G+S V+HP+NP PT H N R+F + + P WWFGGG DLTP Y EED H+H + A F YPR+K+WCD YF++KH FFDDLN +D + +F ++ I AY+PI+++RK TPF ++ + +Q RRG
Sbjct: 87 FQALGVSLVIHPENPHVPTSHANVRFFCAEKAGEEP----VWWFGGGFDLTPYYASEEDCVHWHRVARDACAPFGADVYPRYKEWCDRYFHLKHRNEPRGIGGLFFDDLNQWDFDTCFAFIRAIGDAYIDAYLPIVQRRKHTPFDERQREFQAYRRG 239 The following BLAST results are available for this feature:
BLAST of CX306419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 239
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Sequences
The
following sequences are available for this feature:
EST sequence >CX306419 ID=CX306419; Name=CX306419; organism=Citrus clementina; type=EST; length=558bpback to top |