CX308514

Overview
NameCX308514
Unique NameCX308514
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length566
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14574 contig Ccv1_Contig14574:337..902. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308514 vs. ExPASy Swiss-Prot
Match: MUG89_SCHPO (Meiotically up-regulated gene 89 protein OS=Schizosaccharomyces pombe GN=mug89 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.142e-22
Identity = 69/192 (35.94%), Postives = 101/192 (52.60%), Query Frame = 2
Query:   98 SKFTQQELPACKPILTPKWVILTFLVVGIAFVPIGITSLLASRDVVEIVDRYETDCIPVANRTDKVAFIQS---TAS------------------------------KTCTRQITVTKHMKRPVYVYYQLDNFYQNHRRYVKSRNDEQLKKRSKTSET---SQCEPEDTTPNGKPIVPCGLIAWSLFNDTYT 565
            + F QQ + + +P+LTPK V+  F V+GI F P+G   L AS  V E+V  Y TDC  +A+  D+ + + S   TAS                                C  + TV   +K P+++YY+L NF+QNHRRY KS +++QL+  + T++      C P +   + KP  PCGLIA SLFNDT++
Sbjct:   27 TSFRQQRIKSWQPLLTPKIVLPLFFVLGIIFGPLGGGLLYASSIVQELVVDY-TDCETLASY-DEFSAVPSKKYTASFDQSGTIGFDKESTYWKLEKILDKDLDMDVNYCIIRFTVPSVLKAPIFIYYRLTNFFQNHRRYAKSVDEKQLQGVALTADEVKGGNCFPLEVNEDDKPYYPCGLIANSLFNDTFS 216          
BLAST of CX308514 vs. ExPASy Swiss-Prot
Match: CC50B_MOUSE (Cell cycle control protein 50B OS=Mus musculus GN=Tmem30b PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.252e-19
Identity = 58/161 (36.02%), Postives = 84/161 (52.17%), Query Frame = 2
Query:  104 FTQQELPACKPILTPKWVILTFLVVGIAFVPIGITSLLASRDVVEIVDRYET-----DCIPVANRTDKVAFIQSTASKTCTRQITVTKHMKRPVYVYYQLDNFYQNHRRYVKSRNDEQLKKRSKT--SETSQCEPEDTTPNGKPIVPCGLIAWSLFNDTYT 565
            FTQQ LPA +P+L+    +  F   G+AF+ +G+    +S  + E+   Y       DC   A +    A     A   C+   T+ +    PVY+YY+L NFYQN+RRY  SR+D QL   +       ++C P     +G PI PCG IA SLFND+++
Sbjct:   18 FTQQRLPAWQPLLSAGIALPLFFCAGLAFIGLGLGLFYSSNGIKELEYDYTGNPGTGDCSVCAAKGQGRAPPPGCA---CSWSFTLPELFPGPVYLYYELSNFYQNNRRYGVSRDDAQLSGLASALRHPANECAPYQFRSDGLPIAPCGAIANSLFNDSFS 175          
BLAST of CX308514 vs. ExPASy Swiss-Prot
Match: YN8S_YEAST (Uncharacterized protein YNR048W OS=Saccharomyces cerevisiae GN=YNR048W PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.247e-19
Identity = 62/179 (34.64%), Postives = 93/179 (51.96%), Query Frame = 2
Query:   98 SKFTQQELPACKPILTPKWVILTFLVVGIAFVPIGITSLLASRDVVEIVDRY-ETDCIPVANRTDKVA-------FIQSTA--------------SKTCTRQITVTKHMKRPVYVYYQLDNFYQNHRRYVKSRNDEQLKKRSKTSE--TSQCEPEDTTPNGKPIVPCGLIAWSLFNDTY 562
            + F QQ L A +PIL+P+ V+   +++   F PIGI  ++++  V  +V  Y E D +  A   + +        F +  A              ++TC  Q  V  H+K+  YVYY+L NF QN+R YV+S + +QLK ++         C+P  T  N K I PCGLIA S+FNDT+
Sbjct:   28 TSFRQQRLKAWQPILSPQSVLPLLILMACVFAPIGIGLVVSTISVQRLVVNYTECDALAPAKHFETIPSEYVDYHFSKKVAVQPQWMVLTDPELGNQTCRIQFEVPNHIKKSTYVYYRLTNFNQNYREYVQSLDLDQLKGKALIGNDLDPNCDPLRTVEN-KTIFPCGLIANSMFNDTF 205          
BLAST of CX308514 vs. ExPASy Swiss-Prot
Match: CC50A_RAT (Cell cycle control protein 50A OS=Rattus norvegicus GN=Tmem30a PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.546e-19
Identity = 58/154 (37.66%), Postives = 76/154 (49.35%), Query Frame = 2
Query:  104 FTQQELPACKPILTPKWVILTFLVVGIAFVPIGITSLLASRDVVEIVDRYETDCIPVANRTDKVAFIQSTASKTCTRQITVTKHMKRPVYVYYQLDNFYQNHRRYVKSRNDEQLK--KRSKTSETSQCEPEDTTPNGKPIVPCGLIAWSLFNDT 559
            F QQ LPA +PILT   V+ TF ++G+ F+PIGI   + S ++ EI                                          V++YY L NFYQNHRRYVKSR+D QL     +  + + +CEP     + KPI PCG IA S+FNDT
Sbjct:   33 FKQQRLPAWQPILTAGTVLPTFFIIGLIFIPIGIGIFVTSNNIREIEGN---------------------------------------VFMYYGLSNFYQNHRRYVKSRDDSQLNGDPSALLNPSKECEPYRRNED-KPIAPCGAIANSMFNDT 146          
BLAST of CX308514 vs. ExPASy Swiss-Prot
Match: CC50B_HUMAN (Cell cycle control protein 50B OS=Homo sapiens GN=TMEM30B PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.460e-19
Identity = 57/159 (35.85%), Postives = 85/159 (53.46%), Query Frame = 2
Query:  104 FTQQELPACKPILTPKWVILTFLVVGIAFVPIGITSLLASRDVVEIVDRYETDCIPVANRTDKVAFIQSTASK---TCTRQITVTKHMKRPVYVYYQLDNFYQNHRRYVKSRNDEQLK--KRSKTSETSQCEPEDTTPNGKPIVPCGLIAWSLFNDTYT 565
            FTQQ LPA +P+L+    +  F   G+AF+ +G+    +S  + E+   Y  D     N +   A  Q  A     +C    ++ +  + PVY+YY+L NFYQN+RRY  SR+D QL     +     ++C P   +  G PI PCG IA SLFND+++
Sbjct:   18 FTQQRLPAWQPLLSASIALPLFFCAGLAFIGLGLGLYYSSNGIKELEYDYTGDP-GTGNCSVCAAAGQGRALPPPCSCAWYFSLPELFQGPVYLYYELTNFYQNNRRYGVSRDDAQLSGLPSALRHPVNECAPYQRSAAGLPIAPCGAIANSLFNDSFS 175          
BLAST of CX308514 vs. ExPASy Swiss-Prot
Match: CC50C_MACFA (Cell cycle control protein 50C OS=Macaca fascicularis GN=TMEM30C PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.132e-18
Identity = 56/154 (36.36%), Postives = 77/154 (50.00%), Query Frame = 2
Query:   98 SKFTQQELPACKPILTPKWVILTFLVVGIAFVPIGITSLLASRDVVEIVDRYETDCIPVANRTDKVAFIQSTASKTCTRQITVTKHMKRPVYVYYQLDNFYQNHRRYVKSRNDEQLKKRSKTSETSQCEPEDTTPNGKPIVPCGLIAWSLFNDT 559
            S   QQELPA +   T + V+  F   GI  + +GI  +L++R   EI   Y   C   A   +  +        TC+    ++  M   VY+YY+L  FYQN  RYV+SR++ QL  +        C P   + N  PIVPCG IA S+FNDT
Sbjct:   16 SALKQQELPAHRLYFTARRVLFVFFTTGIFCLCMGIILILSARSTQEIEINYTRICANCAKLRENASNFDKEC--TCSIPFYLSGKMMGNVYMYYKLYGFYQNLYRYVRSRSNRQLVGKD-VKAVEDCAPFKMSDNKTPIVPCGAIANSMFNDT 166          
BLAST of CX308514 vs. ExPASy Swiss-Prot
Match: LEM3_YEAST (Alkylphosphocholine resistance protein LEM3 OS=Saccharomyces cerevisiae GN=LEM3 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.009e-18
Identity = 60/187 (32.09%), Postives = 87/187 (46.52%), Query Frame = 2
Query:  104 FTQQELPACKPILTPKWVILTFLVVGIAFVPIGITSLLASRDVVEIVDRYETDCIPVA----------------------NRTDKVAFIQSTASK------TCTRQITVTKHMKRPVYVYYQLDNFYQNHRRYVKSRNDEQLKKRSKTSET------SQCEPEDTTPNGKPIVPCGLIAWSLFNDTY 562
            FTQQ L A  P+LTP+ V+  +L++ + FV +G   +LA    V+ V  Y  DC+  A                      N   +  F+   +        TC  + T    MK  VY+ Y L+ F  NHRRYV S +++Q++    + ET        C+P     +GK   PCGLIA S+FNDT+
Sbjct:   58 FTQQRLAAINPVLTPRTVLPLYLLIAVVFVIVG-GCILAQNSKVDEVTIYYQDCMTNATSSWSDIPSEHWQFVFHKYKTYNTAPQWRFVDDESDDFTKQRGTCQIRFTTPSDMKNNVYLNYVLEKFAANHRRYVLSFSEDQIRGEDASYETVHDATGINCKPLSKNADGKIYYPCGLIANSMFNDTF 243          
BLAST of CX308514 vs. ExPASy Swiss-Prot
Match: CC50C_BOVIN (Cell cycle control protein 50C OS=Bos taurus GN=TMEM30C PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.366e-17
Identity = 51/150 (34.00%), Postives = 80/150 (53.33%), Query Frame = 2
Query:  110 QQELPACKPILTPKWVILTFLVVGIAFVPIGITSLLASRDVVEIVDRYETDCIPVANRTDKVAFIQSTASKTCTRQITVTKHMKRPVYVYYQLDNFYQNHRRYVKSRNDEQLKKRSKTSETSQCEPEDTTPNGKPIVPCGLIAWSLFNDT 559
            QQ+LPA +  LT   ++  F  +G+  + +GI  LL+++ + E+   Y   C   A   ++        +  C+    + + M+  VY+YY+L  FYQN  RY+ SR++ QL   +   +   C P  T+ NG PI PCG IA S+FNDT
Sbjct:   20 QQQLPAFRLQLTASEILSGFFAIGLFCLGMGIILLLSAKSIKEVEINYTEKCATCAKLREEATNFDKECN--CSISFYLPQKMEGNVYLYYKLYGFYQNLYRYILSRSNIQLVG-ADVKDVRNCAPFRTSDNGLPIAPCGAIANSMFNDT 166          
BLAST of CX308514 vs. ExPASy Swiss-Prot
Match: CDC50_YEAST (Cell division control protein 50 OS=Saccharomyces cerevisiae GN=CDC50 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.973e-16
Identity = 55/177 (31.07%), Postives = 89/177 (50.28%), Query Frame = 2
Query:  104 FTQQELPACKPILTPKWVILTFLVVGIAFVPIGITSLLASRDVVEIVDRYET----------DCIP-----------VANRTDKVAFIQSTASKTCTRQITVTKHMKRPVYVYYQLDNFYQNHRRYVKSRNDEQL--KKRSKTSETSQCEPEDTTPNGKPIVPCGLIAWSLFNDTYT 565
            F QQ L A +PIL+P+ V+   + V   F PIGI  ++++  V ++   Y            + IP           V N+            ++C  Q  +   +K+ +++YY++ NFYQNHRRYV+S + +Q+  +   K    + C P  +  + K I PCGLIA S+FNDT++
Sbjct:   28 FRQQRLKAWQPILSPQSVLPLLIFVACIFTPIGIGLIVSATKVQDLTIDYSHCDTKASTTAFEDIPKKYIKYHFKSKVENKPQWRLTENENGEQSCELQFEIPNDIKKSIFIYYKITNFYQNHRRYVQSFDTKQILGEPIKKDDLDTSCSPIRSRED-KIIYPCGLIANSMFNDTFS 203          
BLAST of CX308514 vs. ExPASy Swiss-Prot
Match: CC50C_MOUSE (Cell cycle control protein 50C OS=Mus musculus GN=Tmem30c PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.670e-15
Identity = 52/154 (33.77%), Postives = 79/154 (51.30%), Query Frame = 2
Query:  110 QQELPACKPILTPKWVILTFLVVGIAFVPIGITSLLASRDVVEIVDRYETDCIPVANRTDKVAFIQSTASKTCTRQIT--VTKHMKRPVYVYYQLDNFYQNHRRYVKSRNDEQLKKRSKTSETSQCEPEDTTPNGKPIVPCGLIAWSLFNDTYT 565
            QQ LP  +  L+   V+  F + G   + IGI  LL+++   +I   Y   C   A   +      S   K C   +   + + M+  VY+YY+L  FYQN  +Y+ SR++ QL  +    +T+ C+P   + N  PI+PCG IA S+FNDT T
Sbjct:   20 QQTLPTQQLNLSASVVLSIFFITGGFCLSIGIILLLSAKSTKKIEINYTKTCANCAQLREN----SSNFDKACNYSLPFYLPEKMEGDVYMYYKLYGFYQNLYQYILSRSNSQLVGKD-IWDTTNCDPFQVSHNDTPIIPCGAIANSIFNDTIT 168          
The following BLAST results are available for this feature:
BLAST of CX308514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
MUG89_SCHPO9.142e-2235.94Meiotically up-regulated gene 89 protein OS=Schizo... [more]
CC50B_MOUSE3.252e-1936.02Cell cycle control protein 50B OS=Mus musculus GN=... [more]
YN8S_YEAST4.247e-1934.64Uncharacterized protein YNR048W OS=Saccharomyces c... [more]
CC50A_RAT5.546e-1937.66Cell cycle control protein 50A OS=Rattus norvegicu... [more]
CC50B_HUMAN9.460e-1935.85Cell cycle control protein 50B OS=Homo sapiens GN=... [more]
CC50C_MACFA6.132e-1836.36Cell cycle control protein 50C OS=Macaca fascicula... [more]
LEM3_YEAST8.009e-1832.09Alkylphosphocholine resistance protein LEM3 OS=Sac... [more]
CC50C_BOVIN1.366e-1734.00Cell cycle control protein 50C OS=Bos taurus GN=TM... [more]
CDC50_YEAST1.973e-1631.07Cell division control protein 50 OS=Saccharomyces ... [more]
CC50C_MOUSE1.670e-1533.77Cell cycle control protein 50C OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC20010G11SK OF2 Citrus clementina cDNA clone C20010G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308514 ID=CX308514; Name=CX308514; organism=Citrus clementina; type=EST; length=566bp
GAATTCCAATGCGGCGTCGTCCAGCACGGCCAATCCCGACGCTGCTGGAT
CCCCTGATCCTCCGGCTCCCAGGCGAAGCTCTAAGCGACCCAAGTATTCC
AAGTTTACTCAACAGGAGCTTCCGGCTTGCAAGCCGATTCTTACTCCGAA
ATGGGTGATTCTAACATTTTTGGTCGTTGGCATTGCGTTCGTCCCGATTG
GAATTACTTCCCTCCTTGCTTCCCGAGATGTTGTTGAAATTGTTGATCGA
TACGAGACTGATTGCATACCAGTAGCTAATAGGACTGACAAGGTGGCATT
TATTCAGAGTACTGCAAGTAAAACATGCACCAGACAAATTACTGTGACAA
AGCATATGAAGCGGCCTGTCTATGTGTACTATCAACTCGATAATTTCTAC
CAGAATCATCGCAGATATGTTAAGAGCCGAAATGATGAGCAGTTGAAAAA
ACGGAGTAAAACAAGTGAAACATCTCAGTGTGAGCCCGAAGATACCACCC
CAAATGGAAAGCCCATTGTCCCTTGTGGCCTTATTGCTTGGAGTTTGTTT
AACGATACATACACTT
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