CX308557

Overview
NameCX308557
Unique NameCX308557
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length461
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig747 contig Ccv1_Contig747:21..481. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308557 vs. ExPASy Swiss-Prot
Match: ZIP7_ARATH (Zinc transporter 7 OS=Arabidopsis thaliana GN=ZIP7 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 3.771e-31
Identity = 68/132 (51.52%), Postives = 88/132 (66.67%), Query Frame = 2
Query:    2 SESPKTIKPLVAALTFHQFFEGMGLGGCITQAKFKSRGVAILALFFSLTTPXXXXXXXXXSSFYDENDPTALIVEGIFNAAAAGILIYMSLVDLLAADFMNPKMQDNKRLQFGAHVSLLLGAGCMSLLAKWA 397
            S++  T++ L+AAL FHQ FEGMGLGG I QA+FKS+    +  FFS+TTP            YDE  PTALIV G+ NA +AG+LIYM+LV+LLA +F  PK+Q N +L    +V+   GA  MSL+AKWA
Sbjct:  234 SDNKCTVQSLIAALCFHQLFEGMGLGGSILQAQFKSKTNWTMVFFFSVTTPFGIVLGMAIQKIYDETSPTALIVVGVLNACSAGLLIYMALVNLLAHEFFGPKIQGNIKLHVLGYVATFTGAAGMSLMAKWA 365          
BLAST of CX308557 vs. ExPASy Swiss-Prot
Match: ZIP6_ARATH (Zinc transporter 6, chloroplastic OS=Arabidopsis thaliana GN=ZIP6 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 6.657e-28
Identity = 66/139 (47.48%), Postives = 93/139 (66.91%), Query Frame = 2
Query:    2 SESPKTIKPLVAALTFHQFFEGMGLGGCITQAKFKSRGVAILALFFSLTTP--XXXXXXXXXSSFYDENDPTALIVEGIFNAAAAGILIYMSLVDLLAADFMNPKM-----QDNKRLQFGAHVSLLLGAGCMSLLAKWA 397
            S++  TI+PL+AAL+FHQ FEG+GLGGCI QA FK+  V  + L F++TTP           ++ YD+ +P ALI+EG+  + ++GILIYM+LVDL+A DF + KM     +   RL+    V+L+LG+  MSLLA WA
Sbjct:  203 SQNKCTIRPLIAALSFHQIFEGLGLGGCIAQAGFKAGTVVYMCLMFAVTTPLGIVLGMVIFAATGYDDQNPNALIMEGLLGSFSSGILIYMALVDLIALDFFHNKMLTTCGESGSRLKKLCFVALVLGSASMSLLALWA 341          
BLAST of CX308557 vs. ExPASy Swiss-Prot
Match: IRT2_ARATH (Fe(2+) transport protein 2 OS=Arabidopsis thaliana GN=IRT2 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.483e-27
Identity = 63/127 (49.61%), Postives = 81/127 (63.78%), Query Frame = 2
Query:   17 TIKPLVAALTFHQFFEGMGLGGCITQAKFKSRGVAILALFFSLTTPXXXXXXXXXSSFYDENDPTALIVEGIFNAAAAGILIYMSLVDLLAADFMNPKMQDNKRLQFGAHVSLLLGAGCMSLLAKWA 397
            TIK L+ AL FH  FEG+GLGGCI QA F +    ++A FF+ TTP         SS Y +N PTALI  G+ NA +AG+LIYM+LVDLLA +FM   +Q + +LQ     + LLG   MS++A WA
Sbjct:  224 TIKGLIIALCFHHLFEGIGLGGCILQADFTNVKKFLMAFFFTGTTPCGIFLGIALSSIYRDNSPTALITIGLLNACSAGMLIYMALVDLLATEFMGSMLQGSIKLQIKCFTAALLGCAVMSVVAVWA 350          
BLAST of CX308557 vs. ExPASy Swiss-Prot
Match: ZRT1_YEAST (Zinc-regulated transporter 1 OS=Saccharomyces cerevisiae GN=ZRT1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 6.463e-15
Identity = 49/128 (38.28%), Postives = 71/128 (55.47%), Query Frame = 2
Query:   29 LVAALTFHQFFEGMGLGGCITQAKF---KSRGVAILALFFSLTTPXXXXXXXXXSSFYDENDPTALIVEGIFNAAAAGILIYMSLVDLLAADFM-NP-KMQDNKRLQFGAHVSLLLGAGCMSLLAKWA 397
            L   L FHQ FEG+G+G  ++  +F   K      L + + LTTP          + Y     TAL++ G+ +A +AGIL+Y  LV+LLA DF+ NP + +D + L F   +  L GAG M+L+ KWA
Sbjct:  250 LYPVLVFHQSFEGLGIGARLSAIEFPRSKRWWPWALCVAYGLTTPICVAIGLGVRTRYVSGSYTALVISGVLDAISAGILLYTGLVELLARDFIFNPQRTKDLRELSFNV-ICTLFGAGIMALIGKWA 376          
BLAST of CX308557 vs. ExPASy Swiss-Prot
Match: ZRT2_YEAST (Zinc-regulated transporter 2 OS=Saccharomyces cerevisiae GN=ZRT2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.049e-13
Identity = 45/138 (32.61%), Postives = 71/138 (51.45%), Query Frame = 2
Query:    2 SESPKTIKPLVAALTFHQFFEGMGLGGCITQAKF---KSRGVAILALFFSLTTPXXXXXXXXXSSFYDENDPTALIVEGIFNAAAAGILIYMSLVDLLAADFMNP---KMQDNKRLQFGAHVSLLLGAGCMSLLAKWA 397
            S + +  + L   LTFHQ FEG+GLG  + +  +   K     ++ L F+LT+P            +      ALI  G+F++ ++GILIY  LV+L+A +F+     K  D  +    A++ +  GA  M+LL KWA
Sbjct:  285 SVAGEEFETLFIVLTFHQMFEGLGLGTRVAETNWPESKKYMPWLMGLAFTLTSPIAVAVGIGVRHSWIPGSRRALIANGVFDSISSGILIYTGLVELMAHEFLYSNQFKGPDGLKKMLSAYLIMCCGAALMALLGKWA 422          
The following BLAST results are available for this feature:
BLAST of CX308557 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
ZIP7_ARATH3.771e-3151.52Zinc transporter 7 OS=Arabidopsis thaliana GN=ZIP7... [more]
ZIP6_ARATH6.657e-2847.48Zinc transporter 6, chloroplastic OS=Arabidopsis t... [more]
IRT2_ARATH1.483e-2749.61Fe(2+) transport protein 2 OS=Arabidopsis thaliana... [more]
ZRT1_YEAST6.463e-1538.28Zinc-regulated transporter 1 OS=Saccharomyces cere... [more]
ZRT2_YEAST6.049e-1332.61Zinc-regulated transporter 2 OS=Saccharomyces cere... [more]

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Properties
Property NameValue
Genbank descriptionC21001C08Rv AbsLeaSub1 Citrus clementina cDNA clone C21001C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308557 ID=CX308557; Name=CX308557; organism=Citrus clementina; type=EST; length=461bp
TTCTGAGAGTCCAAAAACTATTAAGCCTTTGGTTGCAGCGTTGACTTTTC
ATCAATTCTTTGAAGGAATGGGTCTTGGTGGTTGCATTACGCAGGCAAAA
TTCAAGTCTCGAGGAGTCGCAATATTGGCCTTGTTCTTCTCTTTGACAAC
CCCAGCTGGGATAGCAATAGGCATTGGAATATCAAGTTTTTATGACGAAA
ATGACCCCACTGCTCTTATTGTTGAAGGGATATTCAACGCAGCAGCAGCT
GGAATCCTAATATACATGTCCTTGGTTGATCTTCTTGCTGCAGATTTTAT
GAATCCGAAGATGCAAGACAATAAAAGGCTTCAATTTGGAGCACATGTTT
CTCTTCTTTTAGGAGCTGGTTGCATGTCCTTGTTAGCCAAATGGGCTTAA
AAATCATAGAGATTTTTTCGGCAATTTTTGTTTATCCAATAGTTTAATTT
GCGGCAGTTTT
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