CX308516

Overview
NameCX308516
Unique NameCX308516
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length566
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11254 contig Ccv1_Contig11254:115..676. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_CYAP7 (10 kDa chaperonin OS=Cyanothece sp. (strain PCC 7424) GN=groS PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.257e-12
Identity = 38/91 (41.76%), Postives = 53/91 (58.24%), Query Frame = 2
Query:  290 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXXLD-ISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVV 559
            +++KPLGDRV VK+   EEKT GGI LP TA+ KPQ                    I VK G +V+YSKYA T+++  G  +++L E D++
Sbjct:    9 STVKPLGDRVFVKVSPSEEKTAGGILLPDTAKEKPQLGEVVAVGPGKRNDDGSRSPIEVKVGDKVLYSKYAGTDIKLGGEDYVLLSEKDIL 99          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_CYAA5 (10 kDa chaperonin OS=Cyanothece sp. (strain ATCC 51142) GN=groS PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.257e-12
Identity = 36/91 (39.56%), Postives = 54/91 (59.34%), Query Frame = 2
Query:  290 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQ-XXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVV 559
            +++KPLGDR+ VK+   EEKT GGI LP  AQ KPQ                   ++ VK G +V+YSKYA T+++ +G  +++L E D++
Sbjct:    9 STVKPLGDRIFVKVSPAEEKTAGGILLPDNAQEKPQIGEVVAVGPGKRNDDGSRSELDVKVGDKVLYSKYAGTDVKLSGEDYVLLSEKDIL 99          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_CYAP8 (10 kDa chaperonin OS=Cyanothece sp. (strain PCC 8801) GN=groS PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.948e-12
Identity = 37/93 (39.78%), Postives = 54/93 (58.06%), Query Frame = 2
Query:  290 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQ-XXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            +++KPLGDRV VK+   EEKT GGI LP TA+ KPQ                   +  VK G +V+YSKYA T+++  G  +++L E D++ +
Sbjct:    9 STVKPLGDRVFVKVSASEEKTAGGILLPDTAKEKPQIGEIVTVGPGKRNDDGSRSEPEVKVGDKVLYSKYAGTDIKLGGEDYVLLSEKDILAV 101          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_CLONN (10 kDa chaperonin OS=Clostridium novyi (strain NT) GN=groS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.948e-12
Identity = 36/90 (40.00%), Postives = 54/90 (60.00%), Query Frame = 2
Query:  296 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            IKPLGDRV++K    EEKT  GI LP +A+ KPQ                 + + VK G +V++SKY+ TE++ +G  + ILR++D++ I
Sbjct:    3 IKPLGDRVVIKRLEAEEKTKSGIVLPGSAKEKPQEAEIVAVGPGGLVDGKEVRMEVKVGDKVLFSKYSGTEVKLDGEEYTILRQNDILAI 92          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_CLOBO (10 kDa chaperonin OS=Clostridium botulinum GN=groS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.948e-12
Identity = 35/90 (38.89%), Postives = 55/90 (61.11%), Query Frame = 2
Query:  296 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            IKPLGDRV++K    EEKT  GI LP +A+ KPQ                 +++ VK G +V++S+YA  E++ +G  ++ILR++D++ I
Sbjct:    3 IKPLGDRVVIKRLEAEEKTKSGIVLPGSAKEKPQEAEIVAVGPGGLVDGKEVNMEVKVGDRVLFSQYAGNEVKIDGEEYIILRQNDILAI 92          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_PELPB (10 kDa chaperonin OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=groS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.850e-12
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 2
Query:  293 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQ-XXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            ++KPL DRV+VK    EEKT GG+++P T + KPQ                  L++ VK G++V+Y KY+ TE+   G  +LI+RE D+  I
Sbjct:    2 NLKPLSDRVIVKPAAAEEKTKGGLYIPDTGKEKPQYGEVVAVGAGKIADNGQLLEMQVKVGSKVLYGKYSGTEVSVEGEDYLIMRESDIFAI 93          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_LEPIN (10 kDa chaperonin OS=Leptospira interrogans GN=groS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.850e-12
Identity = 36/91 (39.56%), Postives = 52/91 (57.14%), Query Frame = 2
Query:  293 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            SIKPLGDRVLV+ +   E+  G IF+P TA+ KPQ                 + + VK G  V+Y KY+ TE++  G  +LI+RE D++ +
Sbjct:    3 SIKPLGDRVLVEPRQEAEEKIGSIFVPDTAKEKPQEGKVVEIGSGKYEDGKLIPLEVKVGDTVLYGKYSGTEIKSEGKEYLIIRESDILAV 93          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_LEPIC (10 kDa chaperonin OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=groS PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.850e-12
Identity = 36/91 (39.56%), Postives = 52/91 (57.14%), Query Frame = 2
Query:  293 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            SIKPLGDRVLV+ +   E+  G IF+P TA+ KPQ                 + + VK G  V+Y KY+ TE++  G  +LI+RE D++ +
Sbjct:    3 SIKPLGDRVLVEPRQEAEEKIGSIFVPDTAKEKPQEGKVVEIGSGKYEDGKLIPLEVKVGDTVLYGKYSGTEIKSEGKEYLIIRESDILAV 93          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_BACTR (10 kDa chaperonin OS=Bacillus thermoglucosidasius GN=groS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.850e-12
Identity = 38/91 (41.76%), Postives = 55/91 (60.44%), Query Frame = 2
Query:  296 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQ-XXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            IKPLGDRV+++I   EEKT  GI LP TA+ KPQ                  +   V+ G ++I+SKYA TE++++G  +LILRE D++ +
Sbjct:    2 IKPLGDRVVIEIVETEEKTASGIVLPDTAKEKPQEGKVVAVGKGRVLDNGQRVAPEVEVGDRIIFSKYAGTEVKYDGKEYLILRESDILAV 92          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_BACSU (10 kDa chaperonin OS=Bacillus subtilis GN=groS PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.850e-12
Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = 2
Query:  296 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXX-LDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            +KPLGDRV++++   EEKT  GI LP +A+ KPQ                  + + VK G ++I+SKYA TE+++ G  +LILRE D++ +
Sbjct:    2 LKPLGDRVVIELVESEEKTASGIVLPDSAKEKPQEGKIVAAGSGRVLESGERVALEVKEGDRIIFSKYAGTEVKYEGTEYLILRESDILAV 92          
The following BLAST results are available for this feature:
BLAST of CX308516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 131
Match NameE-valueIdentityDescription
CH10_CYAP72.257e-1241.7610 kDa chaperonin OS=Cyanothece sp. (strain PCC 74... [more]
CH10_CYAA52.257e-1239.5610 kDa chaperonin OS=Cyanothece sp. (strain ATCC 5... [more]
CH10_CYAP82.948e-1239.7810 kDa chaperonin OS=Cyanothece sp. (strain PCC 88... [more]
CH10_CLONN2.948e-1240.0010 kDa chaperonin OS=Clostridium novyi (strain NT)... [more]
CH10_CLOBO2.948e-1238.8910 kDa chaperonin OS=Clostridium botulinum GN=groS... [more]
CH10_PELPB3.850e-1239.1310 kDa chaperonin OS=Pelodictyon phaeoclathratifor... [more]
CH10_LEPIN3.850e-1239.5610 kDa chaperonin OS=Leptospira interrogans GN=gro... [more]
CH10_LEPIC3.850e-1239.5610 kDa chaperonin OS=Leptospira interrogans serogr... [more]
CH10_BACTR3.850e-1241.7610 kDa chaperonin OS=Bacillus thermoglucosidasius ... [more]
CH10_BACSU3.850e-1239.5610 kDa chaperonin OS=Bacillus subtilis GN=groS PE=... [more]

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Properties
Property NameValue
Genbank descriptionC20010H01SK OF2 Citrus clementina cDNA clone C20010H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308516 ID=CX308516; Name=CX308516; organism=Citrus clementina; type=EST; length=566bp
ATCTTCTCGACTCTTCTTCAAATTTCAACTAGAAACCTTATCAAACTACT
CGCTCGCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCTCACTCT
GCATCTGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAATTAAG
GTTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAAACCGTCTTCCAG
TCAAGTTCGCTTCCGTCTGAGGTGCTCCCAGCCAACGCTCTTTCCGTCGC
TTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAATTAA
ACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAGAAAA
CTGATGGTGGTATTTTTCTGCCATCTACAGCTCAAACAAAACCTCAAGCA
GGTGAGGTGGTAGCTGTTGGCTAGGGGAAGACAGTTGGGAAGACTAAACT
GGACATATCTGTGAAGCCTGGGACCCAAGTCATCTATTCGAAGTATGCAT
GGACTGAGTTGGAGTTCAATGGCGCACATCATCTCATATTGAGGGAGGAT
GACGTAGTTGGCATTC
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