CX308644

Overview
NameCX308644
Unique NameCX308644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length498
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: BRI1_ARATH (Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.229e-16
Identity = 44/93 (47.31%), Postives = 59/93 (63.44%), Query Frame = 3
Query:  216 SYKDLQKATCNF--TTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            ++ DL +AT  F   +LIG G FG VYKA +  G  VA+K L   S QG++EF  E+  +G++ HRNLV L+GYC    + +LVY FM  GSL
Sbjct:  872 TFADLLQATNGFHNDSLIGSGGFGDVYKAILKDGSAVAIKKLIHVSGQGDREFMAEMETIGKIKHRNLVPLLGYCKVGDERLLVYEFMKYGSL 964          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: Y5614_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 5.523e-16
Identity = 39/94 (41.49%), Postives = 62/94 (65.96%), Query Frame = 3
Query:  213 YSYKDLQKATCNF--TTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            ++Y +L+ AT +F  +  +G+G FGPVYK +++ G  VAVK+L+  S+QG+ +F  E++ +  + HRNLV L G C E    +LVY ++  GSL
Sbjct:  681 FTYSELKSATQDFDPSNKLGEGGFGPVYKGKLNDGREVAVKLLSVGSRQGKGQFVAEIVAISAVQHRNLVKLYGCCYEGEHRLLVYEYLPNGSL 774          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: Y1561_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Arabidopsis thaliana GN=At1g56130 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 5.523e-16
Identity = 40/94 (42.55%), Postives = 61/94 (64.89%), Query Frame = 3
Query:  213 YSYKDLQKATCNF--TTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            ++Y +L+ AT +F  +  +G+G FGPVYK  ++ G  VAVK+L+  S+QG+ +F  E++ +  + HRNLV L G C E    MLVY ++  GSL
Sbjct:  682 FTYSELKSATQDFDPSNKLGEGGFGPVYKGNLNDGRVVAVKLLSVGSRQGKGQFVAEIVAISSVLHRNLVKLYGCCFEGEHRMLVYEYLPNGSL 775          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: CRK37_ARATH (Cysteine-rich receptor-like protein kinase 37 OS=Arabidopsis thaliana GN=CRK37 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.523e-16
Identity = 44/86 (51.16%), Postives = 57/86 (66.28%), Query Frame = 3
Query:  237 ATCNFT--TLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            AT NF+    +GQG FG VYK  + +G+ +AVK L   S QG  EF+ EV+LL RL HRNLV L+G+C EK + +LVY F+   SL
Sbjct:  341 ATNNFSLENKLGQGGFGSVYKGILPSGQEIAVKRLRKGSGQGGMEFKNEVLLLTRLQHRNLVKLLGFCNEKDEEILVYEFVPNSSL 426          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: CRK29_ARATH (Cysteine-rich receptor-like protein kinase 29 OS=Arabidopsis thaliana GN=CRK29 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.523e-16
Identity = 40/92 (43.48%), Postives = 62/92 (67.39%), Query Frame = 3
Query:  219 YKDLQKATCNFTTL--IGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            ++ L+ AT NF++   +G+G FG VYK     G+ +AVK L+ +S QG+ EF+ E++LL +L HRNLV L+G+C +  + +LVY F+   SL
Sbjct:  347 FETLKTATDNFSSENELGRGGFGSVYKGVFPQGQEIAVKRLSGNSGQGDNEFKNEILLLAKLQHRNLVRLIGFCIQGEERLLVYEFIKNASL 438          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: PSKR1_DAUCA (Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.213e-16
Identity = 44/95 (46.32%), Postives = 59/95 (62.11%), Query Frame = 3
Query:  210 EYSYKDLQKATCNFT--TLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            E S  D+ K+T +F    +IG G FG VYKA +  G  VA+K L+ D+ Q ++EFQ EV  L R  H NLV+L+GYC  K   +L+Y +M  GSL
Sbjct:  730 ELSLDDILKSTSSFNQANIIGCGGFGLVYKATLPDGTKVAIKRLSGDTGQMDREFQAEVETLSRAQHPNLVHLLGYCNYKNDKLLIYSYMDNGSL 824          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: CRK31_ARATH (Putative cysteine-rich receptor-like protein kinase 31 OS=Arabidopsis thaliana GN=CRK31 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.213e-16
Identity = 39/95 (41.05%), Postives = 64/95 (67.37%), Query Frame = 3
Query:  210 EYSYKDLQKATCNFT--TLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            ++ +  ++ AT NF+    +GQG FG VYK  +     +AVK L+++S QG +EF+ EV+++ +L H+NLV L+G+C E+ + +LVY F+S  SL
Sbjct:  326 QFDFTTIEVATDNFSRNNKLGQGGFGEVYKGMLPNETEIAVKRLSSNSGQGTQEFKNEVVIVAKLQHKNLVRLLGFCIERDEQILVYEFVSNKSL 420          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: CRK26_ARATH (Cysteine-rich receptor-like protein kinase 26 OS=Arabidopsis thaliana GN=CRK26 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.213e-16
Identity = 43/107 (40.19%), Postives = 67/107 (62.62%), Query Frame = 3
Query:  174 KRSNVVSASGIPEYSYKDLQKATCNFT--TLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            K  N   ++   ++ +  LQ AT +F+    +G+G FG VYK  +S G+ +AVK L+ +++QGE EF+ E +L+ +L HRNLV L+GY  E  + +LVY F+   SL
Sbjct:  319 KHENENISTDSMKFDFSVLQDATSHFSLENKLGEGGFGAVYKGVLSDGQKIAVKRLSKNAQQGETEFKNEFLLVAKLQHRNLVKLLGYSIEGTERLLVYEFLPHTSL 425          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: LRKA1_ARATH (Lectin-domain containing receptor kinase A4.1 OS=Arabidopsis thaliana GN=LECRKA4.1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 9.421e-16
Identity = 41/94 (43.62%), Postives = 59/94 (62.77%), Query Frame = 3
Query:  219 YKDLQKATCNF--TTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLAS 494
            Y+DL  AT  F  T +IG G FG V+K ++   + +AVK +   S+QG +EF  E+  LG+L H+NLVNL G+C  K   +L+Y ++  GSL S
Sbjct:  357 YRDLYVATDGFKKTGIIGTGGFGTVFKGKLPNSDPIAVKKIIPSSRQGVREFVAEIESLGKLRHKNLVNLQGWCKHKNDLLLIYDYIPNGSLDS 450          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: BRL1_ARATH (Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.230e-15
Identity = 41/93 (44.09%), Postives = 60/93 (64.52%), Query Frame = 3
Query:  216 SYKDLQKATCNFT--TLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            ++  L +AT  F+  T++G G FG VYKAQ+  G  VA+K L   + QG++EF  E+  +G++ HRNLV L+GYC    + +LVY +M  GSL
Sbjct:  848 TFAHLLEATNGFSAETMVGSGGFGEVYKAQLRDGSVVAIKKLIRITGQGDREFMAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKWGSL 940          
The following BLAST results are available for this feature:
BLAST of CX308644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
BRI1_ARATH4.229e-1647.31Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidops... [more]
Y5614_ARATH5.523e-1641.49Probable LRR receptor-like serine/threonine-protei... [more]
Y1561_ARATH5.523e-1642.55Probable LRR receptor-like serine/threonine-protei... [more]
CRK37_ARATH5.523e-1651.16Cysteine-rich receptor-like protein kinase 37 OS=A... [more]
CRK29_ARATH5.523e-1643.48Cysteine-rich receptor-like protein kinase 29 OS=A... [more]
PSKR1_DAUCA7.213e-1646.32Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR... [more]
CRK31_ARATH7.213e-1641.05Putative cysteine-rich receptor-like protein kinas... [more]
CRK26_ARATH7.213e-1640.19Cysteine-rich receptor-like protein kinase 26 OS=A... [more]
LRKA1_ARATH9.421e-1643.62Lectin-domain containing receptor kinase A4.1 OS=A... [more]
BRL1_ARATH1.230e-1544.09Serine/threonine-protein kinase BRI1-like 1 OS=Ara... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC21002C05Rv AbsLeaSub1 Citrus clementina cDNA clone C21002C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308644 ID=CX308644; Name=CX308644; organism=Citrus clementina; type=EST; length=498bp
ATAGGAAGCGATCCCAGATAGGGAATAGTAGTTCTAGGAGGGCGGCGACA
CTTCCTATTCGTGCAAACGGTGTTGATTCTTGTAGCATATTATCTGATTC
TACTGTTGGTCCGGAGTCACCTGTGAAATCTGGATGGAATGGCAATGGCA
AGTCCATGTGGCTTGAAGGTTTTAAAAGGAGCAATGTGGTGTCAGCATCT
GGAATACCCGAGTATTCTTACAAGGATTTGCAGAAAGCTACATGTAATTT
TACGACATTAATAGGACAAGGTGCATTTGGCCCAGTATACAAAGCTCAGA
TGTCAACTGGTGAAACTGTTGCTGTTAAAGTGCTTGCAACTGATTCTAAG
CAAGGGGAGAAGGAATTCCAAACAGAGGTCATGTTATTAGGACGATTGCA
TCATAGGAACTTGGTGAATTTGGTTGGATATTGTGCAGAAAAGGGCCAAC
ATATGCTTGTGTATGTCTTCATGAGTAAAGGCAGCCTGGCTTCTCATT
back to top