CX308516

Overview
NameCX308516
Unique NameCX308516
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length566
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11254 contig Ccv1_Contig11254:115..676. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_EXISA (10 kDa chaperonin OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=groS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.666e-13
Identity = 40/91 (43.96%), Postives = 55/91 (60.44%), Query Frame = 2
Query:  296 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKP-QXXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            +KPLGDRV++++   EEKT GGI LP TA+ KP Q                 +D+ VK    VIYSKYA TE++ +G  +LI+RE D++ I
Sbjct:    2 LKPLGDRVIIEVVEKEEKTIGGIVLPDTAKEKPQQGKVVAVGTGRVTDEGKRIDLDVKENDLVIYSKYAGTEVKHDGKEYLIVRESDILAI 92          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_DESVV (10 kDa chaperonin OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=groS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.666e-13
Identity = 38/92 (41.30%), Postives = 56/92 (60.87%), Query Frame = 2
Query:  293 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXXL-DISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            ++KPL DRVLVK    EEKT GG+++P TA+ KP                  L  ++VK G  V+++KYA TE++ +G  HL++REDD++ I
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAAGPGKTADDGKLVAMTVKAGDMVLFNKYAGTEIKIDGVEHLVMREDDILAI 93          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_DESVH (10 kDa chaperonin OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=groS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.666e-13
Identity = 38/92 (41.30%), Postives = 56/92 (60.87%), Query Frame = 2
Query:  293 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXXL-DISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            ++KPL DRVLVK    EEKT GG+++P TA+ KP                  L  ++VK G  V+++KYA TE++ +G  HL++REDD++ I
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAAGPGKTADDGKLVAMTVKAGDMVLFNKYAGTEIKIDGVEHLVMREDDILAI 93          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_LAWIP (10 kDa chaperonin OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.548e-13
Identity = 37/92 (40.22%), Postives = 56/92 (60.87%), Query Frame = 2
Query:  293 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXXL-DISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            ++KPL DRVLVK    EEKT GG+++P TA+ KP                  L  ++VK G  V+++KYA TE++ +G  HL++REDD++ +
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAVGPGKHTDDGKLIPMAVKAGDTVLFNKYAGTEVKLDGVEHLVMREDDILAV 93          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_LAWIN (10 kDa chaperonin OS=Lawsonia intracellularis GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.548e-13
Identity = 37/92 (40.22%), Postives = 56/92 (60.87%), Query Frame = 2
Query:  293 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXXL-DISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            ++KPL DRVLVK    EEKT GG+++P TA+ KP                  L  ++VK G  V+++KYA TE++ +G  HL++REDD++ +
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAVGPGKHTDDGKLIPMAVKAGDTVLFNKYAGTEVKLDGVEHLVMREDDILAV 93          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_CLOPS (10 kDa chaperonin OS=Clostridium perfringens (strain SM101 / Type A) GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.548e-13
Identity = 38/91 (41.76%), Postives = 53/91 (58.24%), Query Frame = 2
Query:  293 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            SIKPLGDRV++K    EE T  GI +  TA+ +PQ                  ++ VK G +V+YSKYA TE++F G  + ILR+DD++ I
Sbjct:    2 SIKPLGDRVVIKRLEAEETTKSGIIVTGTAKERPQEAEVVAVGPGAIIDGKRTEMEVKIGDKVLYSKYAGTEVKFEGEEYTILRQDDILAI 92          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_CLOPE (10 kDa chaperonin OS=Clostridium perfringens GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.548e-13
Identity = 38/91 (41.76%), Postives = 53/91 (58.24%), Query Frame = 2
Query:  293 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            SIKPLGDRV++K    EE T  GI +  TA+ +PQ                  ++ VK G +V+YSKYA TE++F G  + ILR+DD++ I
Sbjct:    2 SIKPLGDRVVIKRLEAEETTKSGIIVTGTAKERPQEAEVVAVGPGAIVDGKRTEMEVKIGDKVLYSKYAGTEVKFEGEEYTILRQDDILAI 92          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_CLOP1 (10 kDa chaperonin OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.548e-13
Identity = 38/91 (41.76%), Postives = 53/91 (58.24%), Query Frame = 2
Query:  293 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            SIKPLGDRV++K    EE T  GI +  TA+ +PQ                  ++ VK G +V+YSKYA TE++F G  + ILR+DD++ I
Sbjct:    2 SIKPLGDRVVIKRLEAEETTKSGIIVTGTAKERPQEAEVVAVGPGAIVDGKRTEMEVKIGDKVLYSKYAGTEVKFEGEEYTILRQDDILAI 92          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_SYNJB (10 kDa chaperonin OS=Synechococcus sp. GN=groS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.939e-13
Identity = 40/93 (43.01%), Postives = 56/93 (60.22%), Query Frame = 2
Query:  290 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXXL-DISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            +++KPLGDRVLVKI   +EKT GGIFLP TA+ KPQ                 L  + +K G +V+YSKYA TE++     +++L E D++ I
Sbjct:    9 STLKPLGDRVLVKIAQQDEKTAGGIFLPDTAKEKPQVGEVVAVGPGKRNDEGKLIPMELKAGDKVLYSKYAGTEVKLGSDEYVLLAERDILAI 101          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_SYNJA (10 kDa chaperonin OS=Synechococcus sp. (strain JA-3-3Ab) GN=groS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.939e-13
Identity = 40/93 (43.01%), Postives = 56/93 (60.22%), Query Frame = 2
Query:  290 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXXL-DISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            +++KPLGDRVLVKI   +EKT GGIFLP TA+ KPQ                 L  + +K G +V+YSKYA TE++     +++L E D++ I
Sbjct:    9 STLKPLGDRVLVKIAQQDEKTAGGIFLPDTAKEKPQVGEVVAVGPGKRNDEGKLIPMELKAGDRVLYSKYAGTEVKLGSDEYVLLAERDILAI 101          
The following BLAST results are available for this feature:
BLAST of CX308516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 131
Match NameE-valueIdentityDescription
CH10_EXISA2.666e-1343.9610 kDa chaperonin OS=Exiguobacterium sp. (strain A... [more]
CH10_DESVV2.666e-1341.3010 kDa chaperonin OS=Desulfovibrio vulgaris subsp.... [more]
CH10_DESVH2.666e-1341.3010 kDa chaperonin OS=Desulfovibrio vulgaris (strai... [more]
CH10_LAWIP4.548e-1340.2210 kDa chaperonin OS=Lawsonia intracellularis (str... [more]
CH10_LAWIN4.548e-1340.2210 kDa chaperonin OS=Lawsonia intracellularis GN=g... [more]
CH10_CLOPS4.548e-1341.7610 kDa chaperonin OS=Clostridium perfringens (stra... [more]
CH10_CLOPE4.548e-1341.7610 kDa chaperonin OS=Clostridium perfringens GN=gr... [more]
CH10_CLOP14.548e-1341.7610 kDa chaperonin OS=Clostridium perfringens (stra... [more]
CH10_SYNJB5.939e-1343.0110 kDa chaperonin OS=Synechococcus sp. GN=groS PE=... [more]
CH10_SYNJA5.939e-1343.0110 kDa chaperonin OS=Synechococcus sp. (strain JA-... [more]

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Properties
Property NameValue
Genbank descriptionC20010H01SK OF2 Citrus clementina cDNA clone C20010H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308516 ID=CX308516; Name=CX308516; organism=Citrus clementina; type=EST; length=566bp
ATCTTCTCGACTCTTCTTCAAATTTCAACTAGAAACCTTATCAAACTACT
CGCTCGCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCTCACTCT
GCATCTGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAATTAAG
GTTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAAACCGTCTTCCAG
TCAAGTTCGCTTCCGTCTGAGGTGCTCCCAGCCAACGCTCTTTCCGTCGC
TTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAATTAA
ACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAGAAAA
CTGATGGTGGTATTTTTCTGCCATCTACAGCTCAAACAAAACCTCAAGCA
GGTGAGGTGGTAGCTGTTGGCTAGGGGAAGACAGTTGGGAAGACTAAACT
GGACATATCTGTGAAGCCTGGGACCCAAGTCATCTATTCGAAGTATGCAT
GGACTGAGTTGGAGTTCAATGGCGCACATCATCTCATATTGAGGGAGGAT
GACGTAGTTGGCATTC
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