CX308644

Overview
NameCX308644
Unique NameCX308644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length498
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: Y3545_ARATH (Probable receptor-like protein kinase At3g55450 OS=Arabidopsis thaliana GN=At3g55450 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.717e-17
Identity = 47/116 (40.52%), Postives = 72/116 (62.07%), Query Frame = 3
Query:  186 VVSASGIPEYSYKDLQKATCNFTT--LIGQGAFGPVYKAQM----------STGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLASH 497
            ++S++ +  +S+ +L+ AT NF +  ++G+G FG V++  +          S+G  +AVK L  D  QG +E+ TE+  LG+L H NLV L+GYC E  Q +LVY FM KGSL +H
Sbjct:   40 ILSSTTVKSFSFNELKLATRNFRSDSVVGEGGFGCVFRGWLDETTLTPTKSSSGLVIAVKRLNPDGFQGHREWLTEINYLGQLSHPNLVKLIGYCLEDEQRLLVYEFMHKGSLENH 155          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: Y1357_ARATH (Probable receptor-like protein kinase At1g30570 OS=Arabidopsis thaliana GN=At1g30570 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.717e-17
Identity = 45/113 (39.82%), Postives = 73/113 (64.60%), Query Frame = 3
Query:  168 GFKRSNVVSASGIP-EYSYKDLQKATCNFTT--LIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLASH 497
            G  R N ++AS +  +++  +++ AT NF     IG G FG VY+ ++  G  +A+K     S+QG  EF+TE+++L RL HR+LV+L+G+C E  + +LVY +M+ G+L SH
Sbjct:  492 GSLRLNTLAASTMGRKFTLAEIRAATKNFDDGLAIGVGGFGKVYRGELEDGTLIAIKRATPHSQQGLAEFETEIVMLSRLRHRHLVSLIGFCDEHNEMILVYEYMANGTLRSH 604          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: CRK23_ARATH (Putative cysteine-rich receptor-like protein kinase 23 OS=Arabidopsis thaliana GN=CRK23 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.717e-17
Identity = 45/102 (44.12%), Postives = 66/102 (64.71%), Query Frame = 3
Query:  189 VSASGIPEYSYKDLQKATCNFTTL--IGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            ++ +G  ++ +K +  AT NF  +  +GQG FG VYK    +G  VAVK L+  S QGE+EF+ EV+++ +L HRNLV L+GYC E  + +LVY F+   SL
Sbjct:  488 ITTAGSLQFDFKAIVAATNNFLPINKLGQGGFGEVYKGTFPSGVQVAVKRLSKTSGQGEREFENEVVVVAKLQHRNLVRLLGYCLEGEEKILVYEFVHNKSL 589          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: Y5977_ARATH (Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.929e-17
Identity = 42/117 (35.90%), Postives = 68/117 (58.12%), Query Frame = 3
Query:  144 NGKSMWLEGFKRSNVVSASGIPEYSYKDLQKATCNFTTL--IGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            N  + W  G    +     G   +++++L K T NF+    +G G +G VYK  +  G+ +A+K     S QG  EF+TE+ LL R+HH+N+V L+G+C ++ + MLVY ++  GSL
Sbjct:  599 NPFAKWDAGKNEMDAPQLMGTKAFTFEELSKCTNNFSDANDVGGGGYGQVYKGTLPNGQVIAIKRAQQGSMQGAFEFKTEIELLSRVHHKNVVKLLGFCFDQKEQMLVYEYIPNGSL 715          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: BIK1_ARATH (Serine/threonine-protein kinase BIK1 OS=Arabidopsis thaliana GN=BIK1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.825e-17
Identity = 56/155 (36.13%), Postives = 82/155 (52.90%), Query Frame = 3
Query:  117 SPVKSGWNGNGKSMWLEGFKRSN----------------VVSASGIPEYSYKDLQKATCNFT--TLIGQGAFGPVYKAQMS----------TGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLASH 497
            S VK+    NGKS  L G   S+                ++S++ +  +++ +L+ AT NF   ++IG+G FG V+K  +           TG  +AVK L  +  QG +E+ TE+  LG+L H NLV L+GYC E    +LVY FM KGSL +H
Sbjct:    7 SRVKADIFHNGKSSDLYGLSLSSRKSSSTVAAAQKTEGEILSSTPVKSFTFNELKLATRNFRPDSVIGEGGFGCVFKGWLDESTLTPTKPGTGLVIAVKKLNQEGFQGHREWLTEINYLGQLSHPNLVKLIGYCLEDEHRLLVYEFMQKGSLENH 161          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: CRK30_ARATH (Putative cysteine-rich receptor-like protein kinase 30 OS=Arabidopsis thaliana GN=CRK30 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.995e-17
Identity = 45/102 (44.12%), Postives = 65/102 (63.73%), Query Frame = 3
Query:  189 VSASGIPEYSYKDLQKATCNF--TTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            ++  G  ++  KD++ AT NF  +  IGQG FG VYK  +S G  VAVK L+  S QGE EF+ EV+L+ +L HRNLV L+G+  +  + +LV+ F+   SL
Sbjct:  326 ITTVGYLQFDIKDIEAATSNFLASNKIGQGGFGEVYKGTLSNGTEVAVKRLSRTSDQGELEFKNEVLLVAKLQHRNLVRLLGFALQGEEKILVFEFVPNKSL 427          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: CRK20_ARATH (Putative cysteine-rich receptor-like protein kinase 20 OS=Arabidopsis thaliana GN=CRK20 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 4.995e-17
Identity = 45/102 (44.12%), Postives = 66/102 (64.71%), Query Frame = 3
Query:  189 VSASGIPEYSYKDLQKATCNFTTL--IGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            ++ +G  ++ +K +  AT  F  +  +GQG FG VYK    +G  VAVK L+ +S QGEKEF+ EV+++ +L HRNLV L+GYC E  + +LVY F+   SL
Sbjct:  324 ITTAGSLQFDFKAIVAATDIFLPINKLGQGGFGEVYKGTFPSGVQVAVKRLSKNSGQGEKEFENEVVVVAKLQHRNLVKLLGYCLEGEEKILVYEFVPNKSL 425          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: CRK12_ARATH (Putative cysteine-rich receptor-like protein kinase 12 OS=Arabidopsis thaliana GN=CRK12 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 4.995e-17
Identity = 45/95 (47.37%), Postives = 62/95 (65.26%), Query Frame = 3
Query:  210 EYSYKDLQKATCNF--TTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            +  +K ++ AT NF  T  +GQG FG VYK  +  G  VAVK L+  S+QG +EF+ EV+L+ +L HRNLV L+GYC E  + +LVY F+   SL
Sbjct:  354 QLDFKTIEVATENFAKTNKLGQGGFGEVYKGTLVNGTEVAVKRLSKTSEQGAQEFKNEVVLVAKLQHRNLVKLLGYCLEPEEKILVYEFVPNKSL 448          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: CRK11_ARATH (Cysteine-rich receptor-like protein kinase 11 OS=Arabidopsis thaliana GN=CRK11 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 4.995e-17
Identity = 46/115 (40.00%), Postives = 71/115 (61.74%), Query Frame = 3
Query:  165 EGFKRSNVVSASGIPE-----YSYKDLQKATCNFTTL--IGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            + ++R+   S S I       Y +K ++ AT  F+T   +G+G FG VYK ++S G  VAVK L+  S QG +EF+ E +L+ +L HRNLV L+G+C E+ + +L+Y F+   SL
Sbjct:  317 KSYQRTKTESESDISTTDSLVYDFKTIEAATNKFSTSNKLGEGGFGAVYKGKLSNGTDVAVKRLSKKSGQGTREFRNEAVLVTKLQHRNLVRLLGFCLEREEQILIYEFVHNKSL 431          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: Y5389_ARATH (Probable receptor-like protein kinase At5g38990 OS=Arabidopsis thaliana GN=At5g38990 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.524e-17
Identity = 55/139 (39.57%), Postives = 78/139 (56.12%), Query Frame = 3
Query:  114 ESPVKSGWNGNGKSMW---LEGFKRSNVVSASGIPE-----YSYKDLQKATCNFTT--LIGQGAFGPVYKAQMSTGET-VAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLASH 497
            ES V +    +  S W   L G   +N  SAS +P      +S  +++ AT +F    +IG G FG VYK ++  G T VAVK L   S QG KEF TE+ +L +L H +LV+L+GYC +  + +LVY +M  G+L  H
Sbjct:  472 ESSVDTTNKPSTNSSWGPLLHGTGSTNTKSASSLPSDLCRRFSIYEIKSATNDFEEKLIIGVGGFGSVYKGRIDGGATLVAVKRLEITSNQGAKEFDTELEMLSKLRHVHLVSLIGYCDDDNEMVLVYEYMPHGTLKDH 610          
The following BLAST results are available for this feature:
BLAST of CX308644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
Y3545_ARATH1.717e-1740.52Probable receptor-like protein kinase At3g55450 OS... [more]
Y1357_ARATH1.717e-1739.82Probable receptor-like protein kinase At1g30570 OS... [more]
CRK23_ARATH1.717e-1744.12Putative cysteine-rich receptor-like protein kinas... [more]
Y5977_ARATH2.929e-1735.90Probable leucine-rich repeat receptor-like protein... [more]
BIK1_ARATH3.825e-1736.13Serine/threonine-protein kinase BIK1 OS=Arabidopsi... [more]
CRK30_ARATH4.995e-1744.12Putative cysteine-rich receptor-like protein kinas... [more]
CRK20_ARATH4.995e-1744.12Putative cysteine-rich receptor-like protein kinas... [more]
CRK12_ARATH4.995e-1747.37Putative cysteine-rich receptor-like protein kinas... [more]
CRK11_ARATH4.995e-1740.00Cysteine-rich receptor-like protein kinase 11 OS=A... [more]
Y5389_ARATH6.524e-1739.57Probable receptor-like protein kinase At5g38990 OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC21002C05Rv AbsLeaSub1 Citrus clementina cDNA clone C21002C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308644 ID=CX308644; Name=CX308644; organism=Citrus clementina; type=EST; length=498bp
ATAGGAAGCGATCCCAGATAGGGAATAGTAGTTCTAGGAGGGCGGCGACA
CTTCCTATTCGTGCAAACGGTGTTGATTCTTGTAGCATATTATCTGATTC
TACTGTTGGTCCGGAGTCACCTGTGAAATCTGGATGGAATGGCAATGGCA
AGTCCATGTGGCTTGAAGGTTTTAAAAGGAGCAATGTGGTGTCAGCATCT
GGAATACCCGAGTATTCTTACAAGGATTTGCAGAAAGCTACATGTAATTT
TACGACATTAATAGGACAAGGTGCATTTGGCCCAGTATACAAAGCTCAGA
TGTCAACTGGTGAAACTGTTGCTGTTAAAGTGCTTGCAACTGATTCTAAG
CAAGGGGAGAAGGAATTCCAAACAGAGGTCATGTTATTAGGACGATTGCA
TCATAGGAACTTGGTGAATTTGGTTGGATATTGTGCAGAAAAGGGCCAAC
ATATGCTTGTGTATGTCTTCATGAGTAAAGGCAGCCTGGCTTCTCATT
back to top