CX308599

Overview
NameCX308599
Unique NameCX308599
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length351
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14605 contig Ccv1_Contig14605:197..547. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: ARFRP_BOVIN (ADP-ribosylation factor-related protein 1 OS=Bos taurus GN=ARFRP1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.526e-14
Identity = 34/103 (33.01%), Postives = 60/103 (58.25%), Query Frame = -3
Query:   41 LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI 349
            + L +I TT+   G N+ TV+        WD+GGQ++++ LW  Y+    G+I+V+DS D +R+ E++    +M+  + L    +LV ANKQD+   ++  +I
Sbjct:   48 MSLSKITTTV---GLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKQAFEKMVTSEALDGVPILVLANKQDVETCLSIPDI 147          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: ARFRP_RAT (ADP-ribosylation factor-related protein 1 OS=Rattus norvegicus GN=Arfrp1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.300e-14
Identity = 33/103 (32.04%), Postives = 62/103 (60.19%), Query Frame = -3
Query:   41 LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI 349
            + L +I TT+   G N+ TV+        WD+GGQ++++ LW  Y+    G+I+V+DS D +R+ E+++   ++++ + L    +LV ANKQD+   ++  +I
Sbjct:   48 MSLSKITTTV---GLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEKVVSSEALDGVPILVLANKQDVETCLSIPDI 147          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: ARFRP_MOUSE (ADP-ribosylation factor-related protein 1 OS=Mus musculus GN=Arfrp1 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.300e-14
Identity = 33/103 (32.04%), Postives = 62/103 (60.19%), Query Frame = -3
Query:   41 LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI 349
            + L +I TT+   G N+ TV+        WD+GGQ++++ LW  Y+    G+I+V+DS D +R+ E+++   ++++ + L    +LV ANKQD+   ++  +I
Sbjct:   48 MSLSKITTTV---GLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEKVVSSEALDGVPILVLANKQDVETCLSIPDI 147          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: SAR1B_DICDI (GTP-binding protein Sar1B OS=Dictyostelium discoideum GN=sarB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.309e-14
Identity = 37/110 (33.64%), Postives = 66/110 (60.00%), Query Frame = -3
Query:   23 LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI-FVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 349
            L  G + + IPT+  N E+  Y N++F  +D+GGQ  +R LW+ Y  +++ +I F+VDS+D + I+E++ E+H +L ++ L  + LL+  +K D     N   + D L +
Sbjct:   40 LVTGSLKSHIPTLRPNAESFTYGNVNFKAYDLGGQQNLRFLWKQYVPDSKTIIVFMVDSSDYNSIIESKSEIHDILGDEHLSQSPLLILGSKCDAKGHHNRENLIDLLDI 149          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: ARL15_PONAB (ADP-ribosylation factor-like protein 15 OS=Pongo abelii GN=ARL15 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.628e-14
Identity = 40/104 (38.46%), Postives = 58/104 (55.77%), Query Frame = -3
Query:   14 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS-NDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 322
            + T GF+++ V ++N    V ++GG D IR  W  Y+Q +QG+IFV+DS +  D +  AR+ELH  L   +L     L+ AN QD P A +  EI     L  L
Sbjct:   61 VSTTGFSIKAVPFQNAILNVKELGGADNIRKYWSRYYQGSQGVIFVLDSASSEDDLEAARNELHSALQHPQLCTLPFLILANHQDKPAARSVQEIKKYFELEPL 164          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: ARL15_MOUSE (ADP-ribosylation factor-like protein 15 OS=Mus musculus GN=Arl15 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.628e-14
Identity = 40/104 (38.46%), Postives = 58/104 (55.77%), Query Frame = -3
Query:   14 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS-NDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 322
            + T GF+++ V ++N    V ++GG D IR  W  Y+Q +QG+IFV+DS +  D +  AR+ELH  L   +L     L+ AN QD P A +  EI     L  L
Sbjct:   61 VSTTGFSIKAVPFQNAVLNVKELGGADNIRKYWSRYYQGSQGVIFVLDSASSEDDLETARNELHSALQHPQLCTLPFLILANHQDKPAARSVQEIKKYFELEPL 164          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: ARL15_HUMAN (ADP-ribosylation factor-like protein 15 OS=Homo sapiens GN=ARL15 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.628e-14
Identity = 40/104 (38.46%), Postives = 58/104 (55.77%), Query Frame = -3
Query:   14 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS-NDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 322
            + T GF+++ V ++N    V ++GG D IR  W  Y+Q +QG+IFV+DS +  D +  AR+ELH  L   +L     L+ AN QD P A +  EI     L  L
Sbjct:   61 VSTTGFSIKAVPFQNAILNVKELGGADNIRKYWSRYYQGSQGVIFVLDSASSEDDLEAARNELHSALQHPQLCTLPFLILANHQDKPAARSVQEIKKYFELEPL 164          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: ARL15_BOVIN (ADP-ribosylation factor-like protein 15 OS=Bos taurus GN=ARL15 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.628e-14
Identity = 39/106 (36.79%), Postives = 59/106 (55.66%), Query Frame = -3
Query:   14 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS-NDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 328
            + + T GF+++ V ++N    V ++GG D IR  W  Y+Q +QG+IFV+DS +  D +  AR+ELH  L   +L     L+ AN QD P A +  E+     L  L
Sbjct:   59 SVVSTTGFSIKAVPFQNAILNVKELGGADNIRKYWSRYYQGSQGVIFVLDSASSEDDLETARNELHSALQHPQLCTLPFLILANHQDKPAARSVQEVKKYFELEPL 164          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: SAR1_PICGU (Small COPII coat GTPase SAR1 OS=Pichia guilliermondii GN=SAR1 PE=3 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 7.351e-14
Identity = 36/111 (32.43%), Postives = 60/111 (54.05%), Query Frame = -3
Query:   17 LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS 349
            LK   + T  PT+    E +   ++ FT +D+GG  + R LW+ YF    G++F+VD+ D +R+ E++ EL  +   +EL     L+  NK D   A+   E+   LGL++
Sbjct:   40 LKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADTERLAESKAELESLFRIEELSQVPFLILGNKIDKSTAIGEMELKSALGLYN 150          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: SAR1_EMENI (Small COPII coat GTPase sar1 OS=Emericella nidulans GN=sar1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.351e-14
Identity = 39/110 (35.45%), Postives = 60/110 (54.55%), Query Frame = -3
Query:   20 LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 349
            LK   +    PT     E +   N  FT +D+GG  + R LW+ YF    G++F+VD+ D +R  E++ EL  +L  +EL     LV  NK D P+A++  E+  +LGL+
Sbjct:   40 LKNDRVAILSPTAHPTSEELVIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELSKVPFLVLGNKIDHPDAVSEDELRHQLGLY 149          
The following BLAST results are available for this feature:
BLAST of CX308599 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
ARFRP_BOVIN2.526e-1433.01ADP-ribosylation factor-related protein 1 OS=Bos t... [more]
ARFRP_RAT3.300e-1432.04ADP-ribosylation factor-related protein 1 OS=Rattu... [more]
ARFRP_MOUSE3.300e-1432.04ADP-ribosylation factor-related protein 1 OS=Mus m... [more]
SAR1B_DICDI4.309e-1433.64GTP-binding protein Sar1B OS=Dictyostelium discoid... [more]
ARL15_PONAB5.628e-1438.46ADP-ribosylation factor-like protein 15 OS=Pongo a... [more]
ARL15_MOUSE5.628e-1438.46ADP-ribosylation factor-like protein 15 OS=Mus mus... [more]
ARL15_HUMAN5.628e-1438.46ADP-ribosylation factor-like protein 15 OS=Homo sa... [more]
ARL15_BOVIN5.628e-1436.79ADP-ribosylation factor-like protein 15 OS=Bos tau... [more]
SAR1_PICGU7.351e-1432.43Small COPII coat GTPase SAR1 OS=Pichia guilliermon... [more]
SAR1_EMENI7.351e-1435.45Small COPII coat GTPase sar1 OS=Emericella nidulan... [more]

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Properties
Property NameValue
Genbank descriptionC21001G02Rv AbsLeaSub1 Citrus clementina cDNA clone C21001G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308599 ID=CX308599; Name=CX308599; organism=Citrus clementina; type=EST; length=351bp
AGTGGCGCTGCCTGAGGGAGTGGAGGCCAAGCTTATCAGTAATCTCAGCA
GCATTCATTGCATTTGGAAGATCCTGTTTGTTAGCAAATACAAGCAACAC
TGCATCTCGCAGCTCATCCTCATTCAACATCCTATGCAATTCATCCCTTG
CTTCTACAATACGGTCTCTGTCATTGCTGTCCACAACAAAAATGAGACCT
TGAGTGTTCTGGAAATAATGCCTCCACAAGGGACGAATCTTGTCCTGGCC
ACCAACATCCCACACAGTGAAACTGATGTTTTTATATTCAACGGTCTCCA
CATTAAACCCAATGGTAGGAATTGTGGTGACAATCTCTCCAAGCTTGAGC
T
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