CX308727

Overview
NameCX308727
Unique NameCX308727
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length490
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308727 vs. ExPASy Swiss-Prot
Match: PPM1K_HUMAN (Protein phosphatase 1K, mitochondrial OS=Homo sapiens GN=PPM1K PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.750e-14
Identity = 41/92 (44.57%), Postives = 62/92 (67.39%), Query Frame = 3
Query:  210 ELTRDHHPDREDERYRVEAAGGYVLQWG--GVSRVNGQLAVSRAIGDLSYKSYGVISVPEVTDWQSLTANDSYLVAASDGVFEKLSLQDICD 479
            +LT DH P+R+DE+ R++  GG+V  W   G   VNG+LA++R+IGDL  K+ GVI+ PE    +   A+DS+LV  +DG+   ++ Q+ICD
Sbjct:  221 KLTIDHTPERKDEKERIKKCGGFVA-WNSLGQPHVNGRLAMTRSIGDLDLKTSGVIAEPETKRIKLHHADDSFLVLTTDGINFMVNSQEICD 311          
BLAST of CX308727 vs. ExPASy Swiss-Prot
Match: P2C07_ARATH (Protein phosphatase 2C 7 OS=Arabidopsis thaliana GN=HAB2 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 4.897e-14
Identity = 45/89 (50.56%), Postives = 59/89 (66.29%), Query Frame = 3
Query:  213 LTRDHHPDREDERYRVEAAGGYVLQWGGVSRVNGQLAVSRAIGDLSYKSYGVISVPEVTDWQSLTANDSYLVAASDGVFEKLSLQDICD 479
            L+ DH PDREDE  R+E AGG V+QW G +RV+G LA+SR+IGD  Y    VI  PEVT +      D  L+ ASDG+++ +S Q+ CD
Sbjct:  360 LSVDHKPDREDEYARIEKAGGKVIQWQG-ARVSGVLAMSRSIGD-QYLEPFVIPDPEVT-FMPRAREDECLILASDGLWDVMSNQEACD 445          
BLAST of CX308727 vs. ExPASy Swiss-Prot
Match: PPM1K_BOVIN (Protein phosphatase 1K, mitochondrial OS=Bos taurus GN=PPM1K PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.396e-14
Identity = 40/92 (43.48%), Postives = 62/92 (67.39%), Query Frame = 3
Query:  210 ELTRDHHPDREDERYRVEAAGGYVLQWG--GVSRVNGQLAVSRAIGDLSYKSYGVISVPEVTDWQSLTANDSYLVAASDGVFEKLSLQDICD 479
            +LT DH P+R+DE+ R++  GG+V  W   G   VNG+LA++R++GDL  K+ GVI+ PE    +   A+DS+LV  +DG+   ++ Q+ICD
Sbjct:  221 KLTIDHTPERKDEKERIKKCGGFVA-WNSLGQPHVNGRLAMTRSLGDLDLKTSGVIAEPETKRIKLHHADDSFLVLTTDGINFMVNSQEICD 311          
BLAST of CX308727 vs. ExPASy Swiss-Prot
Match: P2C77_ARATH (Protein phosphatase 2C 77 OS=Arabidopsis thaliana GN=ABI2 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.396e-14
Identity = 42/90 (46.67%), Postives = 63/90 (70.00%), Query Frame = 3
Query:  213 LTRDHHPDREDERYRVEAAGGYVLQWGGVSRVNGQLAVSRAIGDLSYKSYGVISVPEVTDWQSLTANDSYLVAASDGVFEKLSLQDICDV 482
            L+ DH PDR+DE  R+EAAGG V++W G +RV G LA+SR+IGD  Y    VI  PEVT  + +  +D  L+ ASDG+++ ++ +++CD+
Sbjct:  265 LSVDHKPDRDDEAARIEAAGGKVIRWNG-ARVFGVLAMSRSIGD-RYLKPSVIPDPEVTSVRRVKEDDC-LILASDGLWDVMTNEEVCDL 351          
BLAST of CX308727 vs. ExPASy Swiss-Prot
Match: P2C56_ARATH (Protein phosphatase 2C 56 OS=Arabidopsis thaliana GN=ABI1 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 6.396e-14
Identity = 44/94 (46.81%), Postives = 63/94 (67.02%), Query Frame = 3
Query:  201 TVKELTRDHHPDREDERYRVEAAGGYVLQWGGVSRVNGQLAVSRAIGDLSYKSYGVISVPEVTDWQSLTANDSYLVAASDGVFEKLSLQDICDV 482
            T   L+ DH PDREDE  R+EAAGG V+QW G +RV G LA+SR+IGD  Y    +I  PEVT  + +  +D  L+ ASDGV++ ++ ++ C++
Sbjct:  271 TALPLSVDHKPDREDEAARIEAAGGKVIQWNG-ARVFGVLAMSRSIGD-RYLKPSIIPDPEVTAVKRVKEDDC-LILASDGVWDVMTDEEACEM 361          
BLAST of CX308727 vs. ExPASy Swiss-Prot
Match: P2C10_ORYSJ (Probable protein phosphatase 2C 10 OS=Oryza sativa subsp. japonica GN=Os02g0149800 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.396e-14
Identity = 52/156 (33.33%), Postives = 81/156 (51.92%), Query Frame = 3
Query:   15 QILVANIGDSKALLCSEKFQSPAEAKATLLRLYRKRRDNNAISTSQGYNYLKSTVSNGLAHFTVKELTRDHHPDREDERYRVEAAGGYVLQWGGVSRVNGQLAVSRAIGDLSYKSYGVISVPEVTDWQSLTANDSYLVAASDGVFEKLSLQDICDV 482
            ++LVAN+GDS+A++C                     R  +AI+ S                       RDH PD+ DER R+E AGG+V+ W G  RV G LAVSRA GD   K Y V++ PE+ + + + ++  +L+ ASDG+++ +S ++  D+
Sbjct:  186 RLLVANVGDSRAVVC---------------------RGGDAIAVS-----------------------RDHKPDQSDERQRIEDAGGFVM-WAGTWRVGGVLAVSRAFGDKLLKQY-VVADPEIKE-EIVDSSLEFLILASDGLWDVVSNKEAVDM 294          
BLAST of CX308727 vs. ExPASy Swiss-Prot
Match: P2C78_ARATH (Probable protein phosphatase 2C 78 OS=Arabidopsis thaliana GN=At5g59220 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.354e-14
Identity = 58/156 (37.18%), Postives = 77/156 (49.36%), Query Frame = 3
Query:   15 QILVANIGDSKALLCSEKFQSPAEAKATLLRLYRKRRDNNAISTSQGYNYLKSTVSNGLAHFTVKELTRDHHPDREDERYRVEAAGGYVLQWGGVSRVNGQLAVSRAIGDLSYKSYGVISVPEVTDWQSLTANDSYLVAASDGVFEKLSLQDICDV 482
            +I+VAN GDS+A+LC                     R+  AI+                       L+ DH PDR DE  R++AAGG V+ W G  RV G LA+SRAIGD   K Y VIS PEVT       +D +L+ ASDG+++ +S +  C V
Sbjct:  233 KIIVANCGDSRAVLC---------------------RNGKAIA-----------------------LSSDHKPDRPDELDRIQAAGGRVIYWDG-PRVLGVLAMSRAIGDNYLKPY-VISRPEVTVTDRANGDD-FLILASDGLWDVVSNETACSV 341          
BLAST of CX308727 vs. ExPASy Swiss-Prot
Match: PPM1K_XENLA (Protein phosphatase 1K, mitochondrial OS=Xenopus laevis GN=ppm1k PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.091e-13
Identity = 39/93 (41.94%), Postives = 62/93 (66.67%), Query Frame = 3
Query:  210 ELTRDHHPDREDERYRVEAAGGYVLQWG--GVSRVNGQLAVSRAIGDLSYKSYGVISVPEVTDWQSLTANDSYLVAASDGVFEKLSLQDICDV 482
            +LT DH P+R++E+ R++ +GG+V  W   G   VNG+LA++R+IGDL  KS GVI+ PE    +    +D +LV  +DG+   ++ Q+ICD+
Sbjct:  222 KLTIDHTPERKEEKLRIKKSGGFVT-WNSLGQPNVNGRLAMTRSIGDLDLKSMGVIAEPETKRVKLQHTDDGFLVLTTDGINFIVNSQEICDI 313          
BLAST of CX308727 vs. ExPASy Swiss-Prot
Match: P2C71_ARATH (Probable protein phosphatase 2C 71 OS=Arabidopsis thaliana GN=At5g24940 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.861e-13
Identity = 51/152 (33.55%), Postives = 76/152 (50.00%), Query Frame = 3
Query:   15 QILVANIGDSKALLCSEKFQSPAEAKATLLRLYRKRRDNNAISTSQGYNYLKSTVSNGLAHFTVKELTRDHHPDREDERYRVEAAGGYVLQWGGVSRVNGQLAVSRAIGDLSYKSYGVISVPEVTDWQSLTANDSYLVAASDGVFEKLSLQD 470
            ++LVAN+GDS+A++C                     R  NA + S                       RDH PD+ DER R+E AGG+V+ W G  RV G LAVSRA GD   K Y V++ PE+ + + +  +  +L+ ASDG+++  S ++
Sbjct:  137 RLLVANVGDSRAVIC---------------------RGGNAFAVS-----------------------RDHKPDQSDERERIENAGGFVM-WAGTWRVGGVLAVSRAFGDRLLKQY-VVADPEIQE-EKIDDSLEFLILASDGLWDVFSNEE 241          
BLAST of CX308727 vs. ExPASy Swiss-Prot
Match: P2C08_ORYSJ (Probable protein phosphatase 2C 8 OS=Oryza sativa subsp. japonica GN=Os01g0656200 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.431e-13
Identity = 44/90 (48.89%), Postives = 56/90 (62.22%), Query Frame = 3
Query:  213 LTRDHHPDREDERYRVEAAGGYVLQWGGVSRVNGQLAVSRAIGDLSYKSYGVISVPEVTDWQSLTANDSYLVAASDGVFEKLSLQDICDV 482
            L+ DH PDR DE  RVEAAGG V+ W G  R+ G LA SR+IGD   K Y VI+ PEVT     T  D +L+ ASDG+++ +S    C +
Sbjct:  253 LSSDHKPDRPDEMERVEAAGGRVINWNGY-RILGVLATSRSIGDYYLKPY-VIAEPEVT-VMDRTDKDEFLILASDGLWDVVSNDVACKI 339          
The following BLAST results are available for this feature:
BLAST of CX308727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
PPM1K_HUMAN3.750e-1444.57Protein phosphatase 1K, mitochondrial OS=Homo sapi... [more]
P2C07_ARATH4.897e-1450.56Protein phosphatase 2C 7 OS=Arabidopsis thaliana G... [more]
PPM1K_BOVIN6.396e-1443.48Protein phosphatase 1K, mitochondrial OS=Bos tauru... [more]
P2C77_ARATH6.396e-1446.67Protein phosphatase 2C 77 OS=Arabidopsis thaliana ... [more]
P2C56_ARATH6.396e-1446.81Protein phosphatase 2C 56 OS=Arabidopsis thaliana ... [more]
P2C10_ORYSJ6.396e-1433.33Probable protein phosphatase 2C 10 OS=Oryza sativa... [more]
P2C78_ARATH8.354e-1437.18Probable protein phosphatase 2C 78 OS=Arabidopsis ... [more]
PPM1K_XENLA1.091e-1341.94Protein phosphatase 1K, mitochondrial OS=Xenopus l... [more]
P2C71_ARATH1.861e-1333.55Probable protein phosphatase 2C 71 OS=Arabidopsis ... [more]
P2C08_ORYSJ2.431e-1348.89Probable protein phosphatase 2C 8 OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank descriptionC21003B06Rv AbsLeaSub1 Citrus clementina cDNA clone C21003B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308727 ID=CX308727; Name=CX308727; organism=Citrus clementina; type=EST; length=490bp
TGATAGCAGAGGGCCAAATTTTAGTTGCCAACATTGGAGATTCAAAAGCT
CTTCTGTGCTCTGAAAAATTTCAGTCTCCTGCTGAGGCCAAAGCTACTTT
ATTAAGGTTATACAGGAAGCGAAGGGATAATAATGCTATTTCAACTTCAC
AAGGTTATAATTACTTAAAATCCACAGTATCCAATGGACTTGCACATTTT
ACAGTCAAGGAACTGACAAGAGATCATCATCCGGATAGGGAAGATGAAAG
GTATCGAGTGGAGGCTGCCGGTGGTTATGTTCTTCAGTGGGGTGGTGTTT
CACGAGTAAATGGCCAGCTAGCTGTTTCCCGAGCTATTGGAGATTTATCT
TATAAAAGTTATGGTGTTATATCTGTGCCGGAGGTGACAGATTGGCAATC
TCTGACTGCCAATGATAGTTATCTGGTAGCTGCATCTGATGGTGTGTTTG
AAAAGCTGAGTTTGCAAGACATTTGTGATGTATTTTGGGA
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