CX308516

Overview
NameCX308516
Unique NameCX308516
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length566
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11254 contig Ccv1_Contig11254:115..676. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_BACA2 (10 kDa chaperonin OS=Bacillus amyloliquefaciens (strain FZB42) GN=groS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.850e-12
Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = 2
Query:  296 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXX-LDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            +KPLGDRV++++   EEKT  GI LP +A+ KPQ                  + + VK G ++I+SKYA TE+++ G  +LILRE D++ +
Sbjct:    2 LKPLGDRVVIELVESEEKTASGIVLPDSAKEKPQEGKIVAAGSGRVLESGERVALEVKEGDRIIFSKYAGTEVKYEGTEYLILRESDILAV 92          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_TREDE (10 kDa chaperonin OS=Treponema denticola GN=groS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.028e-12
Identity = 39/90 (43.33%), Postives = 51/90 (56.67%), Query Frame = 2
Query:  296 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            +KPLGDRVLVK   VE KT GGI +P TAQ K Q                   I V  G +VI+ KYA T+++ +G  HLIL+ +D+V +
Sbjct:    3 VKPLGDRVLVKPDAVETKTAGGIIIPDTAQEKTQRGVVVAVGDDKE------KIKVSVGQKVIHDKYAGTQIQIDGVDHLILKSNDLVAV 86          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_LEPBL (10 kDa chaperonin OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=groS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.028e-12
Identity = 36/91 (39.56%), Postives = 52/91 (57.14%), Query Frame = 2
Query:  293 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            SIKPLGDRVLV+ +   E+  G IF+P TA+ KPQ                 + + VK G  V+Y KY+ TE++  G  +LI+RE D++ +
Sbjct:    3 SIKPLGDRVLVEPRQEAEEKIGSIFVPDTAKEKPQEGKVVEIGSGKYEDGKLVPLEVKVGDTVLYGKYSGTEIKSEGKEYLIIRESDILAV 93          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_LEPBJ (10 kDa chaperonin OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=groS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.028e-12
Identity = 36/91 (39.56%), Postives = 52/91 (57.14%), Query Frame = 2
Query:  293 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            SIKPLGDRVLV+ +   E+  G IF+P TA+ KPQ                 + + VK G  V+Y KY+ TE++  G  +LI+RE D++ +
Sbjct:    3 SIKPLGDRVLVEPRQEAEEKIGSIFVPDTAKEKPQEGKVVEIGSGKYEDGKLVPLEVKVGDTVLYGKYSGTEIKSEGKEYLIIRESDILAV 93          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_CLOB8 (10 kDa chaperonin OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=groS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.028e-12
Identity = 36/91 (39.56%), Postives = 54/91 (59.34%), Query Frame = 2
Query:  293 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            +IKPLG+RV++K    EEKT  GI L  TA+ +PQ                 + + VK G +V+YSKYA TE++ +G  + IL++DD++ I
Sbjct:    2 NIKPLGERVVIKKLEAEEKTKSGIVLTGTAKERPQEAEVVAVGPGAVVDGNRVAMEVKVGDKVLYSKYAGTEVKVDGEEYTILKQDDILAI 92          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_BACLD (10 kDa chaperonin OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=groS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.028e-12
Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = 2
Query:  296 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQ-XXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            +KPLGDRV++++   EEKT  GI LP +A+ KPQ                  + + VK G ++I+SKYA TE+++ G  +LILRE D++ +
Sbjct:    2 LKPLGDRVVIELVESEEKTASGIVLPDSAKEKPQEGKVVAAGSGRVLESGERVALEVKTGDRIIFSKYAGTEVKYEGTDYLILRESDILAV 92          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_BACCN (10 kDa chaperonin OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=groS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.028e-12
Identity = 36/91 (39.56%), Postives = 54/91 (59.34%), Query Frame = 2
Query:  296 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQ-XXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ                  + + V  G ++I+SKYA TE+++ G  +LILRE D++ +
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDRIIFSKYAGTEVKYEGTDYLILRESDILAV 92          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_ANASP (10 kDa chaperonin OS=Anabaena sp. (strain PCC 7120) GN=groS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.028e-12
Identity = 35/93 (37.63%), Postives = 55/93 (59.14%), Query Frame = 2
Query:  290 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQ-XXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            +++KPLGDRV VK+   EEKT GG++LP TA+ KPQ                   ++ VK G +V+YSKYA T+++     +++L E D++ +
Sbjct:    9 STVKPLGDRVFVKVSASEEKTAGGLYLPDTAKEKPQVGEVVALGAGKRNDDGSRQELEVKVGDKVLYSKYAGTDVKLGTEEYVLLSEKDILAV 101          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_TRIEI (10 kDa chaperonin OS=Trichodesmium erythraeum (strain IMS101) GN=groS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.567e-12
Identity = 36/93 (38.71%), Postives = 55/93 (59.14%), Query Frame = 2
Query:  290 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQ-XXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            +++KPLG+RV VK+   EEKT GGI LP +A+ KPQ                   ++ VK G +V+YSKYA T+++  G  +++L E D++ I
Sbjct:    9 STVKPLGERVFVKVSESEEKTAGGILLPDSAKEKPQVGEVVSAGPGKRNDDGTRAEMEVKVGDKVLYSKYAGTDIKLGGDEYVLLAEKDILAI 101          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_SYNY3 (10 kDa chaperonin OS=Synechocystis sp. (strain PCC 6803) GN=groS PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 6.567e-12
Identity = 36/91 (39.56%), Postives = 52/91 (57.14%), Query Frame = 2
Query:  290 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXXLD-ISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVV 559
            +++KPLGDRV VK+   EEKT GGI LP  A+ KPQ                    + VK G +V+YSKYA T+++  G  +++L E D++
Sbjct:    9 STVKPLGDRVFVKVSPAEEKTAGGILLPDNAKEKPQIGEVVQVGPGKRNDDGTYSPVEVKVGDKVLYSKYAGTDIKLGGDDYVLLTEKDIL 99          
The following BLAST results are available for this feature:
BLAST of CX308516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 131
Match NameE-valueIdentityDescription
CH10_BACA23.850e-1239.5610 kDa chaperonin OS=Bacillus amyloliquefaciens (s... [more]
CH10_TREDE5.028e-1243.3310 kDa chaperonin OS=Treponema denticola GN=groS P... [more]
CH10_LEPBL5.028e-1239.5610 kDa chaperonin OS=Leptospira borgpetersenii ser... [more]
CH10_LEPBJ5.028e-1239.5610 kDa chaperonin OS=Leptospira borgpetersenii ser... [more]
CH10_CLOB85.028e-1239.5610 kDa chaperonin OS=Clostridium beijerinckii (str... [more]
CH10_BACLD5.028e-1239.5610 kDa chaperonin OS=Bacillus licheniformis (strai... [more]
CH10_BACCN5.028e-1239.5610 kDa chaperonin OS=Bacillus cereus subsp. cytoto... [more]
CH10_ANASP5.028e-1237.6310 kDa chaperonin OS=Anabaena sp. (strain PCC 7120... [more]
CH10_TRIEI6.567e-1238.7110 kDa chaperonin OS=Trichodesmium erythraeum (str... [more]
CH10_SYNY36.567e-1239.5610 kDa chaperonin OS=Synechocystis sp. (strain PCC... [more]

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Properties
Property NameValue
Genbank descriptionC20010H01SK OF2 Citrus clementina cDNA clone C20010H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308516 ID=CX308516; Name=CX308516; organism=Citrus clementina; type=EST; length=566bp
ATCTTCTCGACTCTTCTTCAAATTTCAACTAGAAACCTTATCAAACTACT
CGCTCGCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCTCACTCT
GCATCTGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAATTAAG
GTTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAAACCGTCTTCCAG
TCAAGTTCGCTTCCGTCTGAGGTGCTCCCAGCCAACGCTCTTTCCGTCGC
TTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAATTAA
ACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAGAAAA
CTGATGGTGGTATTTTTCTGCCATCTACAGCTCAAACAAAACCTCAAGCA
GGTGAGGTGGTAGCTGTTGGCTAGGGGAAGACAGTTGGGAAGACTAAACT
GGACATATCTGTGAAGCCTGGGACCCAAGTCATCTATTCGAAGTATGCAT
GGACTGAGTTGGAGTTCAATGGCGCACATCATCTCATATTGAGGGAGGAT
GACGTAGTTGGCATTC
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