CX308644

Overview
NameCX308644
Unique NameCX308644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length498
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: SERK5_ARATH (Somatic embryogenesis receptor kinase 5 OS=Arabidopsis thaliana GN=SERK5 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 4.838e-12
Identity = 39/97 (40.21%), Postives = 62/97 (63.92%), Query Frame = 3
Query:  213 YSYKDLQKATCNFT--TLIGQGAFGPVYKAQMSTGETVAVKVLATD-SKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLAS 494
            +S ++L  AT  F+   ++G+G FG +YK +++    VAVK L  + +K GE +FQTEV ++    HRNL+ L G+C    + +LVY +M+ GS+AS
Sbjct:  263 FSLRELLVATEKFSKRNVLGKGRFGILYKGRLADDTLVAVKRLNEERTKGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVAS 359          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: PTI1_SOLLC (Pto-interacting protein 1 OS=Solanum lycopersicum GN=PTI1 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 4.838e-12
Identity = 42/131 (32.06%), Postives = 68/131 (51.91%), Query Frame = 3
Query:  108 GPESPVKSGWNGNGKSMWLEGFKRSNVVSAS--GIPEYSYKDLQKATCNFTT--LIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            GP     S  N  G+       + +  V+     +P  +  +L+  T NF +  LIG+G++G VY   + +G   A+K L + SKQ ++EF  +V ++ RL   N+V L+GYC + G  +L Y +   GSL
Sbjct:   19 GPFMAHNSAGNNGGQRATESAQRETQTVNIQPIAVPSIAVDELKDITDNFGSKALIGEGSYGRVYHGVLKSGRAAAIKKLDS-SKQPDREFLAQVSMVSRLKDENVVELLGYCVDGGFRVLAYEYAPNGSL 148          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: ACCR1_ARATH (Serine/threonine-protein kinase-like protein CCR1 OS=Arabidopsis thaliana GN=CCR1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.319e-12
Identity = 39/99 (39.39%), Postives = 59/99 (59.60%), Query Frame = 3
Query:  213 YSYKDLQKATCNFTTL--IGQGAFGPVYKAQMSTGETVAVKVL--ATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLASH 497
            +   +L+ AT  F     +G+G++G VYKA ++ G  VAVK    AT      +EF+TE+ +L  + H N+VNL+GY  E G+ +LVY +M  G+L  H
Sbjct:  508 FRLSELKDATNGFKEFNELGRGSYGFVYKAVLADGRQVAVKRANAATIIHTNTREFETELEILCNIRHCNIVNLLGYSTEMGERLLVYEYMPHGTLHDH 606          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: WAKLC_ARATH (Wall-associated receptor kinase-like 3 OS=Arabidopsis thaliana GN=WAKL3 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.078e-11
Identity = 37/94 (39.36%), Postives = 57/94 (60.64%), Query Frame = 3
Query:  213 YSYKDLQKATCNFTT--LIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            +S ++L+KAT NF+   ++GQG  G VYK  +  G  VAVK      +   +EF  E++LL +++HRN+V L+G C E    +LVY ++  G L
Sbjct:  416 FSSRELEKATDNFSIDRVLGQGGQGTVYKRMLVDGSIVAVKRSKVVDEDKMEEFINEIVLLSQINHRNIVKLLGCCLETEVPILVYEYIPNGDL 509          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: WAKLP_ARATH (Wall-associated receptor kinase-like 15 OS=Arabidopsis thaliana GN=WAKL15 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.408e-11
Identity = 38/106 (35.85%), Postives = 63/106 (59.43%), Query Frame = 3
Query:  189 VSASGIPE-YSYKDLQKATCNF--TTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLASH 497
            ++++G+   ++ K++ KAT NF  + L+G G FG V+K  +  G TVAVK     +++   +   EV +L ++ H+NLV L+G C E    +LVY F+  G+L  H
Sbjct:  333 INSTGLDRIFTGKEIVKATDNFAKSNLLGFGGFGEVFKGNLDDGTTVAVKRAKLGNEKSIYQIVNEVQILCQVSHKNLVKLLGCCIELEMPVLVYEFVPNGTLFEH 438          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: SRF3_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsis thaliana GN=SRF3 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.408e-11
Identity = 40/101 (39.60%), Postives = 56/101 (55.45%), Query Frame = 3
Query:  198 SGIPEYSYKDLQKATCNFT--TLIGQGAFGPVYKAQMSTGETVAVKVL--ATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            + +  YS   LQ+ T +F    LIG G  G VY+A++  G+  AVK L      +Q + EF   V  +  + H N+V LVGYCAE  Q +LVY + S G+L
Sbjct:  468 TSVKHYSIASLQQYTESFAQENLIGSGMLGSVYRARLPNGKLFAVKKLDKRASEQQQDHEFIELVNNIDMIRHSNIVELVGYCAEHDQRLLVYEYCSNGTL 568          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: IMK2_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase IMK2 OS=Arabidopsis thaliana GN=IMK2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.408e-11
Identity = 35/85 (41.18%), Postives = 53/85 (62.35%), Query Frame = 3
Query:  243 CNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNL-VGYCAEKGQHMLVYVFMSKGSLAS 494
            C    ++G+  +G  YKA +  G  VAVK L   + +G KEF+ EV  LG++ H+NL+ L   Y   KG+ +LV+ +MSKGSL++
Sbjct:  537 CATAEIMGKSTYGTAYKATLEDGNEVAVKRLREKTTKGVKEFEGEVTALGKIRHQNLLALRAYYLGPKGEKLLVFDYMSKGSLSA 621          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: Y1839_ARATH (Probable serine/threonine-protein kinase At1g18390 OS=Arabidopsis thaliana GN=At1g18390 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.839e-11
Identity = 40/103 (38.83%), Postives = 64/103 (62.14%), Query Frame = 3
Query:  201 GIPEYSYKDLQKATCNF--TTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQH--MLVYVFMSKGSLASH 497
            G+  +SY++L++AT NF  +  +G G FG VY  ++  G +VAVK L  ++ +  ++F+ EV +L  L H NLV L G C+ K     +LVY +++ G+LA H
Sbjct:  328 GVHIFSYEELEEATNNFDPSKELGDGGFGTVYYGKLKDGRSVAVKRLYDNNFKRAEQFRNEVEILTGLRHPNLVALFG-CSSKQSRDLLLVYEYVANGTLADH 429          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: WAKLF_ARATH (Wall-associated receptor kinase-like 6 OS=Arabidopsis thaliana GN=WAKL6 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.839e-11
Identity = 38/94 (40.43%), Postives = 57/94 (60.64%), Query Frame = 3
Query:  213 YSYKDLQKATCNFTT--LIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            +S K+L+KAT NF+   ++GQG  G VYK  ++ G  VAVK      +   +EF  EV+LL +++HRN+V L+G C      +LVY ++  G L
Sbjct:  420 FSSKELKKATDNFSMNRVLGQGGQGTVYKGMLAEGRIVAVKRSKVVGEGKMEEFINEVVLLSQINHRNIVKLLGCCLGTEVPVLVYEYIPNGDL 513          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: WAKLB_ARATH (Wall-associated receptor kinase-like 2 OS=Arabidopsis thaliana GN=WAKL2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.839e-11
Identity = 38/94 (40.43%), Postives = 55/94 (58.51%), Query Frame = 3
Query:  213 YSYKDLQKATCNFTT--LIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            +S  +L+KAT NF    ++GQG  G VYK  +  G  VAVK      +   +EF  EV++L +++HRN+V L+G C E    +LVY F+  G L
Sbjct:  404 FSSHELEKATDNFNKNRVLGQGGQGTVYKGMLVDGRIVAVKRSKAVDEDRVEEFINEVVVLAQINHRNIVKLLGCCLETEVPVLVYEFVPNGDL 497          
The following BLAST results are available for this feature:
BLAST of CX308644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
SERK5_ARATH4.838e-1240.21Somatic embryogenesis receptor kinase 5 OS=Arabido... [more]
PTI1_SOLLC4.838e-1232.06Pto-interacting protein 1 OS=Solanum lycopersicum ... [more]
ACCR1_ARATH6.319e-1239.39Serine/threonine-protein kinase-like protein CCR1 ... [more]
WAKLC_ARATH1.078e-1139.36Wall-associated receptor kinase-like 3 OS=Arabidop... [more]
WAKLP_ARATH1.408e-1135.85Wall-associated receptor kinase-like 15 OS=Arabido... [more]
SRF3_ARATH1.408e-1139.60Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsi... [more]
IMK2_ARATH1.408e-1141.18Probably inactive leucine-rich repeat receptor-lik... [more]
Y1839_ARATH1.839e-1138.83Probable serine/threonine-protein kinase At1g18390... [more]
WAKLF_ARATH1.839e-1140.43Wall-associated receptor kinase-like 6 OS=Arabidop... [more]
WAKLB_ARATH1.839e-1140.43Wall-associated receptor kinase-like 2 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionC21002C05Rv AbsLeaSub1 Citrus clementina cDNA clone C21002C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308644 ID=CX308644; Name=CX308644; organism=Citrus clementina; type=EST; length=498bp
ATAGGAAGCGATCCCAGATAGGGAATAGTAGTTCTAGGAGGGCGGCGACA
CTTCCTATTCGTGCAAACGGTGTTGATTCTTGTAGCATATTATCTGATTC
TACTGTTGGTCCGGAGTCACCTGTGAAATCTGGATGGAATGGCAATGGCA
AGTCCATGTGGCTTGAAGGTTTTAAAAGGAGCAATGTGGTGTCAGCATCT
GGAATACCCGAGTATTCTTACAAGGATTTGCAGAAAGCTACATGTAATTT
TACGACATTAATAGGACAAGGTGCATTTGGCCCAGTATACAAAGCTCAGA
TGTCAACTGGTGAAACTGTTGCTGTTAAAGTGCTTGCAACTGATTCTAAG
CAAGGGGAGAAGGAATTCCAAACAGAGGTCATGTTATTAGGACGATTGCA
TCATAGGAACTTGGTGAATTTGGTTGGATATTGTGCAGAAAAGGGCCAAC
ATATGCTTGTGTATGTCTTCATGAGTAAAGGCAGCCTGGCTTCTCATT
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