CX308600

Overview
NameCX308600
Unique NameCX308600
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length294
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig123 contig Ccv1_Contig123:205..498. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_NATPD (30S ribosomal protein S8P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps8p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.605e-19
Identity = 37/81 (45.68%), Postives = 56/81 (69.14%), Query Frame = -3
Query:   44 FEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 286
            F++VDD +AG+  VEL G +N+CG + PR+  G  E E W  R LP+R +G +++TTS G+M H EAR + +GG+V+ + Y
Sbjct:   50 FQFVDDGKAGRFEVELKGAINECGAVKPRYSAGADEFEKWEKRFLPARDYGTLIVTTSHGVMSHYEAREQGIGGQVIAYVY 130          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_METS3 (30S ribosomal protein S8P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps8p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.605e-19
Identity = 41/83 (49.40%), Postives = 57/83 (68.67%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            G FEY+DD+RAG+  VEL G +NKCGVI PR  V   E E +  R LP++ FG +++TT  GIM H EA+ + +GG++L + Y
Sbjct:   48 GNFEYIDDNRAGQFKVELEGNINKCGVIKPRHAVKKDEFEKFEKRYLPAKNFGILIVTTPEGIMTHYEAKERGIGGRLLAYMY 130          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_METB6 (30S ribosomal protein S8P OS=Methanoregula boonei (strain 6A8) GN=rps8p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.605e-19
Identity = 38/81 (46.91%), Postives = 59/81 (72.84%), Query Frame = -3
Query:   44 FEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 286
            FE+++D R G++ V L G++NKCG I PRF V + E+E W  + LP + FG ++L+TS G+M H +ARR+ +GG++LG+ Y
Sbjct:   50 FEFIEDGRGGQLKVHLTGKINKCGAICPRFSVQLDEMEYWEKQYLPGKNFGLMILSTSHGVMSHVQARREGIGGELLGYVY 130          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_HALWD (30S ribosomal protein S8P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps8p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.605e-19
Identity = 38/81 (46.91%), Postives = 56/81 (69.14%), Query Frame = -3
Query:   44 FEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 286
            FE+VDD +AG+  VEL+G +N+CG + PR+  G  E E W  R LP+R +G +++TTS G+M H EAR   +GG+V+ + Y
Sbjct:   50 FEFVDDGKAGRFEVELSGGINECGAVKPRYSAGADEFERWEKRYLPARDYGALIVTTSHGVMSHYEARETGIGGQVIAYVY 130          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_METMA (30S ribosomal protein S8P OS=Methanosarcina mazei GN=rps8p PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.402e-19
Identity = 40/83 (48.19%), Postives = 57/83 (68.67%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            G+FE++DD +AG   V L GR+NKCG I PR+ VG    E W  + LP++ FG ++LTTS+G+M   EAR K +GG++L + Y
Sbjct:   48 GDFEFIDDGKAGIYSVTLVGRINKCGAIKPRYSVGTGSFERWEKQFLPAKNFGALILTTSSGVMSQYEARDKKIGGQLLAYVY 130          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_THESM (30S ribosomal protein S8P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps8p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.444e-19
Identity = 41/83 (49.40%), Postives = 58/83 (69.88%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            GEFE++DD RAG   V+L G++NK G I PRF V  KE E W  R LP+ +FG +V++TS G+M H+EA  K +GG+++ + Y
Sbjct:   48 GEFEFIDDGRAGIYRVQLLGKVNKAGAIKPRFSVKAKEYEKWEKRFLPAFEFGILVVSTSQGVMTHKEALEKGIGGRLIAYVY 130          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_THEGJ (30S ribosomal protein S8P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps8p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.444e-19
Identity = 40/83 (48.19%), Postives = 58/83 (69.88%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            GEFE++DD RAG   V+L G++NK G I PRF V  K  E W  R LP+ +FG ++++TS G+M H+EAR K +GG+++ + Y
Sbjct:   48 GEFEFIDDGRAGIYRVQLIGKINKAGAIKPRFPVKAKNYEYWEKRFLPAFEFGILIVSTSQGVMTHKEAREKGIGGRLIAYVY 130          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_PYRHO (30S ribosomal protein S8P OS=Pyrococcus horikoshii GN=rps8p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.444e-19
Identity = 40/83 (48.19%), Postives = 58/83 (69.88%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            GEFE++DD RAG   V+L GR+NK G I PRF V   E E W  R LP+ +FG ++++TS G+M H+EAR + +GG+++ + Y
Sbjct:   48 GEFEFIDDGRAGVYRVQLLGRINKAGAIKPRFPVKATEYEKWEKRFLPAFEFGILIVSTSQGVMSHKEARDRGIGGRLIAYVY 130          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_METKA (30S ribosomal protein S8P OS=Methanopyrus kandleri GN=rps8p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.444e-19
Identity = 40/83 (48.19%), Postives = 57/83 (68.67%), Query Frame = -3
Query:   44 GEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 292
            G FE++DD R+GK +V+L GR+N CGVI PR  V   E E W  R LP+R FG +++TT  G+M H EA+ + +GG++L + Y
Sbjct:   48 GSFEFIDDGRSGKFLVKLVGRINDCGVIKPRHPVKKDEWEYWEQRYLPARDFGLLIVTTPEGVMSHYEAKERGIGGRLLAYVY 130          
BLAST of CX308600 vs. ExPASy Swiss-Prot
Match: RS8_HALMA (30S ribosomal protein S8P OS=Haloarcula marismortui GN=rps8p PE=1 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 4.444e-19
Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = -3
Query:   44 FEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 286
            F +VDD +AG+  VEL G +N+CG + PR+  G  E E W  R LP+R +G +V+TTS GIM H EAR + VGG+V+ + Y
Sbjct:   50 FSFVDDGKAGEFEVELKGAINECGPVKPRYSAGADEFEKWEKRFLPARDYGTLVVTTSHGIMSHYEAREQGVGGQVIAYVY 130          
The following BLAST results are available for this feature:
BLAST of CX308600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
RS8_NATPD2.605e-1945.6830S ribosomal protein S8P OS=Natronomonas pharaoni... [more]
RS8_METS32.605e-1949.4030S ribosomal protein S8P OS=Methanobrevibacter sm... [more]
RS8_METB62.605e-1946.9130S ribosomal protein S8P OS=Methanoregula boonei ... [more]
RS8_HALWD2.605e-1946.9130S ribosomal protein S8P OS=Haloquadratum walsbyi... [more]
RS8_METMA3.402e-1948.1930S ribosomal protein S8P OS=Methanosarcina mazei ... [more]
RS8_THESM4.444e-1949.4030S ribosomal protein S8P OS=Thermococcus sibiricu... [more]
RS8_THEGJ4.444e-1948.1930S ribosomal protein S8P OS=Thermococcus gammatol... [more]
RS8_PYRHO4.444e-1948.1930S ribosomal protein S8P OS=Pyrococcus horikoshii... [more]
RS8_METKA4.444e-1948.1930S ribosomal protein S8P OS=Methanopyrus kandleri... [more]
RS8_HALMA4.444e-1949.3830S ribosomal protein S8P OS=Haloarcula marismortu... [more]

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Properties
Property NameValue
Genbank descriptionC21001G03Rv AbsLeaSub1 Citrus clementina cDNA clone C21001G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308600 ID=CX308600; Name=CX308600; organism=Citrus clementina; type=EST; length=294bp
ACAAACAAAACTCAAGTCCCATTCTCAATATGAACTTTGCCTAGTAGAAA
AAACCAAGCACTTTACCACCAACATTCTTCCTTCTCGCCTCTTCGTGGTC
CATAATGCCAGCAGAAGTTGTCAGCACAATGTATCCAAACTGTCTTGAGG
GAAGCAACCTAGCAGTCCAACCTTCAATCTCCTTGACGCCAACATCAAAA
CGGGGACTGATAACCCCACATTTGTTCAATCTTCCGTTCAGTTCAACCAC
AATCTTACCAGCTCTGTGGTCATCAACATACTCAAACTCACCAA
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