CX308743

Overview
NameCX308743
Unique NameCX308743
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length355
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15055 contig Ccv1_Contig15055:676..1030. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB2_YEAST (Thioredoxin reductase 2, mitochondrial OS=Saccharomyces cerevisiae GN=TRR2 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.016e-23
Identity = 60/116 (51.72%), Postives = 75/116 (64.66%), Query Frame = 1
Query:    4 SKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQD 351
            SKVYI+ R+D FRAS IMQ R   NP I V++N+V LEA G+               +   +DL+V+GLF+AIGH PAT  + GQ+D    GYI T PG++ TSVPG FAAGDVQD
Sbjct:  201 SKVYILVRKDHFRASVIMQRRIEKNPNIIVLFNTVALEAKGDGKLLNMLRIKNTK--SNVENDLEVNGLFYAIGHSPATDIVKGQVDEEETGYIKTVPGSSLTSVPGFFAAGDVQD 314          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_DICDI (Thioredoxin reductase OS=Dictyostelium discoideum GN=trrA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.860e-23
Identity = 56/117 (47.86%), Postives = 75/117 (64.10%), Query Frame = 1
Query:    4 SKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK 354
            SKV ++ RR+  RASK MQ +  +NPKI+V+W++ ++E  GE               T   S+L   GLF+AIGH P + FL+GQL+    GYIIT+PG+T T+V GVFA GDVQDK
Sbjct:  180 SKVTLLVRRNVMRASKAMQQKVFSNPKIEVLWDTTLVEIKGEKSVTSVGIYNSE---TKVSSNLDAQGLFYAIGHTPNSAFLNGQLNTDETGYIITQPGSTKTNVEGVFACGDVQDK 293          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_STRCO (Thioredoxin reductase OS=Streptomyces coelicolor GN=trxB PE=3 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 1.467e-22
Identity = 54/114 (47.37%), Postives = 70/114 (61.40%), Query Frame = 1
Query:   10 VYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQD 351
            V I+HRRD+ RASK MQ RA  +PKI  +W+S V E  G+               TG++SDL V+GLF AIGH+P T+   GQLDL  +GY+     +T T++ GVF AGDV D
Sbjct:  172 VTIVHRRDTLRASKAMQERAFADPKISFVWDSEVAEVQGDQKLAGLKLRNVK---TGELSDLPVTGLFIAIGHDPRTELFKGQLDLDPEGYLKVDAPSTRTNLTGVFGAGDVVD 282          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_STRCL (Thioredoxin reductase OS=Streptomyces clavuligerus GN=trxB PE=1 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 7.279e-22
Identity = 53/114 (46.49%), Postives = 68/114 (59.65%), Query Frame = 1
Query:   10 VYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQD 351
            V I+HRRDS RASK MQ+RA  +PKI   WNS V   +GE               TG+  +L  +GLF A+GH+P T+   GQLDL  +GY+     +T T++ GVFAAGDV D
Sbjct:  172 VTIVHRRDSLRASKAMQDRAFADPKISFAWNSEVATIHGEQKLTGLTLRDTK---TGETRELAATGLFIAVGHDPRTELFKGQLDLDDEGYLKVASPSTRTNLTGVFAAGDVVD 282          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_PENCH (Thioredoxin reductase OS=Penicillium chrysogenum GN=TRR1 PE=1 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 9.507e-22
Identity = 52/119 (43.70%), Postives = 73/119 (61.34%), Query Frame = 1
Query:    1 GSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDL-KVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK 354
            GS V ++ R+D  RAS IM +R L +PK  V +N+V  E  GE                    ++ + +GLF+A+GH+PA+  + GQ++L  +GYIITKPGT+ T+V GVFA GDVQDK
Sbjct:  180 GSSVTVLVRKDKLRASNIMADRLLAHPKCKVRFNTVATEVIGENKPNGLMTHLRVKDVLSNAEEVVEANGLFYAVGHDPASGLVKGQVELDDEGYIITKPGTSFTNVEGVFACGDVQDK 298          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_SPIBA (Thioredoxin reductase (Fragment) OS=Spironucleus barkhanus GN=TRXB PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.242e-21
Identity = 53/116 (45.69%), Postives = 72/116 (62.07%), Query Frame = 1
Query:    4 SKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQD 351
            SKVY+I RRD+FRAS  M  R  +NPKI++I+NS V E  GE               +G ++ LKV  LF+ IGH P T+ L GQ+ +  +GYI+ +  T +T+VPG+FAAGD  D
Sbjct:  163 SKVYLILRRDAFRASAAMVQRVKSNPKIEIIYNSAVQEIKGETRVNQILVKNLK---SGDITPLKVEALFWCIGHTPQTRLLKGQVKMSENGYILVENQTQYTNVPGIFAAGDCCD 275          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_MYCSM (Thioredoxin reductase OS=Mycobacterium smegmatis GN=trxB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.285e-18
Identity = 49/114 (42.98%), Postives = 70/114 (61.40%), Query Frame = 1
Query:   10 VYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQD 351
            V +IHRRD FRASKIM  RA  N KI  + N+ + +  G+               TG+ S L V+G+F AIGH+P ++ + GQ++L  +GY+  +  TT+TS+ GVFAAGD+ D
Sbjct:  173 VTLIHRRDEFRASKIMLERARANEKITFLTNTEITQIEGDPKVTGVRLRDTV---TGEESKLDVTGVFVAIGHDPRSELVRGQVELDDEGYVKVQGRTTYTSLDGVFAAGDLVD 283          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_MYCLE (Bifunctional thioredoxin reductase/thioredoxin OS=Mycobacterium leprae GN=trxB/A PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.192e-18
Identity = 50/115 (43.48%), Postives = 66/115 (57.39%), Query Frame = 1
Query:   10 VYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK 354
            V ++HRRD FRASKIM  RA  N KI  I N  V+   G                TG+ + L V+G+F AIGHEP +  +   +D+  DGY++ K  TT TS+ GVFAAGD+ D+
Sbjct:  178 VTLVHRRDEFRASKIMLGRARNNDKIKFITNHTVVAVNG---YTTVTGLRLRNTTTGEETTLVVTGVFVAIGHEPRSSLVSDVVDIDPDGYVLVKGRTTSTSMDGVFAAGDLVDR 289          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_MYCTU (Thioredoxin reductase OS=Mycobacterium tuberculosis GN=trxB PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 3.738e-18
Identity = 49/115 (42.61%), Postives = 68/115 (59.13%), Query Frame = 1
Query:   10 VYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK 354
            V ++HRRD FRASKIM +RA  N KI  + N  V+   G+               TG  + L V+G+F AIGHEP +  +   +D+  DGY++ +  TT TS+PGVFAAGD+ D+
Sbjct:  181 VTLVHRRDEFRASKIMLDRARNNDKIRFLTNHTVVAVDGDTTVTGLRVRDTN---TGAETTLPVTGVFVAIGHEPRSGLVREAIDVDPDGYVLVQGRTTSTSLPGVFAAGDLVDR 292          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_HAEIN (Thioredoxin reductase OS=Haemophilus influenzae GN=trxB PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.268e-15
Identity = 53/123 (43.09%), Postives = 70/123 (56.91%), Query Frame = 1
Query:    4 SKVYIIHRRDSFRASKIMQNRA---LTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPG----TTHTSVPGVFAAGDVQD 351
            S V++IHRRDSFRA KI+ +R    +   KI +  +  + E  G+               TG+  +LK+ GLF AIGH P T+   GQL+L ++GYI+ K G     T TSV GVFAAGDV D
Sbjct:  170 STVHLIHRRDSFRAEKILIDRLYKKVEEGKIVLHTDRTLDEVLGDNMGVTGLRLANTK--TGEKEELKLDGLFVAIGHSPNTEIFQGQLEL-NNGYIVVKSGLDGNATATSVEGVFAAGDVMD 289          
The following BLAST results are available for this feature:
BLAST of CX308743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
TRXB2_YEAST1.016e-2351.72Thioredoxin reductase 2, mitochondrial OS=Saccharo... [more]
TRXB_DICDI3.860e-2347.86Thioredoxin reductase OS=Dictyostelium discoideum ... [more]
TRXB_STRCO1.467e-2247.37Thioredoxin reductase OS=Streptomyces coelicolor G... [more]
TRXB_STRCL7.279e-2246.49Thioredoxin reductase OS=Streptomyces clavuligerus... [more]
TRXB_PENCH9.507e-2243.70Thioredoxin reductase OS=Penicillium chrysogenum G... [more]
TRXB_SPIBA1.242e-2145.69Thioredoxin reductase (Fragment) OS=Spironucleus b... [more]
TRXB_MYCSM1.285e-1842.98Thioredoxin reductase OS=Mycobacterium smegmatis G... [more]
TRXB_MYCLE2.192e-1843.48Bifunctional thioredoxin reductase/thioredoxin OS=... [more]
TRXB_MYCTU3.738e-1842.61Thioredoxin reductase OS=Mycobacterium tuberculosi... [more]
TRXB_HAEIN2.268e-1543.09Thioredoxin reductase OS=Haemophilus influenzae GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC21003C11Rv AbsLeaSub1 Citrus clementina cDNA clone C21003C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308743 ID=CX308743; Name=CX308743; organism=Citrus clementina; type=EST; length=355bp
GGATCAAAAGTTTATATAATTCATAGGAGGGATAGTTTTAGAGCTTCGAA
GATTATGCAAAACAGGGCACTTACGAACCCTAAGATTGATGTGATTTGGA
ATTCGGTTGTTTTAGAGGCTTATGGAGAAGGGGATAAGAAGGTTCTGGGA
GGATTGAAGGTGAAGAATTTGGTGACTGGACAGGTTTCTGATTTGAAGGT
GTCTGGCTTGTTCTTTGCCATTGGACACGAGCCTGCTACTAAGTTTTTGG
ATGGTCAGTTGGACCTGCATTCTGATGGTTATATTATTACCAAACCTGGG
ACTACACACACTAGTGTCCCTGGAGTGTTTGCTGCTGGAGATGTTCAGGA
TAAGA
back to top