CX308518

Overview
NameCX308518
Unique NameCX308518
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length612
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig32 contig Ccv1_Contig32:78..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308518 vs. ExPASy Swiss-Prot
Match: PROF5_HEVBR (Profilin-5 OS=Hevea brasiliensis PE=1 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.213e-59
Identity = 102/131 (77.86%), Postives = 119/131 (90.84%), Query Frame = 3
Query:   54 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 446
            MSWQ YVDDHL+C+I+G+ L+AAAIIGHDGSVWAQS  FPQ K +E+  +M DF+EPG+LAPTGL+LGGTKYMVIQGEPGAVIRGKKG GG+T+KKT  ALIIGIYDEP+TPGQCNMIVERLGDYL++QG+
Sbjct:    1 MSWQTYVDDHLMCDIDGHRLTAAAIIGHDGSVWAQSSGFPQFKSDEVAAVMKDFDEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALIIGIYDEPLTPGQCNMIVERLGDYLLEQGM 131          
BLAST of CX308518 vs. ExPASy Swiss-Prot
Match: PROF4_HEVBR (Profilin-4 OS=Hevea brasiliensis PE=1 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.213e-59
Identity = 103/131 (78.63%), Postives = 120/131 (91.60%), Query Frame = 3
Query:   54 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 446
            MSWQ YVDDHL+C+I+G+ L+AAAIIGHDGSVWAQS +FPQ K +E+  IM DF+EPG+LAPTGL+LG TKYMVIQGEPGAVIRGKKG GG+T+KKTS ALIIGIYDEP+TPGQCNMIVERLGDYL++QG+
Sbjct:    1 MSWQTYVDDHLMCDIDGHRLTAAAIIGHDGSVWAQSSSFPQFKSDEVAAIMKDFDEPGSLAPTGLHLGSTKYMVIQGEPGAVIRGKKGSGGITVKKTSQALIIGIYDEPLTPGQCNMIVERLGDYLLEQGM 131          
BLAST of CX308518 vs. ExPASy Swiss-Prot
Match: PROF_DAUCA (Profilin OS=Daucus carota PE=1 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.891e-59
Identity = 108/134 (80.60%), Postives = 119/134 (88.81%), Query Frame = 3
Query:   54 MSWQAYVDDHLLCEIEGN---HLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 446
            MSWQ YVDDHL+CE++GN    LSAAAIIGHDGSVWAQS  FP+ KPEEITGIM +F+EPG LAPTGLYLGGTKYMVIQGEP AVIRGKKG GGVTIKKT  AL+ G+YDEP+TPGQCN+IVERLGDYLI+QGL
Sbjct:    1 MSWQTYVDDHLMCEVDGNPGQQLSAAAIIGHDGSVWAQSSTFPKFKPEEITGIMKNFDEPGHLAPTGLYLGGTKYMVIQGEPIAVIRGKKGSGGVTIKKTGQALVFGVYDEPVTPGQCNLIVERLGDYLIEQGL 134          
BLAST of CX308518 vs. ExPASy Swiss-Prot
Match: PROF1_HORVU (Profilin-1 OS=Hordeum vulgare GN=PRO1 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.891e-59
Identity = 102/130 (78.46%), Postives = 115/130 (88.46%), Query Frame = 3
Query:   54 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 443
            MSWQ YVDDHL CEI+G HL++AAI+GHDG VW QS NFPQ KPEEI GI+ DF+EPG LAPTGL+LGGTKYMVIQGEPG VIRGKKG GG+TIKKT   LI+GIYDEPMTPGQCN++VERLGDYL++QG
Sbjct:    1 MSWQTYVDDHLCCEIDGQHLTSAAILGHDGRVWVQSPNFPQFKPEEIAGIIKDFDEPGHLAPTGLFLGGTKYMVIQGEPGVVIRGKKGTGGITIKKTGMPLILGIYDEPMTPGQCNLVVERLGDYLVEQG 130          
BLAST of CX308518 vs. ExPASy Swiss-Prot
Match: PROF3_PHLPR (Profilin-3 OS=Phleum pratense GN=PRO3 PE=1 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 6.440e-59
Identity = 100/131 (76.34%), Postives = 118/131 (90.08%), Query Frame = 3
Query:   54 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 446
            MSWQ YVD+HL+CEIEG+HL++AAI GHDG+VWAQS +FPQ KPEEITGIM D +EPG LAPTG+++   KYMVIQGEPGAVIRGKKG GG+TIKKT  AL++GIYDEPMTPGQCNM+VERLGDYL++QG+
Sbjct:    1 MSWQTYVDEHLMCEIEGHHLASAAIFGHDGTVWAQSADFPQFKPEEITGIMKDLDEPGHLAPTGMFVAAAKYMVIQGEPGAVIRGKKGAGGITIKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLVEQGM 131          
BLAST of CX308518 vs. ExPASy Swiss-Prot
Match: PROF_MERAN (Profilin OS=Mercurialis annua PE=1 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 8.410e-59
Identity = 103/133 (77.44%), Postives = 120/133 (90.23%), Query Frame = 3
Query:   54 MSWQAYVDDHLLCEIEGN--HLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 446
            MSWQ YVDDHL+C+I+G   HL+AA+I+GHDGS+WAQS +FPQLKPEEITGIM DF+EPG LAPTGLY+ GTKYMVIQGE GAVIRGKKG GG+TIKKT  AL+ GIY+EP+TPGQCNM+VERLGDYLI+QG+
Sbjct:    1 MSWQTYVDDHLMCDIDGQGQHLAAASIVGHDGSIWAQSASFPQLKPEEITGIMKDFDEPGHLAPTGLYIAGTKYMVIQGESGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLIEQGM 133          
BLAST of CX308518 vs. ExPASy Swiss-Prot
Match: PROF_PRUDU (Profilin OS=Prunus dulcis PE=1 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.435e-58
Identity = 103/131 (78.63%), Postives = 118/131 (90.08%), Query Frame = 3
Query:   54 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 446
            MSWQ YVDDHL+C+I+GN L+AAAI+G DGSVW+QS  FP  KPEEI  I+ DF++PGTLAPTGL+LGGTKYMVIQGE GAVIRGKKG GG+T+KKT+ ALIIGIYDEP+TPGQCNMIVERLGDYLI+QGL
Sbjct:    1 MSWQQYVDDHLMCDIDGNRLTAAAILGQDGSVWSQSATFPAFKPEEIAAILKDFDQPGTLAPTGLFLGGTKYMVIQGEAGAVIRGKKGSGGITVKKTNQALIIGIYDEPLTPGQCNMIVERLGDYLIEQGL 131          
BLAST of CX308518 vs. ExPASy Swiss-Prot
Match: PROF3_LILLO (Profilin-3 OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.435e-58
Identity = 102/130 (78.46%), Postives = 117/130 (90.00%), Query Frame = 3
Query:   54 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 443
            MSWQ YVD+HL+CEI+G HL+AAAIIGH+G +WAQS++FPQ+KPE+   IM DF EPG+LAPTGL+LG  KYMVIQGEPGAVIRGKKG GGVTIKKT+ ALI+GIYDEPMTPGQCNM+VERLGDYL DQG
Sbjct:    1 MSWQTYVDEHLMCEIDGQHLTAAAIIGHEGGIWAQSDSFPQVKPEQTAAIMRDFAEPGSLAPTGLFLGDGKYMVIQGEPGAVIRGKKGSGGVTIKKTNMALIVGIYDEPMTPGQCNMVVERLGDYLYDQG 130          
BLAST of CX308518 vs. ExPASy Swiss-Prot
Match: PROF2_OLEEU (Profilin-2 OS=Olea europaea GN=PRO2 PE=1 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.435e-58
Identity = 105/134 (78.36%), Postives = 119/134 (88.81%), Query Frame = 3
Query:   54 MSWQAYVDDHLLCEIEGNH---LSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 446
            MSWQAYVDDHL+C+IEG+    L+AAAI+GHDGSVWAQS  FPQ KPEE+ GIM DFNEPG LAPTGL+LGGTKYMVIQGE GAVIRGKKG GG+TIKKT  AL+ GIY+EP+TPGQCNM+VERLGDYL++QGL
Sbjct:    1 MSWQAYVDDHLMCDIEGHEGHRLTAAAIVGHDGSVWAQSATFPQFKPEEMNGIMTDFNEPGHLAPTGLHLGGTKYMVIQGEAGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLLEQGL 134          
BLAST of CX308518 vs. ExPASy Swiss-Prot
Match: PROF1_MAIZE (Profilin-1 OS=Zea mays GN=PRO1 PE=1 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.435e-58
Identity = 100/131 (76.34%), Postives = 118/131 (90.08%), Query Frame = 3
Query:   54 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 446
            MSWQ YVD+HL+CEIEG+HL++AAI+GHDG+ WAQS  FP+ KPEE+  IM DF+EPG LAPTGL LGGTKYMVIQGEPGAVIRGKKG GG+T+KKT  +LIIGIYDEPMTPGQCN++VERLGDYL++QG+
Sbjct:    1 MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGATWAQSTAFPEFKPEEMAAIMKDFDEPGHLAPTGLILGGTKYMVIQGEPGAVIRGKKGSGGITVKKTGQSLIIGIYDEPMTPGQCNLVVERLGDYLLEQGM 131          
The following BLAST results are available for this feature:
BLAST of CX308518 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
PROF5_HEVBR2.213e-5977.86Profilin-5 OS=Hevea brasiliensis PE=1 SV=1[more]
PROF4_HEVBR2.213e-5978.63Profilin-4 OS=Hevea brasiliensis PE=1 SV=1[more]
PROF_DAUCA2.891e-5980.60Profilin OS=Daucus carota PE=1 SV=1[more]
PROF1_HORVU2.891e-5978.46Profilin-1 OS=Hordeum vulgare GN=PRO1 PE=2 SV=1[more]
PROF3_PHLPR6.440e-5976.34Profilin-3 OS=Phleum pratense GN=PRO3 PE=1 SV=1[more]
PROF_MERAN8.410e-5977.44Profilin OS=Mercurialis annua PE=1 SV=1[more]
PROF_PRUDU1.435e-5878.63Profilin OS=Prunus dulcis PE=1 SV=1[more]
PROF3_LILLO1.435e-5878.46Profilin-3 OS=Lilium longiflorum PE=2 SV=1[more]
PROF2_OLEEU1.435e-5878.36Profilin-2 OS=Olea europaea GN=PRO2 PE=1 SV=1[more]
PROF1_MAIZE1.435e-5876.34Profilin-1 OS=Zea mays GN=PRO1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC20010H03SK OF2 Citrus clementina cDNA clone C20010H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308518 ID=CX308518; Name=CX308518; organism=Citrus clementina; type=EST; length=612bp
AAAATAAAAAAAAATTCACAGAGAAATCAGAGGAATCTTCAAAGCAGAAA
AAGATGTCGTGGCAAGCTTACGTCGATGATCATCTGTTGTGTGAAATTGA
GGGTAACCATCTCTCAGCTGCCGCTATCATCGGCCACGACGGCAGCGTTT
GGGCCCAGAGTGAAAACTTCCCTCAGTTAAAACCTGAGGAAATAACTGGT
ATCATGAATGACTTTAATGAACCTGGAACACTAGCACCAACTGGACTGTA
TCTTGGTGGCACAAAATATATGGTGATCCAGGGTGAGCCAGGTGCTGTCA
TCCGAGGGAAGAAGGGCCCTGGTGGTGTTACCATCAAGAAGACCAGTGCG
GCCTTAATCATTGGAATCTATGATGAGCCGATGACCCCTGGGCAGTGCAA
CATGATTGTTGAAAGGCTTGGTGATTATCTCATTGATCAGGGTCTTTAGG
TGGTTTGCATGTCCGCTAATTTGTTTCATTTCTTGGCTTCCCTAAAAAGC
TCGCACTGTTGAACTTCGGTGTAATAATATTACAGTATTCAAAGTTATGG
GAACTGTGTGTGGAAAGGAAAGGTTTGGTGCATGTGGAAGTTCTTGATAT
CATCTATTTGTA
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