CX308743

Overview
NameCX308743
Unique NameCX308743
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length355
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15055 contig Ccv1_Contig15055:676..1030. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_COXBU (Thioredoxin reductase OS=Coxiella burnetii GN=trxB PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.619e-15
Identity = 46/123 (37.40%), Postives = 64/123 (52.03%), Query Frame = 1
Query:    4 SKVYIIHRRDSFRASKIMQNRALTNP---KIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPG----TTHTSVPGVFAAGDVQD 351
            S V +IHRRD  RA K++  + +      K+ ++W+ V+ E  G+                 Q  DL + GLF AIGH+P TK    QL++   GY+  K G     T T++PGVFAAGDV D
Sbjct:  170 SHVTLIHRRDKLRAEKMLSAQLIKKVEEGKVAIVWSHVIEEVLGDDQGVTGVHLKHVKEEKTQ--DLTIDGLFIAIGHDPNTKIFKEQLEMDEAGYLRAKSGLQGNATATNIPGVFAAGDVTD 290          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_BACSU (Thioredoxin reductase OS=Bacillus subtilis GN=trxB PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 2.508e-14
Identity = 45/117 (38.46%), Postives = 61/117 (52.14%), Query Frame = 1
Query:    4 SKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK 354
            SKV I+HRRD  RA  I+Q RA  N K+D +WN  V E + E               TG+ S+ K  G+F  IG  P +K  +     + +GYI T      T V G+FAAGD+++K
Sbjct:  169 SKVTIVHRRDKLRAQSILQARAFDNEKVDFLWNKTVKEIHEE--NGKVGNVTLVDTVTGEESEFKTDGVFIYIGMLPLSKPFENLGITNEEGYIETN-DRMETKVEGIFAAGDIREK 282          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_ECOLI (Thioredoxin reductase OS=Escherichia coli (strain K12) GN=trxB PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.275e-14
Identity = 50/123 (40.65%), Postives = 66/123 (53.66%), Query Frame = 1
Query:    4 SKVYIIHRRDSFRASKIMQNRALT---NPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPG----TTHTSVPGVFAAGDVQD 351
            S+V++IHRRD FRA KI+  R +    N  I +  N  + E  G+               +  +  L V+GLF AIGH P T   +GQL+L  +GYI  + G     T TS+PGVFAAGDV D
Sbjct:  170 SEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQN-SDNIESLDVAGLFVAIGHSPNTAIFEGQLEL-ENGYIKVQSGIHGNATQTSIPGVFAAGDVMD 290          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_ECO57 (Thioredoxin reductase OS=Escherichia coli O157:H7 GN=trxB PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.275e-14
Identity = 50/123 (40.65%), Postives = 66/123 (53.66%), Query Frame = 1
Query:    4 SKVYIIHRRDSFRASKIMQNRALT---NPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPG----TTHTSVPGVFAAGDVQD 351
            S+V++IHRRD FRA KI+  R +    N  I +  N  + E  G+               +  +  L V+GLF AIGH P T   +GQL+L  +GYI  + G     T TS+PGVFAAGDV D
Sbjct:  170 SEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQN-SDNIESLDVAGLFVAIGHSPNTAIFEGQLEL-ENGYIKVQSGIHGNATQTSIPGVFAAGDVMD 290          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_BORBU (Thioredoxin reductase OS=Borrelia burgdorferi GN=trxB PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.529e-14
Identity = 42/116 (36.21%), Postives = 68/116 (58.62%), Query Frame = 1
Query:    7 KVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK 354
            KVY+I R+++ RA  ++++     P I++++NS  +E  G+                  V +L+VS +F A+G++P T+FL G LDL  +G+I+TK     TSV GVF+ GDV +K
Sbjct:  191 KVYLIVRKNNLRAIAMLRDSVAKLPNIEILYNSEAIEVDGKSSVSSVKIFNKKDNV---VYELEVSAVFMAVGYKPNTEFLKGFLDLDEEGFIVTK-DVVKTSVDGVFSCGDVSNK 302          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_LISMO (Thioredoxin reductase OS=Listeria monocytogenes GN=trxB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.245e-13
Identity = 45/116 (38.79%), Postives = 61/116 (52.59%), Query Frame = 1
Query:    7 KVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK 354
            KV I+HRRD  RA +I+Q+RA  + K+D IWNS V E  G+                G  S + V G+F  +G  P TK          +GYI+T      T++PG+FAAGDV+ K
Sbjct:  171 KVTIVHRRDKLRAQQILQDRAFKDEKVDFIWNSTVEEIVGD--GKKVTGAKLVSTVDGSESIMPVDGVFIYVGLVPLTKAFLNLGITDDEGYIVTDE-EMRTNLPGIFAAGDVRAK 283          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_EUBAC (Thioredoxin reductase OS=Eubacterium acidaminophilum GN=trxB PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.245e-13
Identity = 45/122 (36.89%), Postives = 65/122 (53.28%), Query Frame = 1
Query:    7 KVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVS------GLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK 354
            KV I+HRRD  RA+K +Q +A  NPK+D +WNS + E  G+               TG+ ++   +      G+F  IG+ P +    G++ L   GYIIT      T+V GVFAAGD++ K
Sbjct:  169 KVTIVHRRDELRAAKSIQEKAFKNPKLDFMWNSAIEEIKGD---GIVESAVFKNLVTGETTEYFANEEDGTFGIFVFIGYIPKSDVFKGKITLDDAGYIIT-DDNMKTNVEGVFAAGDIRVK 286          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_STAAW (Thioredoxin reductase OS=Staphylococcus aureus (strain MW2) GN=trxB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.772e-13
Identity = 52/118 (44.07%), Postives = 66/118 (55.93%), Query Frame = 1
Query:    7 KVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPAT-KFLDGQLDLHSD-GYIITKPGTTHTSVPGVFAAGDVQDK 354
            KV I+HRRD  RA +I+Q+RA  N KID IW S  L++  E                G     +  G+F  IG +P T  F D  L + +D GYI+TK   T TSVPG+FAAGDV+DK
Sbjct:  169 KVTIVHRRDELRAQRILQDRAFKNDKIDFIW-SHTLKSINE-KDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKD--LGITNDVGYIVTKDDMT-TSVPGIFAAGDVRDK 281          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_STAAS (Thioredoxin reductase OS=Staphylococcus aureus (strain MSSA476) GN=trxB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.772e-13
Identity = 52/118 (44.07%), Postives = 66/118 (55.93%), Query Frame = 1
Query:    7 KVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPAT-KFLDGQLDLHSD-GYIITKPGTTHTSVPGVFAAGDVQDK 354
            KV I+HRRD  RA +I+Q+RA  N KID IW S  L++  E                G     +  G+F  IG +P T  F D  L + +D GYI+TK   T TSVPG+FAAGDV+DK
Sbjct:  169 KVTIVHRRDELRAQRILQDRAFKNDKIDFIW-SHTLKSINE-KDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKD--LGITNDVGYIVTKDDMT-TSVPGIFAAGDVRDK 281          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_STAAN (Thioredoxin reductase OS=Staphylococcus aureus (strain N315) GN=trxB PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.772e-13
Identity = 52/118 (44.07%), Postives = 66/118 (55.93%), Query Frame = 1
Query:    7 KVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPAT-KFLDGQLDLHSD-GYIITKPGTTHTSVPGVFAAGDVQDK 354
            KV I+HRRD  RA +I+Q+RA  N KID IW S  L++  E                G     +  G+F  IG +P T  F D  L + +D GYI+TK   T TSVPG+FAAGDV+DK
Sbjct:  169 KVTIVHRRDELRAQRILQDRAFKNDKIDFIW-SHTLKSINE-KDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKD--LGITNDVGYIVTKDDMT-TSVPGIFAAGDVRDK 281          
The following BLAST results are available for this feature:
BLAST of CX308743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
TRXB_COXBU8.619e-1537.40Thioredoxin reductase OS=Coxiella burnetii GN=trxB... [more]
TRXB_BACSU2.508e-1438.46Thioredoxin reductase OS=Bacillus subtilis GN=trxB... [more]
TRXB_ECOLI3.275e-1440.65Thioredoxin reductase OS=Escherichia coli (strain ... [more]
TRXB_ECO573.275e-1440.65Thioredoxin reductase OS=Escherichia coli O157:H7 ... [more]
TRXB_BORBU9.529e-1436.21Thioredoxin reductase OS=Borrelia burgdorferi GN=t... [more]
TRXB_LISMO1.245e-1338.79Thioredoxin reductase OS=Listeria monocytogenes GN... [more]
TRXB_EUBAC1.245e-1336.89Thioredoxin reductase OS=Eubacterium acidaminophil... [more]
TRXB_STAAW2.772e-1344.07Thioredoxin reductase OS=Staphylococcus aureus (st... [more]
TRXB_STAAS2.772e-1344.07Thioredoxin reductase OS=Staphylococcus aureus (st... [more]
TRXB_STAAN2.772e-1344.07Thioredoxin reductase OS=Staphylococcus aureus (st... [more]

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Properties
Property NameValue
Genbank descriptionC21003C11Rv AbsLeaSub1 Citrus clementina cDNA clone C21003C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308743 ID=CX308743; Name=CX308743; organism=Citrus clementina; type=EST; length=355bp
GGATCAAAAGTTTATATAATTCATAGGAGGGATAGTTTTAGAGCTTCGAA
GATTATGCAAAACAGGGCACTTACGAACCCTAAGATTGATGTGATTTGGA
ATTCGGTTGTTTTAGAGGCTTATGGAGAAGGGGATAAGAAGGTTCTGGGA
GGATTGAAGGTGAAGAATTTGGTGACTGGACAGGTTTCTGATTTGAAGGT
GTCTGGCTTGTTCTTTGCCATTGGACACGAGCCTGCTACTAAGTTTTTGG
ATGGTCAGTTGGACCTGCATTCTGATGGTTATATTATTACCAAACCTGGG
ACTACACACACTAGTGTCCCTGGAGTGTTTGCTGCTGGAGATGTTCAGGA
TAAGA
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