CX308567

Overview
NameCX308567
Unique NameCX308567
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length446
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig735 contig Ccv1_Contig735:257..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308567 vs. ExPASy Swiss-Prot
Match: HBL_HORVU (Non-symbiotic hemoglobin OS=Hordeum vulgare GN=HB PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.446e-45
Identity = 86/120 (71.67%), Postives = 107/120 (89.17%), Query Frame = -3
Query:    1 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLEPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 360
            F+EE+EALV+KSW +MKK++  LGL+FFL+IFEIAPSA+++F FLRDS+VPLE N KL+ HA+SVFVMTCE+A QLRKAGK+TVRE+TLK+LG  H KYGV + HFEVT+F+LLETIKEA
Sbjct:   10 FSEEKEALVLKSWAIMKKDSANLGLRFFLKIFEIAPSARQMFPFLRDSDVPLETNPKLKTHAVSVFVMTCEAAAQLRKAGKITVRETTLKRLGGTHLKYGVADGHFEVTRFALLETIKEA 129          
BLAST of CX308567 vs. ExPASy Swiss-Prot
Match: HBL1_ORYSJ (Non-symbiotic hemoglobin 1 OS=Oryza sativa subsp. japonica GN=HB1 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 2.727e-44
Identity = 83/120 (69.17%), Postives = 107/120 (89.17%), Query Frame = -3
Query:    4 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLEPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 363
            +F+EEQEALV+KSW ++KK++  + L+FFL+IFE+APSA ++FSFLR+S+VPLE+N KL+ HAMSVFVMTCE+A QLRKAGKVTVR++TLK+LGA H KYGV + HFEV KF+LL+TIKE
Sbjct:   13 SFSEEQEALVLKSWAILKKDSANIALRFFLKIFEVAPSASQMFSFLRNSDVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRDTTLKRLGATHLKYGVGDAHFEVVKFALLDTIKE 132          
BLAST of CX308567 vs. ExPASy Swiss-Prot
Match: HBL3_ORYSJ (Non-symbiotic hemoglobin 3 OS=Oryza sativa subsp. japonica GN=HB3 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 3.015e-43
Identity = 82/120 (68.33%), Postives = 106/120 (88.33%), Query Frame = -3
Query:    1 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLEPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 360
            FTEEQEALV+KSW +MK ++  +G +FFL+IFE+APSA++LFSFLR+S+VPLE+N KL+ HAM+VFVMTCE+A QLRK G+VTVR++T+K+LG+ HFK GV + HFEV KF+LLETIKEA
Sbjct:   16 FTEEQEALVLKSWAIMKNDSAHIGHRFFLKIFEVAPSARQLFSFLRNSDVPLEKNPKLKIHAMAVFVMTCEAAAQLRKTGRVTVRDTTIKRLGSTHFKNGVSDAHFEVAKFALLETIKEA 135          
BLAST of CX308567 vs. ExPASy Swiss-Prot
Match: HBL4_ORYSJ (Non-symbiotic hemoglobin 4 OS=Oryza sativa subsp. japonica GN=HB4 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 2.161e-41
Identity = 78/119 (65.55%), Postives = 103/119 (86.55%), Query Frame = -3
Query:    4 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLEPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 360
            FTEEQEALV+KSW +MK ++  +G +FFL+IFE+APSA+ LFSFLR+S+VPLE+N  L+ HAM+VFVMTCE+A QLRK G+VTVR++T+K+LG+ HFK GV + HFEV +F+LLETIK+
Sbjct:   13 FTEEQEALVLKSWAIMKDDSANIGHRFFLKIFEVAPSARHLFSFLRNSDVPLEKNPNLKKHAMAVFVMTCEAAAQLRKTGRVTVRDTTIKRLGSTHFKNGVSDTHFEVARFALLETIKD 131          
BLAST of CX308567 vs. ExPASy Swiss-Prot
Match: HBL2_ARATH (Non-symbiotic hemoglobin 2 OS=Arabidopsis thaliana GN=AHB2 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.647e-31
Identity = 65/119 (54.62%), Postives = 90/119 (75.63%), Query Frame = -3
Query:    4 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLEPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 360
            FTE+QEALV +SW ++K++  +  L FF +I EIAP+A+ LFSFLRDS+     N KL+ HA+ VF MTCE+A+QLR+ GKV V ++TL+ LG++H K GV++ HFEV K +LL T+KE
Sbjct:    6 FTEKQEALVKESWEILKQDIPKYSLHFFSQILEIAPAAKGLFSFLRDSDEVPHNNPKLKAHAVKVFKMTCETAIQLREEGKVVVADTTLQYLGSIHLKSGVIDPHFEVVKEALLRTLKE 124          
BLAST of CX308567 vs. ExPASy Swiss-Prot
Match: HBL2_BRANA (Non-symbiotic hemoglobin 2 OS=Brassica napus GN=HB2 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 4.515e-31
Identity = 64/119 (53.78%), Postives = 91/119 (76.47%), Query Frame = -3
Query:    4 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLEPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 360
            FTE+QEALV +SW ++K++  +  L FF +I EIAP+A+ +FSFLRD++     N KL+ HA+ VF MTCE+A+QLR+ GKV V ++TL+ LG+VHFK GV++ HFEV K +L+ T+KE
Sbjct:    6 FTEKQEALVKESWEILKQDIPKYSLHFFSQILEIAPAAKDMFSFLRDTDEVPHNNPKLKAHAVKVFKMTCETAIQLREKGKVVVADTTLQYLGSVHFKSGVLDPHFEVVKEALVRTLKE 124          
BLAST of CX308567 vs. ExPASy Swiss-Prot
Match: HBL2_SOLLC (Non-symbiotic hemoglobin 2 OS=Solanum lycopersicum GN=HB2 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.927e-30
Identity = 66/120 (55.00%), Postives = 87/120 (72.50%), Query Frame = -3
Query:    1 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLEPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 360
            FT++QEALV  SW  MK++  +L L+FF  I EIAP A+ +FSFL+DS+   E N KL  HA+ VF MTCESA+QLR+ G+V V E+TLK LG++H +  V + HFEV K +LL T+KEA
Sbjct:    3 FTDKQEALVRDSWEFMKQDIPQLSLRFFSLILEIAPVAKNMFSFLKDSDELPENNPKLRAHAVKVFKMTCESAIQLREKGEVVVGETTLKYLGSIHLQKRVADPHFEVVKEALLRTVKEA 122          
BLAST of CX308567 vs. ExPASy Swiss-Prot
Match: HBL2_GOSHI (Non-symbiotic hemoglobin 2 OS=Gossypium hirsutum GN=HB2 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.992e-30
Identity = 66/120 (55.00%), Postives = 86/120 (71.67%), Query Frame = -3
Query:    1 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLEPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 360
            FTE+QE LV +SW V+K++     L+FF  I EIAP A+ +FSFLR+S    + N KL+ HA+ VF MTCESA+QLR+ G+V V ++TLK LG VH K GV + HFEV K +LL TI+EA
Sbjct:    3 FTEKQEGLVKESWEVLKQDIPHSSLRFFSLILEIAPGAKNMFSFLRESEEIPQNNPKLKAHAVKVFKMTCESAIQLREKGEVVVADTTLKYLGTVHVKSGVKDPHFEVVKEALLRTIEEA 122          
BLAST of CX308567 vs. ExPASy Swiss-Prot
Match: HBL0_PHYPA (Non-symbiotic hemoglobin 0 OS=Physcomitrella patens GN=GLB0 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.273e-25
Identity = 54/120 (45.00%), Postives = 83/120 (69.17%), Query Frame = -3
Query:    7 RAFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLEPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIK 366
            + +++E E LV +SW ++KK+A   G+ FF ++FEIAP A+ ++SFLRDS +P E+N K++ HA  VF+MT ++AVQL + G   V ES L+KL A H   GV ++ FE+ K ++L  I+
Sbjct:   22 KTYSKENEQLVKQSWEILKKDAQRNGINFFRKVFEIAPGAKAMYSFLRDSTIPFEENPKVKNHARYVFMMTGDAAVQLGEKGAYQVLESKLQKLAATHVNAGVTDDQFEIVKEAILYAIE 141          
BLAST of CX308567 vs. ExPASy Swiss-Prot
Match: HBPA_CASGL (Hemoglobin A OS=Casuarina glauca GN=SYMA PE=2 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 6.315e-25
Identity = 58/121 (47.93%), Postives = 79/121 (65.29%), Query Frame = -3
Query:    1 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLEPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 363
            A TE QEAL+ +SW V+K+N     L+ F  I E AP ++ +FSFL+DSN   E N KL+ HA  +F   CESA +LR+ G+     +TLK+LG++H K  + + HFEV K +LL TIKEA
Sbjct:    2 ALTERQEALLKQSWEVLKQNIPGHSLRLFALIIEAAPESKYVFSFLKDSNEIPENNPKLKAHAAVIFKTICESATELRQKGQAVWDNNTLKRLGSIHLKNKITDPHFEVMKGALLGTIKEA 122          
The following BLAST results are available for this feature:
BLAST of CX308567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
HBL_HORVU1.446e-4571.67Non-symbiotic hemoglobin OS=Hordeum vulgare GN=HB ... [more]
HBL1_ORYSJ2.727e-4469.17Non-symbiotic hemoglobin 1 OS=Oryza sativa subsp. ... [more]
HBL3_ORYSJ3.015e-4368.33Non-symbiotic hemoglobin 3 OS=Oryza sativa subsp. ... [more]
HBL4_ORYSJ2.161e-4165.55Non-symbiotic hemoglobin 4 OS=Oryza sativa subsp. ... [more]
HBL2_ARATH2.647e-3154.62Non-symbiotic hemoglobin 2 OS=Arabidopsis thaliana... [more]
HBL2_BRANA4.515e-3153.78Non-symbiotic hemoglobin 2 OS=Brassica napus GN=HB... [more]
HBL2_SOLLC2.927e-3055.00Non-symbiotic hemoglobin 2 OS=Solanum lycopersicum... [more]
HBL2_GOSHI4.992e-3055.00Non-symbiotic hemoglobin 2 OS=Gossypium hirsutum G... [more]
HBL0_PHYPA1.273e-2545.00Non-symbiotic hemoglobin 0 OS=Physcomitrella paten... [more]
HBPA_CASGL6.315e-2547.93Hemoglobin A OS=Casuarina glauca GN=SYMA PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionC21001D06Rv AbsLeaSub1 Citrus clementina cDNA clone C21001D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308567 ID=CX308567; Name=CX308567; organism=Citrus clementina; type=EST; length=446bp
TGCCTCTTTTATGGTTTCCAGTAGTGAAAATTTTGTGACCTCAAAATGCT
CATTAACAACACCATATTTGAAGTGGACAGCTCCTAATTTTTTTAGAGTT
GATTCTCTTACTGTCACTTTGCCTGCTTTCCTCAGTTGCACTGCTGATTC
ACACGTCATAACAAAAACAGACATGGCGTGGGGCTCGAGCTTCTGGTTCT
GCTCTAGAGGCACATTTGAGTCTCTCAAGAATGAGAACAGCTTTTGGGCT
GATGGTGCAATCTCAAAGATCCTCAAGAAGAATTTAAGACCCAATTCTCC
AGCATTCTTCTTCATTACATTCCATGACTTGACAACTAAAGCTTCTTGCT
CTTCAGTAAAGGCTCTACCTTCGTTAATGTTGGCCATTGATTTCTTTTGG
ACACCTGAGGATTGAATGTGATACACAAAATGTTGTTGAATCCCCG
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