CX308512

Overview
NameCX308512
Unique NameCX308512
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length610
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX308512_ssr53 microsatellite CX308512_ssr53:53..64. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9871 contig Ccv1_Contig9871:35..644. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX308512 vs. ExPASy Swiss-Prot
Match: RS17_MOUSE (40S ribosomal protein S17 OS=Mus musculus GN=Rps17 PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 9.667e-39
Identity = 77/122 (63.11%), Postives = 100/122 (81.97%), Query Frame = 1 
Query:   79 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 444
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122
[Close]
BLAST of CX308512 vs. ExPASy Swiss-Prot
Match: RS17_ICTPU (40S ribosomal protein S17 OS=Ictalurus punctatus GN=rps17 PE=2 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 9.667e-39
Identity = 77/122 (63.11%), Postives = 100/122 (81.97%), Query Frame = 1 
Query:   79 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 444
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122
[Close]
BLAST of CX308512 vs. ExPASy Swiss-Prot
Match: RS17_HUMAN (40S ribosomal protein S17 OS=Homo sapiens GN=RPS17 PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 9.667e-39
Identity = 77/122 (63.11%), Postives = 100/122 (81.97%), Query Frame = 1 
Query:   79 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 444
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122
[Close]
BLAST of CX308512 vs. ExPASy Swiss-Prot
Match: RS17_FELCA (40S ribosomal protein S17 OS=Felis catus GN=RPS17 PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 9.667e-39
Identity = 77/122 (63.11%), Postives = 100/122 (81.97%), Query Frame = 1 
Query:   79 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 444
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122
[Close]
BLAST of CX308512 vs. ExPASy Swiss-Prot
Match: RS17_CRIGR (40S ribosomal protein S17 OS=Cricetulus griseus GN=RPS17 PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 9.667e-39
Identity = 77/122 (63.11%), Postives = 100/122 (81.97%), Query Frame = 1 
Query:   79 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 444
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122
[Close]
BLAST of CX308512 vs. ExPASy Swiss-Prot
Match: RS17_COTJA (40S ribosomal protein S17 OS=Coturnix coturnix japonica GN=RPS17 PE=2 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 9.667e-39
Identity = 77/122 (63.11%), Postives = 100/122 (81.97%), Query Frame = 1 
Query:   79 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 444
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122
[Close]
BLAST of CX308512 vs. ExPASy Swiss-Prot
Match: RS17_CHICK (40S ribosomal protein S17 OS=Gallus gallus GN=RPS17 PE=2 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 9.667e-39
Identity = 77/122 (63.11%), Postives = 100/122 (81.97%), Query Frame = 1 
Query:   79 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 444
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122
[Close]
BLAST of CX308512 vs. ExPASy Swiss-Prot
Match: RS17_CANFA (40S ribosomal protein S17 OS=Canis familiaris GN=RPS17 PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 9.667e-39
Identity = 77/122 (63.11%), Postives = 100/122 (81.97%), Query Frame = 1 
Query:   79 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 444
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122
[Close]
BLAST of CX308512 vs. ExPASy Swiss-Prot
Match: RS17A_SCHPO (40S ribosomal protein S17-A OS=Schizosaccharomyces pombe GN=rps17a PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 9.667e-39
Identity = 77/114 (67.54%), Postives = 96/114 (84.21%), Query Frame = 1 
Query:   79 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDI 420
            MGRVRTKT K++SR VIE+YY R+TLDF TNK+I++EVAII SKRLRNKIAG++THLMKRIQ+GPVRGIS KLQEEERER+  +VP+ S ++ D + VD++T DML +LG   I
Sbjct:    1 MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQI 114
[Close]
BLAST of CX308512 vs. ExPASy Swiss-Prot
Match: RS17_RAT (40S ribosomal protein S17 OS=Rattus norvegicus GN=Rps17 PE=2 SV=3)

HSP 1 Score: 159.073 bits (401), Expect = 1.649e-38
Identity = 77/122 (63.11%), Postives = 99/122 (81.15%), Query Frame = 1 
Query:   79 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 444
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKNLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122
The following BLAST results are available for this feature:
BLAST of CX308512 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS17_MOUSE9.667e-3963.1140S ribosomal protein S17 OS=Mus musculus GN=Rps17... [more]
RS17_ICTPU9.667e-3963.1140S ribosomal protein S17 OS=Ictalurus punctatus G... [more]
RS17_HUMAN9.667e-3963.1140S ribosomal protein S17 OS=Homo sapiens GN=RPS17... [more]
RS17_FELCA9.667e-3963.1140S ribosomal protein S17 OS=Felis catus GN=RPS17 ... [more]
RS17_CRIGR9.667e-3963.1140S ribosomal protein S17 OS=Cricetulus griseus GN... [more]
RS17_COTJA9.667e-3963.1140S ribosomal protein S17 OS=Coturnix coturnix jap... [more]
RS17_CHICK9.667e-3963.1140S ribosomal protein S17 OS=Gallus gallus GN=RPS1... [more]
RS17_CANFA9.667e-3963.1140S ribosomal protein S17 OS=Canis familiaris GN=R... [more]
RS17A_SCHPO9.667e-3967.5440S ribosomal protein S17-A OS=Schizosaccharomyces... [more]
RS17_RAT1.649e-3863.1140S ribosomal protein S17 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC20010G09SK OF2 Citrus clementina cDNA clone C20010G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308512 ID=CX308512; Name=CX308512; organism=Citrus clementina; type=EST; length=610bp
ATCTCTTGACATCTCAAGCTCTTCTGCTTCACCGTCTTTGTCTTCTTCAA
GACAGCAGCAGCAGCTTCTTAAACTGAAATGGGTCGTGTTCGTACCAAGA
CCGTGAAGAAGTCCTCTCGCCAGGTGATTGAGAGGTACTACTCAAGAATG
ACACTGGACTTCCATACCAACAAGAAGATTTTGGAGGAGGTTGCTATCAT
CCCCTCGAAGAGGCTGCGTAACAAAATTGCTGGGTTCTCAACCCATTTGA
TGAAGAGGATTCAGAAGGGTCCAGTTCGTGGAATCTCCCTTAAATTGCAG
GAAGAGGAGCGCGAACGCCGCATGGACTTTGTGCCTGATGAGTCAGCTAT
TAAGACTGATGAAATTAAGGTTGACAAGGAAACCTTGGATATGCTTGCTG
CTCTTGGCATGTCTGACATTTCTGGGCTTGTTGAAGTTGAGCCACAGAGC
ATGATTGCTCCTCCAGTTTTTGGTCGGGGTGGTGGCAGGAGGTACTGAGT
TAATTGAGGCTTTGTGGCTCAATCAAGAATGAGAAGTTTAGGTTCTTATT
AATCAGTACTTCTTGTGTTTGTTATGAATGCTTTTGTGACTAGTTTTCTT
TACTATTTTA
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