CX308599

Overview
NameCX308599
Unique NameCX308599
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length351
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14605 contig Ccv1_Contig14605:197..547. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: SAR1_PICST (Small COPII coat GTPase SAR1 OS=Pichia stipitis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.134e-14
Identity = 37/111 (33.33%), Postives = 61/111 (54.95%), Query Frame = -3
Query:   17 LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS 349
            LK   + T  PT+    E +   ++ FT +D+GG  + R LW+ YF    G++F+VD+ D +R  E++ EL  +   +EL     L+  NK D+P A+   E+   LGL++
Sbjct:   40 LKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADPERFAESKAELESLFKIEELSHVPFLILGNKIDVPTAVGEMELKSALGLYN 150          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: SAR1_LODEL (Small COPII coat GTPase SAR1 OS=Lodderomyces elongisporus GN=SAR1 PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.134e-14
Identity = 36/111 (32.43%), Postives = 62/111 (55.86%), Query Frame = -3
Query:   17 LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS 349
            LK   + T  PT+    E +   ++ FT +D+GG  + R LW+ YF    G++F+VD+ D +R  E++ EL  +   +EL     ++  NK D+P A+   E+ + LGL++
Sbjct:   40 LKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADSERFAESKAELESLFKIEELSQVPFVILGNKIDVPTAVGEMELKNALGLYN 150          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: SAR1_CANAL (Small COPII coat GTPase SAR1 OS=Candida albicans GN=SAR1 PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.134e-14
Identity = 36/111 (32.43%), Postives = 62/111 (55.86%), Query Frame = -3
Query:   17 LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS 349
            LK   + T  PT+    E +   ++ FT +D+GG  + R LW+ YF    G++F+VD+ D +R  E++ EL  +   +EL     ++  NK D+P A+   E+ + LGL++
Sbjct:   40 LKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADTERFAESKAELESLFRIEELSQVPFVILGNKIDVPTAVGEMELKNALGLYN 150          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: ARL10_HUMAN (ADP-ribosylation factor-like protein 10 OS=Homo sapiens GN=ARL10 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.134e-14
Identity = 41/103 (39.81%), Postives = 62/103 (60.19%), Query Frame = -3
Query:   14 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 322
            IPT GFN   +  K+    + ++GG   +R  W+ +      L+FVVDS DR R+  AR ELH++L++D   D  ++V ANKQDL  AM+  E+  +LGL ++
Sbjct:  107 IPTWGFNSVRLPTKDFEVDLLEIGGSQNLRFYWKEFVSEVDVLVFVVDSADRLRLPWARQELHKLLDKDP--DLPVVVVANKQDLSEAMSMGELQRELGLQAI 207          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: SAR1_YARLI (Small COPII coat GTPase SAR1 OS=Yarrowia lipolytica GN=SAR1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.481e-14
Identity = 37/110 (33.64%), Postives = 62/110 (56.36%), Query Frame = -3
Query:   20 LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 349
            LK   +  + PT+    E +   N  FT +D+GG  + R +W+ YF    G++F+VD+ D  R  E++ EL  +L  ++L+    L+  NK D+P A++  E+ D LGL+
Sbjct:   40 LKNDRMAVSNPTVHPTSEELSIGNCKFTTFDLGGHIQARRVWKDYFPEVNGIVFLVDAADPTRFAESKAELDSLLAIEQLKTVPFLILGNKIDMPQAVSELELKDALGLY 149          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: SAR1_NEOFI (Small COPII coat GTPase sar1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sar1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.934e-14
Identity = 39/110 (35.45%), Postives = 61/110 (55.45%), Query Frame = -3
Query:   20 LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 349
            LK   + T  PT     E +   N  FT +D+GG  + R LW+ YF    G++F+VD+ D +R  E++ EL  +L  +EL     L+  NK D P+A++  E+  +LGL+
Sbjct:   40 LKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLY 149          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: SAR1_ASPFU (Small COPII coat GTPase sar1 OS=Aspergillus fumigatus GN=sar1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.934e-14
Identity = 39/110 (35.45%), Postives = 61/110 (55.45%), Query Frame = -3
Query:   20 LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 349
            LK   + T  PT     E +   N  FT +D+GG  + R LW+ YF    G++F+VD+ D +R  E++ EL  +L  +EL     L+  NK D P+A++  E+  +LGL+
Sbjct:   40 LKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLY 149          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: SAR1_ASPCL (Small COPII coat GTPase sar1 OS=Aspergillus clavatus GN=sar1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.934e-14
Identity = 39/110 (35.45%), Postives = 61/110 (55.45%), Query Frame = -3
Query:   20 LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 349
            LK   + T  PT     E +   N  FT +D+GG  + R LW+ YF    G++F+VD+ D +R  E++ EL  +L  +EL     L+  NK D P+A++  E+  +LGL+
Sbjct:   40 LKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELSKVPFLILGNKIDHPDAVSEDELRHQLGLY 149          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: SAR1_CRYNE (Small COPII coat GTPase SAR1 OS=Cryptococcus neoformans GN=SAR1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.526e-14
Identity = 38/110 (34.55%), Postives = 61/110 (55.45%), Query Frame = -3
Query:   20 LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 349
            LK   + T  PT+    E +   N+ FT +D+GG  + R LWR YF    G++F+VDS D +R  E++ EL  +L+ + L     L+  NK D   A++  ++  +LGL+
Sbjct:   40 LKNDRLATLQPTLHPTSEELAIGNVKFTTYDLGGHIQARRLWRDYFPEVDGIVFLVDSADAERFAESKAELDSLLSIESLAQVPFLILGNKIDAYGAVSEEQLRHELGLY 149          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: ARL3_YEAST (ADP-ribosylation factor-like protein 3 OS=Saccharomyces cerevisiae GN=ARL3 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.526e-14
Identity = 38/97 (39.18%), Postives = 59/97 (60.82%), Query Frame = -3
Query:   35 PTIGFNVET--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITD 319
            PT+G NV T  V+ K I    WDVGGQ+ +R +W  Y+    G+IF+VDS+DR+R+ E    L  ++ ++E+    +L+ ANKQD  + M   +I +
Sbjct:   53 PTVGQNVATIPVDSKQI-LKFWDVGGQESLRSMWSEYYSLCHGIIFIVDSSDRERLDECSTTLQSVVMDEEIEGVPILMLANKQDRQDRMEVQDIKE 148          
The following BLAST results are available for this feature:
BLAST of CX308599 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
SAR1_PICST1.134e-1433.33Small COPII coat GTPase SAR1 OS=Pichia stipitis GN... [more]
SAR1_LODEL1.134e-1432.43Small COPII coat GTPase SAR1 OS=Lodderomyces elong... [more]
SAR1_CANAL1.134e-1432.43Small COPII coat GTPase SAR1 OS=Candida albicans G... [more]
ARL10_HUMAN1.134e-1439.81ADP-ribosylation factor-like protein 10 OS=Homo sa... [more]
SAR1_YARLI1.481e-1433.64Small COPII coat GTPase SAR1 OS=Yarrowia lipolytic... [more]
SAR1_NEOFI1.934e-1435.45Small COPII coat GTPase sar1 OS=Neosartorya fische... [more]
SAR1_ASPFU1.934e-1435.45Small COPII coat GTPase sar1 OS=Aspergillus fumiga... [more]
SAR1_ASPCL1.934e-1435.45Small COPII coat GTPase sar1 OS=Aspergillus clavat... [more]
SAR1_CRYNE2.526e-1434.55Small COPII coat GTPase SAR1 OS=Cryptococcus neofo... [more]
ARL3_YEAST2.526e-1439.18ADP-ribosylation factor-like protein 3 OS=Saccharo... [more]

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Properties
Property NameValue
Genbank descriptionC21001G02Rv AbsLeaSub1 Citrus clementina cDNA clone C21001G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308599 ID=CX308599; Name=CX308599; organism=Citrus clementina; type=EST; length=351bp
AGTGGCGCTGCCTGAGGGAGTGGAGGCCAAGCTTATCAGTAATCTCAGCA
GCATTCATTGCATTTGGAAGATCCTGTTTGTTAGCAAATACAAGCAACAC
TGCATCTCGCAGCTCATCCTCATTCAACATCCTATGCAATTCATCCCTTG
CTTCTACAATACGGTCTCTGTCATTGCTGTCCACAACAAAAATGAGACCT
TGAGTGTTCTGGAAATAATGCCTCCACAAGGGACGAATCTTGTCCTGGCC
ACCAACATCCCACACAGTGAAACTGATGTTTTTATATTCAACGGTCTCCA
CATTAAACCCAATGGTAGGAATTGTGGTGACAATCTCTCCAAGCTTGAGC
T
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