CX308567

Overview
NameCX308567
Unique NameCX308567
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length446
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig735 contig Ccv1_Contig735:257..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308567 vs. ExPASy Swiss-Prot
Match: LGB4_PEA (Leghemoglobin Lb120-8 OS=Pisum sativum PE=2 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 7.989e-20
Identity = 55/120 (45.83%), Postives = 80/120 (66.67%), Query Frame = -3
Query:    1 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLEPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 360
            FTE+QEALV  SW + K+N     + F+  I + AP+A+ +FSFL+DS   +  + KL+ HA  VF M  +SA+QLR +G+V + + TL   GA+H + GV++ HF V K +LL+TIKEA
Sbjct:    3 FTEKQEALVNSSWELFKQNPS-YSVLFYTIILKKAPAAKGMFSFLKDS-AEVVDSPKLQAHAEKVFGMVHDSAIQLRASGEVVLGDVTL---GAIHIQKGVIDPHFVVVKEALLDTIKEA 117          
BLAST of CX308567 vs. ExPASy Swiss-Prot
Match: LGB2_PEA (Leghemoglobin Lb5-10 OS=Pisum sativum PE=2 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 1.780e-19
Identity = 54/120 (45.00%), Postives = 77/120 (64.17%), Query Frame = -3
Query:    1 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLEPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 360
            FT++QEALV  SW   K+N     + F+  I E AP+A+ LFSFL+D+   +E + KL+ HA  VF +  +SA QLR  G+V +  +T   LGA+H + GV + HF V K +LL+TIK+A
Sbjct:    3 FTDKQEALVNSSWESFKQNLSGNSILFYTIILEKAPAAKGLFSFLKDT-AGVEDSPKLQAHAEQVFGLVRDSAAQLRTKGEVVLGNAT---LGAIHVQRGVTDPHFVVVKEALLQTIKKA 118          
BLAST of CX308567 vs. ExPASy Swiss-Prot
Match: LGB3_VICFA (Leghemoglobin 49 OS=Vicia faba PE=2 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 5.178e-19
Identity = 54/120 (45.00%), Postives = 78/120 (65.00%), Query Frame = -3
Query:    1 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLEPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 360
            FT++QEALV  SW   K+N     + F+  I E AP+A+ +FSFL+DS   +  + KL+ HA  VF M  +SA+QL+  G+V ++  +L   GA+H + GVV+ HF V K +LL+TIKEA
Sbjct:    3 FTQQQEALVNSSWESFKQNPS-YSVLFYTIILEKAPAAKGMFSFLKDS-AGVVDSPKLQAHAEQVFGMVRDSAIQLQATGEVVLKNGSL---GAIHIQKGVVDPHFVVVKEALLKTIKEA 117          
BLAST of CX308567 vs. ExPASy Swiss-Prot
Match: LGB2_SESRO (Leghemoglobin 2 OS=Sesbania rostrata GN=GLB2 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.507e-18
Identity = 52/120 (43.33%), Postives = 77/120 (64.17%), Query Frame = -3
Query:    1 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLEPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 360
            FTE+QEALV  S+   K+N     + F+  I E AP+A+ +FSFL+DS+   + N  L+ HA  VF +  +SA QLR  G V + +++   LG+VH + GV++ HF V K +LL+T+KEA
Sbjct:    3 FTEKQEALVNASYEAFKQNLPGNSVLFYSFILEKAPAAKGMFSFLKDSDGVPQNNPSLQAHAEKVFGLVRDSAAQLRATGVVVLADAS---LGSVHVQKGVLDPHFVVVKEALLKTLKEA 119          
BLAST of CX308567 vs. ExPASy Swiss-Prot
Match: LGB1_MEDTR (Leghemoglobin 1 OS=Medicago truncatula GN=LB1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.968e-18
Identity = 53/121 (43.80%), Postives = 78/121 (64.46%), Query Frame = -3
Query:    1 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLEPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 363
            +FT++QEALV  S+   K+N     + F+  I E AP+A+ LFSFL+DS   ++ + +L+ HA  VF +  +SA QLR  G V + ++    LGA+H + GVV+ HF V K +LL+TIKEA
Sbjct:    2 SFTDKQEALVNSSYEAFKQNLSGYSVFFYTVILEKAPAAKGLFSFLKDS-AGVQDSPQLQAHAEKVFGLVRDSASQLRATGGVVLGDAA---LGAIHIQKGVVDPHFVVVKEALLKTIKEA 118          
BLAST of CX308567 vs. ExPASy Swiss-Prot
Match: LGB1_LUPLU (Leghemoglobin-1 OS=Lupinus luteus PE=1 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 4.384e-18
Identity = 52/118 (44.07%), Postives = 73/118 (61.86%), Query Frame = -3
Query:    4 TEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLEPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 357
            T+ Q ALV  S+     N  +   +FF  + EIAP A+ LFSFL+ S+   + N  L+ HA  VF +T E+A+QL+  G V   ++TLK LG+VH   GVV+ HF V K ++L+TIKE
Sbjct:    5 TDVQVALVKSSFEEFNANIPKNTHRFFTLVLEIAPGAKDLFSFLKGSSEVPQNNPDLQAHAGKVFKLTYEAAIQLQVNGAV-ASDATLKSLGSVHVSKGVVDAHFPVVKEAILKTIKE 121          
BLAST of CX308567 vs. ExPASy Swiss-Prot
Match: LGB_LOTJA (Leghemoglobin OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.725e-18
Identity = 51/120 (42.50%), Postives = 77/120 (64.17%), Query Frame = -3
Query:    1 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLEPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 360
            FT +QEALV  S+   KKN     + F+  I EIAP+A+ +FSFL++S    + + +L+ HA  VF +T ++A QL   G+VT+ +++   LGAVH +  V + HF V K +LL+T+KEA
Sbjct:    3 FTAQQEALVGSSYETFKKNLPTNSVLFYTVILEIAPTAKDMFSFLKESGP--KHSPQLQAHAEKVFALTRDAATQLVAKGEVTLADAS---LGAVHVQKAVTDPHFVVVKEALLQTVKEA 117          
BLAST of CX308567 vs. ExPASy Swiss-Prot
Match: LGB3_SESRO (Leghemoglobin 3 OS=Sesbania rostrata GN=GLB3 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 5.725e-18
Identity = 51/120 (42.50%), Postives = 76/120 (63.33%), Query Frame = -3
Query:    1 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLEPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 360
            FTE+QEALV  S+   K+N     + F+  I E AP+A+ +FSFL+D +   + N  L+ HA  VF +  +SA QLR  G V + +++   LG+VH + GV++ HF V K +LL+T+KEA
Sbjct:    3 FTEKQEALVNASYEAFKQNLPGNSVLFYSFILEKAPAAKGMFSFLKDFDEVPQNNPSLQAHAEKVFGLVRDSAAQLRATGVVVLADAS---LGSVHVQKGVLDPHFVVVKEALLKTLKEA 119          
BLAST of CX308567 vs. ExPASy Swiss-Prot
Match: LGBA_PHAVU (Leghemoglobin A OS=Phaseolus vulgaris PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 2.176e-17
Identity = 53/121 (43.80%), Postives = 72/121 (59.50%), Query Frame = -3
Query:    1 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLEPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 363
            AFTE+QEALV  SW   K N  +  + F+  I E AP+A+ LFSFL +   P   N KL  HA S+F +  +SA QLR  G V    +    LG++H + GV N+ F V K +LL+T+K+A
Sbjct:    3 AFTEKQEALVNSSWEAFKGNIPQYSVVFYTSILEKAPAAKNLFSFLANGVDP--TNPKLTAHAESLFGLVRDSAAQLRANGAVVADAA----LGSIHSQKGVSNDQFLVVKEALLKTLKQA 117          
BLAST of CX308567 vs. ExPASy Swiss-Prot
Match: LGB1_PEA (Leghemoglobin-1 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 2.176e-17
Identity = 53/120 (44.17%), Postives = 77/120 (64.17%), Query Frame = -3
Query:    1 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLEPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 360
            FT++QEALV  S +  K+N     + F+  + E AP+A+ LFSFL+D+   +E + KL+ HA  VF +  +SA QLR  G+V +  +TL   GA+H + GV N HF V K +LL+TIK+A
Sbjct:    3 FTDKQEALVNSS-SEFKQNLPGYSILFYTIVLEKAPAAKGLFSFLKDT-AGVEDSPKLQAHAEQVFGLVRDSAAQLRTKGEVVLGNATL---GAIHVQKGVTNPHFVVVKEALLQTIKKA 117          
The following BLAST results are available for this feature:
BLAST of CX308567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
LGB4_PEA7.989e-2045.83Leghemoglobin Lb120-8 OS=Pisum sativum PE=2 SV=3[more]
LGB2_PEA1.780e-1945.00Leghemoglobin Lb5-10 OS=Pisum sativum PE=2 SV=3[more]
LGB3_VICFA5.178e-1945.00Leghemoglobin 49 OS=Vicia faba PE=2 SV=3[more]
LGB2_SESRO1.507e-1843.33Leghemoglobin 2 OS=Sesbania rostrata GN=GLB2 PE=1 ... [more]
LGB1_MEDTR1.968e-1843.80Leghemoglobin 1 OS=Medicago truncatula GN=LB1 PE=2... [more]
LGB1_LUPLU4.384e-1844.07Leghemoglobin-1 OS=Lupinus luteus PE=1 SV=3[more]
LGB_LOTJA5.725e-1842.50Leghemoglobin OS=Lotus japonicus PE=2 SV=1[more]
LGB3_SESRO5.725e-1842.50Leghemoglobin 3 OS=Sesbania rostrata GN=GLB3 PE=2 ... [more]
LGBA_PHAVU2.176e-1743.80Leghemoglobin A OS=Phaseolus vulgaris PE=1 SV=2[more]
LGB1_PEA2.176e-1744.17Leghemoglobin-1 OS=Pisum sativum PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC21001D06Rv AbsLeaSub1 Citrus clementina cDNA clone C21001D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308567 ID=CX308567; Name=CX308567; organism=Citrus clementina; type=EST; length=446bp
TGCCTCTTTTATGGTTTCCAGTAGTGAAAATTTTGTGACCTCAAAATGCT
CATTAACAACACCATATTTGAAGTGGACAGCTCCTAATTTTTTTAGAGTT
GATTCTCTTACTGTCACTTTGCCTGCTTTCCTCAGTTGCACTGCTGATTC
ACACGTCATAACAAAAACAGACATGGCGTGGGGCTCGAGCTTCTGGTTCT
GCTCTAGAGGCACATTTGAGTCTCTCAAGAATGAGAACAGCTTTTGGGCT
GATGGTGCAATCTCAAAGATCCTCAAGAAGAATTTAAGACCCAATTCTCC
AGCATTCTTCTTCATTACATTCCATGACTTGACAACTAAAGCTTCTTGCT
CTTCAGTAAAGGCTCTACCTTCGTTAATGTTGGCCATTGATTTCTTTTGG
ACACCTGAGGATTGAATGTGATACACAAAATGTTGTTGAATCCCCG
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