CX307938

Overview
NameCX307938
Unique NameCX307938
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length406
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307938 vs. ExPASy Swiss-Prot
Match: MYB98_ARATH (Transcription factor MYB98 OS=Arabidopsis thaliana GN=MYB98 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.081e-12
Identity = 36/98 (36.73%), Postives = 56/98 (57.14%), Query Frame = 3
Query:   99 SQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRLVYIYKTTGGPKLQSI 392
            ++++ + KG WT EED +LI  +  +G   W+ +A+     R GK CR RW N+LRPD+K+   + EE  +++E H + GN+   I K   G    SI
Sbjct:  210 TKKSTLVKGQWTAEEDRVLIQLVEKYGLRKWSHIAQVLP-GRIGKQCRERWHNHLRPDIKKETWSEEEDRVLIEFHKEIGNKWAEIAKRLPGRTENSI 306          
BLAST of CX307938 vs. ExPASy Swiss-Prot
Match: AS1_ARATH (Transcription factor AS1 OS=Arabidopsis thaliana GN=AS1 PE=1 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 3.259e-12
Identity = 30/74 (40.54%), Postives = 45/74 (60.81%), Query Frame = 3
Query:  129 WTMEEDLILINYIANHGEGVWNSLAKAAG--LKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNR 344
            W+ EED +L  Y+   G   W+ +++     L R  KSC  RW NYL+P +K+G++T EEQ L++ L  K GN+
Sbjct:    7 WSGEEDALLRAYVRQFGPREWHLVSERMNKPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQEKHGNK 80          

HSP 2 Score: 25.7942 bits (55), Expect = 3.259e-12
Identity = 9/14 (64.29%), Postives = 11/14 (78.57%), Query Frame = 2
Query:  365 NRWSKIAKHLPGRT 406
            N+W KIA  +PGRT
Sbjct:   79 NKWKKIAAEVPGRT 92          
BLAST of CX307938 vs. ExPASy Swiss-Prot
Match: MYBB_MOUSE (Myb-related protein B OS=Mus musculus GN=Mybl2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.171e-11
Identity = 39/86 (45.35%), Postives = 47/86 (54.65%), Query Frame = 3
Query:  120 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLK-RTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRLVYIYKTTGG 374
            KGPWT EED  +I  +  +G   W  +AK   LK R GK CR RW N+L P+VK+   T EE  +I E H   GNR   I K   G
Sbjct:   83 KGPWTKEEDQKVIELVKKYGTKQWTLIAKH--LKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPG 166          
BLAST of CX307938 vs. ExPASy Swiss-Prot
Match: MYBB_HUMAN (Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.171e-11
Identity = 39/86 (45.35%), Postives = 47/86 (54.65%), Query Frame = 3
Query:  120 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLK-RTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRLVYIYKTTGG 374
            KGPWT EED  +I  +  +G   W  +AK   LK R GK CR RW N+L P+VK+   T EE  +I E H   GNR   I K   G
Sbjct:   83 KGPWTKEEDQKVIELVKKYGTKQWTLIAKH--LKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPG 166          
BLAST of CX307938 vs. ExPASy Swiss-Prot
Match: MYBB_XENLA (Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.529e-11
Identity = 36/85 (42.35%), Postives = 46/85 (54.12%), Query Frame = 3
Query:  120 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRLVYIYKTTGG 374
            KGPWT EED  +I  +  +G   W  +AK     R GK CR RW N+L P+VK+ + T EE  +I + H   GNR   I K   G
Sbjct:   83 KGPWTKEEDEKVIELVKKYGTKHWTLIAKQLR-GRMGKQCRERWHNHLNPEVKKSSWTEEEDRIICQAHKVLGNRWAEIAKLLPG 166          
The following BLAST results are available for this feature:
BLAST of CX307938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
MYB98_ARATH3.081e-1236.73Transcription factor MYB98 OS=Arabidopsis thaliana... [more]
AS1_ARATH3.259e-1240.54Transcription factor AS1 OS=Arabidopsis thaliana G... [more]
MYBB_MOUSE1.171e-1145.35Myb-related protein B OS=Mus musculus GN=Mybl2 PE=... [more]
MYBB_HUMAN1.171e-1145.35Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=... [more]
MYBB_XENLA1.529e-1142.35Myb-related protein B OS=Xenopus laevis GN=mybl2 P... [more]

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Properties
Property NameValue
Genbank descriptionC20003H05SK OF2 Citrus clementina cDNA clone C20003H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307938 ID=CX307938; Name=CX307938; organism=Citrus clementina; type=EST; length=406bp
AACCTTTCTCTTCCTCTTCTTTCTTCTTCTTCTTCTTCTTCTTCTCCTCC
TCTTAATTTCTCTATGTAAATTAAGAGATGGATAAAACTCCATGCAATTC
TCAAGAAGCTGAAGTCCGAAAGGGGCCATGGACCATGGAAGAAGACTTGA
TCCTCATCAACTATATAGCAAATCACGGCGAAGGCGTCTGGAACTCACTA
GCTAAAGCAGCTGGCCTAAAACGTACCGGAAAGAGTTGCCGGCTCAGGTG
GCTGAACTATCTCCGACCGGACGTTAAGAGGGGGAATATTACACCAGAGG
AGCAGCTTTTGATCATGGAGCTTCATGCCAAGTGGGGAAACAGGTTAGTA
TATATATACAAGACAACAGGTGGTCCAAAATTGCAAAGCATCTACCAGGA
AGGACC
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