CX308516

Overview
NameCX308516
Unique NameCX308516
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length566
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11254 contig Ccv1_Contig11254:115..676. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_CHLPD (10 kDa chaperonin OS=Chlorobium phaeobacteroides (strain DSM 266) GN=groS PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.495e-11
Identity = 35/92 (38.04%), Postives = 51/92 (55.43%), Query Frame = 2
Query:  293 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQ-XXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            ++KPL DRV+VK    EEKT GG+ +P T + KPQ                  L++ +K G +V+Y KY+ TE+   G  +LI+RE D+  I
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLIIPDTGKEKPQYGEVVAVGTGKVADSGQLLEMQIKVGQKVLYGKYSGTEVSVEGEDYLIMRESDIFAI 93          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_ANOFW (10 kDa chaperonin OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=groS PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.495e-11
Identity = 35/91 (38.46%), Postives = 54/91 (59.34%), Query Frame = 2
Query:  296 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQ-XXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            +KPLGDR+++++   EEKT  GI LP TA+ KPQ                  +   V  G ++I+SKYA TE++++G  +LILRE D++ +
Sbjct:    2 LKPLGDRIVIELIQTEEKTASGIVLPDTAKEKPQEGKVVAVGSGRVLDNGERVAPEVSVGDRIIFSKYAGTEVKYDGKEYLILRESDILAV 92          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_ALKMQ (10 kDa chaperonin OS=Alkaliphilus metalliredigens (strain QYMF) GN=groS PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.495e-11
Identity = 33/91 (36.26%), Postives = 55/91 (60.44%), Query Frame = 2
Query:  293 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            +IKPLGD+V++K    E+KT  GI LP +A+ +PQ                 + + +K G +VI+SKYA TE++ +G  + ILR++D++ +
Sbjct:    2 NIKPLGDKVVIKKVEAEDKTKSGIVLPGSAKEQPQMAEVVAVGPGGVVEGKEIIMELKVGDKVIFSKYAGTEVKLDGEEYTILRQNDILAV 92          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH101_BRAJA (10 kDa chaperonin 1 OS=Bradyrhizobium japonicum GN=groS1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.495e-11
Identity = 36/90 (40.00%), Postives = 54/90 (60.00%), Query Frame = 2
Query:  299 KPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXXL-DISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            +PL DRVLV+    EEKT GGI +P TA+ KPQ                 L  I VKPG +V++ K++ TE++ +G  +LI++E D++G+
Sbjct:    4 RPLHDRVLVRRIDAEEKTAGGIIIPDTAKEKPQEGEIIAAGSGGRNEQGQLIPIDVKPGDRVLFGKWSGTEVKIDGQDYLIMKESDLLGV 93          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_PROVI (10 kDa chaperonin OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=groS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.259e-11
Identity = 35/92 (38.04%), Postives = 51/92 (55.43%), Query Frame = 2
Query:  293 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQ-XXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            ++KPL DRV+VK    EEKT GG+++P T + KP                   L++ VK G +V+Y KY+ TE+   G  +LI+RE D+  I
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLYIPDTGKEKPMYGEVVAVGAGKMSDSGQLLEMPVKAGDKVLYGKYSGTEVSVEGEDYLIMRESDIFAI 93          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_GEOSF (10 kDa chaperonin OS=Geobacter sp. (strain FRC-32) GN=groS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.259e-11
Identity = 34/91 (37.36%), Postives = 54/91 (59.34%), Query Frame = 2
Query:  296 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQXXXXXXXXXXXXXXXXX-LDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            ++P+ DR++VK    E KT GGI++P TA+ KPQ                  L + VK G +V++ KY+ TE++  G  +LI+REDD++G+
Sbjct:    3 LRPMQDRIIVKRVEEETKTAGGIYIPETAKEKPQEGEVVAVGNGKRTEDGKILPLDVKVGDKVLFGKYSGTEVKVEGQDYLIMREDDILGV 93          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_LACHE (10 kDa chaperonin OS=Lactobacillus helveticus GN=groS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.256e-11
Identity = 35/91 (38.46%), Postives = 53/91 (58.24%), Query Frame = 2
Query:  296 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKP-QXXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            ++P+GDRV+VK+K  EEKT GGI L S A+ KP +                 + +SVK G  V+Y +Y+ T +E+ G  +L+L E D++ I
Sbjct:    2 LQPIGDRVIVKVKDEEEKTVGGIVLASNAKKKPTEGEVVAVGEGAYASNGEKIPMSVKKGDVVLYDRYSGTNVEYEGEKYLVLHEKDILAI 92          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_LACH4 (10 kDa chaperonin OS=Lactobacillus helveticus (strain DPC 4571) GN=groS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.256e-11
Identity = 35/91 (38.46%), Postives = 53/91 (58.24%), Query Frame = 2
Query:  296 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKP-QXXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            ++P+GDRV+VK+K  EEKT GGI L S A+ KP +                 + +SVK G  V+Y +Y+ T +E+ G  +L+L E D++ I
Sbjct:    2 LQPIGDRVIVKVKDEEEKTVGGIVLASNAKKKPTEGEVVAVGEGAYASNGEKIPMSVKKGDVVLYDRYSGTNVEYEGEKYLVLHEKDILAI 92          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_DESOH (10 kDa chaperonin OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=groS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.256e-11
Identity = 35/90 (38.89%), Postives = 52/90 (57.78%), Query Frame = 2
Query:  299 KPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKP-QXXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            +PL DR+LVK    E KT GGI +P TA+ KP +                 + + VK G +V++ KY  TE++ +G  +LI+REDD++GI
Sbjct:    4 RPLHDRILVKRVEEETKTKGGIIIPDTAKEKPIEGKVMAVGNGRLGEDGKLIPLEVKKGDRVLFGKYGGTEVKMDGQEYLIMREDDILGI 93          
BLAST of CX308516 vs. ExPASy Swiss-Prot
Match: CH10_CHLPB (10 kDa chaperonin OS=Chlorobium phaeobacteroides (strain BS1) GN=groS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.256e-11
Identity = 35/92 (38.04%), Postives = 51/92 (55.43%), Query Frame = 2
Query:  293 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQ-XXXXXXXXXXXXXXXXXLDISVKPGTQVIYSKYAWTELEFNGAHHLILREDDVVGI 565
            ++KPL DRV+VK    EEKT GG+++P T + KPQ                  L++ V  G +V+Y KY+ TE+   G  +LI+RE D+  I
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLYIPDTGKEKPQYGEVVAVGAGKVADSGQLLEMQVAVGNKVLYGKYSGTEVAVEGEDYLIMRESDIFAI 93          
The following BLAST results are available for this feature:
BLAST of CX308516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 131
Match NameE-valueIdentityDescription
CH10_CHLPD2.495e-1138.0410 kDa chaperonin OS=Chlorobium phaeobacteroides (... [more]
CH10_ANOFW2.495e-1138.4610 kDa chaperonin OS=Anoxybacillus flavithermus (s... [more]
CH10_ALKMQ2.495e-1136.2610 kDa chaperonin OS=Alkaliphilus metalliredigens ... [more]
CH101_BRAJA2.495e-1140.0010 kDa chaperonin 1 OS=Bradyrhizobium japonicum GN... [more]
CH10_PROVI3.259e-1138.0410 kDa chaperonin OS=Prosthecochloris vibrioformis... [more]
CH10_GEOSF3.259e-1137.3610 kDa chaperonin OS=Geobacter sp. (strain FRC-32)... [more]
CH10_LACHE4.256e-1138.4610 kDa chaperonin OS=Lactobacillus helveticus GN=g... [more]
CH10_LACH44.256e-1138.4610 kDa chaperonin OS=Lactobacillus helveticus (str... [more]
CH10_DESOH4.256e-1138.8910 kDa chaperonin OS=Desulfococcus oleovorans (str... [more]
CH10_CHLPB4.256e-1138.0410 kDa chaperonin OS=Chlorobium phaeobacteroides (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC20010H01SK OF2 Citrus clementina cDNA clone C20010H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308516 ID=CX308516; Name=CX308516; organism=Citrus clementina; type=EST; length=566bp
ATCTTCTCGACTCTTCTTCAAATTTCAACTAGAAACCTTATCAAACTACT
CGCTCGCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCTCACTCT
GCATCTGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAATTAAG
GTTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAAACCGTCTTCCAG
TCAAGTTCGCTTCCGTCTGAGGTGCTCCCAGCCAACGCTCTTTCCGTCGC
TTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAATTAA
ACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAGAAAA
CTGATGGTGGTATTTTTCTGCCATCTACAGCTCAAACAAAACCTCAAGCA
GGTGAGGTGGTAGCTGTTGGCTAGGGGAAGACAGTTGGGAAGACTAAACT
GGACATATCTGTGAAGCCTGGGACCCAAGTCATCTATTCGAAGTATGCAT
GGACTGAGTTGGAGTTCAATGGCGCACATCATCTCATATTGAGGGAGGAT
GACGTAGTTGGCATTC
back to top