CX308600

Overview
NameCX308600
Unique NameCX308600
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length294
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig123 contig Ccv1_Contig123:205..498. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS15B_DROME (40S ribosomal protein S15Ab OS=Drosophila melanogaster GN=RpS15Ab PE=2 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 1.089e-33
Identity = 65/83 (78.31%), Postives = 73/83 (87.95%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            GEFE V+DHRAGKIVV L GRLNKCGVISPRFD  + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct:   48 GEFEIVEDHRAGKIVVNLTGRLNKCGVISPRFDAPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 130          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS22_NEUCR (40S ribosomal protein S22 OS=Neurospora crassa GN=rps-22 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.858e-33
Identity = 62/83 (74.70%), Postives = 76/83 (91.57%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            GEFE VDDHR+GKIVV+LNGR+NKCGVISPR++V + E+E W  +LLP+RQFGY++LTTSAGIMDHEEARRK+V GK++GFFY
Sbjct:   48 GEFEEVDDHRSGKIVVQLNGRMNKCGVISPRYNVRLAELEKWVVKLLPARQFGYVILTTSAGIMDHEEARRKHVSGKIIGFFY 130          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS15A_PONAB (40S ribosomal protein S15a OS=Pongo abelii GN=RPS15A PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.858e-33
Identity = 65/83 (78.31%), Postives = 73/83 (87.95%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            GEFE +DDHRAGKIVV L GRLNKCGVISPRFDV +K++E W   L PSRQFG+IVLTTSAGIMDHEEARRK+ GGK+LGFF+
Sbjct:   48 GEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLFPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS15A_ICTPU (40S ribosomal protein S15a OS=Ictalurus punctatus GN=rps15a PE=2 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 2.427e-33
Identity = 66/83 (79.52%), Postives = 73/83 (87.95%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            GEFE +DDHRAGKIVV L GRLNKCGVISPRFDV +K++E W   LLPSRQFG+IVLTTSAGIMDHEEARRK+ GGK LGFF+
Sbjct:   48 GEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKSLGFFF 130          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS15A_DICDI (40S ribosomal protein S15a OS=Dictyostelium discoideum GN=rps15a PE=2 SV=3)

HSP 1 Score: 132.494 bits (332), Expect = 6.610e-31
Identity = 61/83 (73.49%), Postives = 72/83 (86.75%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            GEFE VDDHR+GKIV++L GR+NKCGVISPRFDV + EIE W + LLPSRQFG+IVLTTS GIMDH EA+ ++ GGK+LGFFY
Sbjct:   48 GEFEIVDDHRSGKIVIDLIGRINKCGVISPRFDVTLDEIEKWASYLLPSRQFGHIVLTTSLGIMDHNEAKTRHTGGKLLGFFY 130          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS22_SCHPO (40S ribosomal protein S22 OS=Schizosaccharomyces pombe GN=rps22a PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.627e-29
Identity = 58/82 (70.73%), Postives = 69/82 (84.15%), Query Frame = -3
Query:   44 EFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 289
            EF  +DDHR+GKIV++LNGR+NKCGVISPRF+V +K+IE W  +LLPSRQ G IVLTTS GIM H EAR K+ GGK+LGFFY
Sbjct:   49 EFTEIDDHRSGKIVIQLNGRINKCGVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS22_AGABI (40S ribosomal protein S22 OS=Agaricus bisporus GN=rps22 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.055e-28
Identity = 60/83 (72.29%), Postives = 68/83 (81.93%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            GEFE +DDHR GKI+V+LNGRLNK GVISPRF+V    IE W   LLPSR  G IVLTTS+GI+DHEEARRKNVGGK+LG+ Y
Sbjct:   48 GEFEIIDDHRGGKIIVQLNGRLNKTGVISPRFNVQHNRIEQWINYLLPSRGIGIIVLTTSSGILDHEEARRKNVGGKLLGYVY 130          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: R15A5_ARATH (40S ribosomal protein S15a-5 OS=Arabidopsis thaliana GN=RPS15AE PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.294e-22
Identity = 47/81 (58.02%), Postives = 62/81 (76.54%), Query Frame = -3
Query:   44 FEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 286
            F+  D HR G+I V+L GR+N C  ++ R DV  KEIE +T R LP+RQ+GY+V+TT  GI+DHEEA ++NVGG+VLGFFY
Sbjct:   49 FQVYDPHRVGRITVDLQGRVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVGGQVLGFFY 129          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_UNCMA (30S ribosomal protein S8P OS=Uncultured methanogenic archaeon RC-I GN=rps8p PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.635e-21
Identity = 42/83 (50.60%), Postives = 62/83 (74.70%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            GEFE+VD+ +AG++ V+L G++NKCGV+ PRF VG  E+E W  R LP+R FG ++LTTS G+M H +A +  +GG++L + Y
Sbjct:   48 GEFEFVDNGKAGQLKVKLIGKINKCGVVKPRFAVGKTEMEKWEKRYLPARNFGTLILTTSKGVMSHYDAAKMGIGGEILAYVY 130          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_METPE (30S ribosomal protein S8P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rps8p PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.748e-21
Identity = 40/83 (48.19%), Postives = 60/83 (72.29%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            G F+ +DD R G+  V L+GR+NKCG I+PR+ VG+ E+E W  R LP + FG ++L+TS G++ H +AR+  +GG++LGF Y
Sbjct:   48 GSFDMIDDGRGGQFRVHLSGRINKCGAITPRYSVGLDELEYWETRYLPGKNFGLLILSTSRGVLTHNQARQNGIGGELLGFVY 130          
The following BLAST results are available for this feature:
BLAST of CX308600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
RS15B_DROME1.089e-3378.3140S ribosomal protein S15Ab OS=Drosophila melanoga... [more]
RS22_NEUCR1.858e-3374.7040S ribosomal protein S22 OS=Neurospora crassa GN=... [more]
RS15A_PONAB1.858e-3378.3140S ribosomal protein S15a OS=Pongo abelii GN=RPS1... [more]
RS15A_ICTPU2.427e-3379.5240S ribosomal protein S15a OS=Ictalurus punctatus ... [more]
RS15A_DICDI6.610e-3173.4940S ribosomal protein S15a OS=Dictyostelium discoi... [more]
RS22_SCHPO3.627e-2970.7340S ribosomal protein S22 OS=Schizosaccharomyces p... [more]
RS22_AGABI1.055e-2872.2940S ribosomal protein S22 OS=Agaricus bisporus GN=... [more]
R15A5_ARATH4.294e-2258.0240S ribosomal protein S15a-5 OS=Arabidopsis thalia... [more]
RS8_UNCMA3.635e-2150.6030S ribosomal protein S8P OS=Uncultured methanogen... [more]
RS8_METPE4.748e-2148.1930S ribosomal protein S8P OS=Methanosphaerula palu... [more]

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Properties
Property NameValue
Genbank descriptionC21001G03Rv AbsLeaSub1 Citrus clementina cDNA clone C21001G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308600 ID=CX308600; Name=CX308600; organism=Citrus clementina; type=EST; length=294bp
ACAAACAAAACTCAAGTCCCATTCTCAATATGAACTTTGCCTAGTAGAAA
AAACCAAGCACTTTACCACCAACATTCTTCCTTCTCGCCTCTTCGTGGTC
CATAATGCCAGCAGAAGTTGTCAGCACAATGTATCCAAACTGTCTTGAGG
GAAGCAACCTAGCAGTCCAACCTTCAATCTCCTTGACGCCAACATCAAAA
CGGGGACTGATAACCCCACATTTGTTCAATCTTCCGTTCAGTTCAACCAC
AATCTTACCAGCTCTGTGGTCATCAACATACTCAAACTCACCAA
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