CX308518

Overview
NameCX308518
Unique NameCX308518
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length612
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig32 contig Ccv1_Contig32:78..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308518 vs. ExPASy Swiss-Prot
Match: PROF1_CITSI (Profilin OS=Citrus sinensis PE=1 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 6.027e-57
Identity = 101/131 (77.10%), Postives = 117/131 (89.31%), Query Frame = 3
Query:   54 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 446
            MSWQAYVDDHL+C+I+GN L+AAAI+G DGSVW+QS  FP  + EEI  I+ DF++PGTLAPTGL+LGGTKYMVIQGE GAVIRGKKG GG+ +KKT+ ALIIGIYDEP+TPGQCNMIVERLGDYLI+QGL
Sbjct:    1 MSWQAYVDDHLMCDIDGNRLTAAAILGQDGSVWSQSATFPAFRLEEIAAILKDFDQPGTLAPTGLFLGGTKYMVIQGEAGAVIRGKKGSGGIIVKKTNQALIIGIYDEPLTPGQCNMIVERLGDYLIEQGL 131          
BLAST of CX308518 vs. ExPASy Swiss-Prot
Match: PROF2_ARATH (Profilin-2 OS=Arabidopsis thaliana GN=PRO2 PE=1 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 7.872e-57
Identity = 102/131 (77.86%), Postives = 113/131 (86.26%), Query Frame = 3
Query:   54 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 446
            MSWQ+YVDDHL+CE+EGNHL+ AAI G DGSVWAQS  FPQLKP EI GI  DF E G LAPTGL+LGG KYMV+QGE GAVIRGKKGPGGVTIKKT+ AL+ GIYDEPMT GQCN++VERLGDYLI+ GL
Sbjct:    1 MSWQSYVDDHLMCEVEGNHLTHAAIFGQDGSVWAQSSAFPQLKPAEIAGINKDFEEAGHLAPTGLFLGGEKYMVVQGEAGAVIRGKKGPGGVTIKKTTQALVFGIYDEPMTGGQCNLVVERLGDYLIESGL 131          
BLAST of CX308518 vs. ExPASy Swiss-Prot
Match: PROF4_ARATH (Profilin-4 OS=Arabidopsis thaliana GN=PRO4 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.028e-56
Identity = 99/134 (73.88%), Postives = 119/134 (88.81%), Query Frame = 3
Query:   54 MSWQAYVDDHLLCEI---EGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 446
            MSWQAYVD+HL+C++   +G+HL+AAAIIGHDGSVWAQS NFPQ KP+EIT IM DF+EPG LAPTG++L G KYMVIQGEP AVIRGKKG GG+TIKKT  +++ G+Y+EP+TPGQCNM+VERLGDYLI+QGL
Sbjct:    1 MSWQAYVDEHLMCDVGDGQGHHLTAAAIIGHDGSVWAQSANFPQFKPQEITDIMKDFDEPGHLAPTGMFLAGLKYMVIQGEPNAVIRGKKGAGGITIKKTGQSMVFGLYEEPVTPGQCNMVVERLGDYLIEQGL 134          
BLAST of CX308518 vs. ExPASy Swiss-Prot
Match: PROF1_TOBAC (Profilin-1 OS=Nicotiana tabacum GN=PRO1 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.754e-56
Identity = 101/133 (75.94%), Postives = 117/133 (87.97%), Query Frame = 3
Query:   54 MSWQAYVDDHLLCEIEG---NHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 443
            MSWQ YVDDHL+ +IEG   +HL+AAAI+GHDGSVWAQS  FP+ KPEEIT IM DF+EPG LAPTGL+LGG KYMVIQGEPGAVIRGKKG GG+TIKKT+ ALI GIY+EP+TPGQCNM+VE++ DYL+DQG
Sbjct:    1 MSWQTYVDDHLMADIEGQQGHHLAAAAILGHDGSVWAQSSTFPKFKPEEITNIMKDFDEPGHLAPTGLFLGGAKYMVIQGEPGAVIRGKKGSGGITIKKTNQALIFGIYEEPVTPGQCNMVVEKIRDYLVDQG 133          
BLAST of CX308518 vs. ExPASy Swiss-Prot
Match: PROF_BETVE (Profilin OS=Betula verrucosa GN=BETVII PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 2.991e-56
Identity = 101/133 (75.94%), Postives = 117/133 (87.97%), Query Frame = 3
Query:   54 MSWQAYVDDHLLCEIEG--NHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 446
            MSWQ YVD+HL+C+I+G  ++  A+AI+GHDGSVWAQS +FPQ KP+EITGIM DF EPG LAPTGL+LGG KYMVIQGE GAVIRGKKG GG+TIKKT  AL+ GIY+EP+TPGQCNM+VERLGDYLIDQGL
Sbjct:    1 MSWQTYVDEHLMCDIDGQASNSLASAIVGHDGSVWAQSSSFPQFKPQEITGIMKDFEEPGHLAPTGLHLGGIKYMVIQGEAGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLIDQGL 133          
BLAST of CX308518 vs. ExPASy Swiss-Prot
Match: PROF3_TOBAC (Profilin-3 OS=Nicotiana tabacum GN=PRO3 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 8.703e-56
Identity = 99/132 (75.00%), Postives = 116/132 (87.88%), Query Frame = 3
Query:   54 MSWQAYVDDHLLCEIEGN--HLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 443
            MSWQ YVDDHL+ + EG   HL+AAAI+GHDGSVWAQS +FP+ KPEEIT IM DF+EPG LAPTGL+L G KYMVIQGEPGAVIRGKKG GG+TIKKT+ ALI G+Y+EP+TPGQCNM+VE++GDYL+DQG
Sbjct:    1 MSWQTYVDDHLMVDFEGQGQHLAAAAILGHDGSVWAQSPHFPKFKPEEITNIMKDFDEPGFLAPTGLFLAGIKYMVIQGEPGAVIRGKKGSGGITIKKTNQALIFGLYEEPVTPGQCNMVVEKIGDYLVDQG 132          
BLAST of CX308518 vs. ExPASy Swiss-Prot
Match: PROF3_AMBAR (Profilin-3 OS=Ambrosia artemisiifolia GN=D03 PE=1 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 5.641e-55
Identity = 95/133 (71.43%), Postives = 118/133 (88.72%), Query Frame = 3
Query:   54 MSWQAYVDDHLLCEIEG--NHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 446
            MSWQAYVD+HL+C+IEG  +HL++AAI+GHDG+VWAQS NFPQ KPEE+ GI+ +F++ GTLAPTG+++ G KYMV+QGE GAVIRGKKG GG+ IKKT  AL++GIYDEP+ PGQCNM+VERLGDYLIDQG+
Sbjct:    1 MSWQAYVDEHLMCDIEGTGHHLTSAAILGHDGTVWAQSSNFPQFKPEEMKGIITEFDQAGTLAPTGMFIAGAKYMVLQGEQGAVIRGKKGAGGICIKKTGQALVMGIYDEPVAPGQCNMVVERLGDYLIDQGM 133          
BLAST of CX308518 vs. ExPASy Swiss-Prot
Match: PROF3_ARATH (Profilin-3 OS=Arabidopsis thaliana GN=PRO3 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.257e-54
Identity = 95/134 (70.90%), Postives = 116/134 (86.57%), Query Frame = 3
Query:   54 MSWQAYVDDHLLCEI---EGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 446
            MSWQ YVD+HL+C++   +G+HL+AAAI+GHDGSVWAQS NFPQ K +E + IM DF+EPG LAPTGL++ G KYMVIQGEPGAVIRGKKG GG+TIKKT  + + GIY+EP+TPGQCNM+VERLGDYL++QGL
Sbjct:    1 MSWQTYVDEHLMCDVGDGQGHHLTAAAIVGHDGSVWAQSANFPQFKGQEFSDIMKDFDEPGHLAPTGLFMAGAKYMVIQGEPGAVIRGKKGAGGITIKKTGQSCVFGIYEEPVTPGQCNMVVERLGDYLLEQGL 134          
BLAST of CX308518 vs. ExPASy Swiss-Prot
Match: PROF2_ARTVU (Profilin-2 OS=Artemisia vulgaris PE=1 SV=3)

HSP 1 Score: 211.846 bits (538), Expect = 2.144e-54
Identity = 96/133 (72.18%), Postives = 116/133 (87.22%), Query Frame = 3
Query:   54 MSWQAYVDDHLLCEIEGN--HLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 446
            MSWQ YVDDHL+C+IEG   HL+AAAI+G DG+VWA+S+ FP+ KPEE+ GI+N+FNE GTLAPTGL+LGG KYMV+QGE GAVIRGKKG GG+ IKKT  A+++GIYDEP+ PGQCNMIVERLGDYL+DQ +
Sbjct:    1 MSWQTYVDDHLMCDIEGTGQHLTAAAILGLDGTVWAKSDKFPEFKPEEMKGIINEFNEVGTLAPTGLFLGGAKYMVLQGEAGAVIRGKKGAGGICIKKTGQAMVMGIYDEPVAPGQCNMIVERLGDYLVDQNM 133          
BLAST of CX308518 vs. ExPASy Swiss-Prot
Match: PROF_BRANA (Profilin OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 6.237e-54
Identity = 96/134 (71.64%), Postives = 113/134 (84.33%), Query Frame = 3
Query:   54 MSWQAYVDDHLLCEI---EGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 446
            MSWQ YVD+HL+C++   +G+HL+AAAI GHDGSVWAQS NFPQ K +E   IM DF+EPG LAPTGL+L G KYMVIQGEPGAVIRGKKG GG+TIKKT  + + GIY+EP+TPGQCNM+VERLGDYLI+Q L
Sbjct:    1 MSWQTYVDEHLMCDVGDGQGHHLAAAAIFGHDGSVWAQSANFPQFKGQEFANIMKDFDEPGHLAPTGLFLAGAKYMVIQGEPGAVIRGKKGAGGITIKKTGQSCVFGIYEEPVTPGQCNMVVERLGDYLIEQDL 134          
The following BLAST results are available for this feature:
BLAST of CX308518 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
PROF1_CITSI6.027e-5777.10Profilin OS=Citrus sinensis PE=1 SV=2[more]
PROF2_ARATH7.872e-5777.86Profilin-2 OS=Arabidopsis thaliana GN=PRO2 PE=1 SV... [more]
PROF4_ARATH1.028e-5673.88Profilin-4 OS=Arabidopsis thaliana GN=PRO4 PE=2 SV... [more]
PROF1_TOBAC1.754e-5675.94Profilin-1 OS=Nicotiana tabacum GN=PRO1 PE=2 SV=1[more]
PROF_BETVE2.991e-5675.94Profilin OS=Betula verrucosa GN=BETVII PE=1 SV=1[more]
PROF3_TOBAC8.703e-5675.00Profilin-3 OS=Nicotiana tabacum GN=PRO3 PE=2 SV=1[more]
PROF3_AMBAR5.641e-5571.43Profilin-3 OS=Ambrosia artemisiifolia GN=D03 PE=1 ... [more]
PROF3_ARATH1.257e-5470.90Profilin-3 OS=Arabidopsis thaliana GN=PRO3 PE=2 SV... [more]
PROF2_ARTVU2.144e-5472.18Profilin-2 OS=Artemisia vulgaris PE=1 SV=3[more]
PROF_BRANA6.237e-5471.64Profilin OS=Brassica napus PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC20010H03SK OF2 Citrus clementina cDNA clone C20010H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308518 ID=CX308518; Name=CX308518; organism=Citrus clementina; type=EST; length=612bp
AAAATAAAAAAAAATTCACAGAGAAATCAGAGGAATCTTCAAAGCAGAAA
AAGATGTCGTGGCAAGCTTACGTCGATGATCATCTGTTGTGTGAAATTGA
GGGTAACCATCTCTCAGCTGCCGCTATCATCGGCCACGACGGCAGCGTTT
GGGCCCAGAGTGAAAACTTCCCTCAGTTAAAACCTGAGGAAATAACTGGT
ATCATGAATGACTTTAATGAACCTGGAACACTAGCACCAACTGGACTGTA
TCTTGGTGGCACAAAATATATGGTGATCCAGGGTGAGCCAGGTGCTGTCA
TCCGAGGGAAGAAGGGCCCTGGTGGTGTTACCATCAAGAAGACCAGTGCG
GCCTTAATCATTGGAATCTATGATGAGCCGATGACCCCTGGGCAGTGCAA
CATGATTGTTGAAAGGCTTGGTGATTATCTCATTGATCAGGGTCTTTAGG
TGGTTTGCATGTCCGCTAATTTGTTTCATTTCTTGGCTTCCCTAAAAAGC
TCGCACTGTTGAACTTCGGTGTAATAATATTACAGTATTCAAAGTTATGG
GAACTGTGTGTGGAAAGGAAAGGTTTGGTGCATGTGGAAGTTCTTGATAT
CATCTATTTGTA
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