CX308748

Overview
NameCX308748
Unique NameCX308748
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_DROME (Eukaryotic initiation factor 4A OS=Drosophila melanogaster GN=eIF-4a PE=2 SV=3)

HSP 1 Score: 116.701 bits (291), Expect = 1.214e-25
Identity = 56/141 (39.72%), Postives = 86/141 (60.99%), Query Frame = 3
Query:   42 LNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464
            L DL D L   Q VIF  +  +  +L + +   NF    +H  M Q +R    K F+ G+ R+L+ TDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI F++   D  IL  ++  +   I+E+P  I
Sbjct:  260 LCDLYDTLSITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITD-DDRRILKDIEQFYHTTIEEMPANI 399          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: RH12_ARATH (DEAD-box ATP-dependent RNA helicase 12 OS=Arabidopsis thaliana GN=RH12 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.586e-25
Identity = 64/159 (40.25%), Postives = 90/159 (56.60%), Query Frame = 3
Query:    3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTY 479
            +Y  + E +K   LN L   L  NQ +IF  S +R   L K + E  +    IH+ M Q+ R   +  F+ G  R LV TDL  RGIDI+ VN+VIN+D P ++++YLHRVGR+GRFG  GLA+  V +  D   + Q +     +IK +P  ID + Y
Sbjct:  339 YYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLV-TYEDRFKMYQTEQELGTEIKPIPSNIDQAIY 496          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_LEIMA (Probable eukaryotic initiation factor 4A OS=Leishmania major GN=LMJ_0078 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.586e-25
Identity = 60/159 (37.74%), Postives = 95/159 (59.75%), Query Frame = 3
Query:    6 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482
            +I + E  K   L DL + +   Q VIF  +  +   + + L + N     +H+ M + +R      F+ G+ R+LV TDLV RGID+  VNIVIN+D+P + + YLHR+GR GR+G KG+AI FV+   D ++L++++A +   I ELP  +D + Y+
Sbjct:  246 FIAVEEEHKLDTLMDLYETVSIAQSVIFANTRRKVDWIAEKLNQSNHTVSSMHAEMPKSDRERVMNTFRSGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGRKGVAINFVTE-KDVELLHEIEAHYHTQIDELP--VDFAAYL 401          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_LEIIN (Probable eukaryotic initiation factor 4A OS=Leishmania infantum GN=LinJ01.0780 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.586e-25
Identity = 60/159 (37.74%), Postives = 95/159 (59.75%), Query Frame = 3
Query:    6 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482
            +I + E  K   L DL + +   Q VIF  +  +   + + L + N     +H+ M + +R      F+ G+ R+LV TDLV RGID+  VNIVIN+D+P + + YLHR+GR GR+G KG+AI FV+   D ++L++++A +   I ELP  +D + Y+
Sbjct:  246 FIAVEEEHKLDTLMDLYETVSIAQSVIFANTRRKVDWIAEKLNQSNHTVSSMHAEMPKSDRERVMNTFRSGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGRKGVAINFVTE-KDVELLHEIEAHYHTQIDELP--VDFAAYL 401          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_DEBHA (ATP-dependent RNA helicase eIF4A OS=Debaryomyces hansenii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.586e-25
Identity = 57/141 (40.43%), Postives = 89/141 (63.12%), Query Frame = 3
Query:   42 LNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464
            L DL D++   Q VIF  + S+   L   L   NF    IH+ + Q +R T    F+ G+ RIL++TDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV+   D  ++ +++  +   I+E+P  I
Sbjct:  253 LCDLYDSISVTQAVIFCNTRSKVEFLTTKLKGENFTVSAIHADLPQADRDTIMNEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTD-QDVGMMREIEKFYSTQIEEMPADI 392          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: RH6_ARATH (DEAD-box ATP-dependent RNA helicase 6 OS=Arabidopsis thaliana GN=RH6 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.071e-25
Identity = 64/159 (40.25%), Postives = 90/159 (56.60%), Query Frame = 3
Query:    3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTY 479
            +Y  + E +K   LN L   L  NQ +IF  S +R   L K + E  +    IH+ M Q+ R   +  F+ G  R LV TDL  RGIDI+ VN+VIN+D P ++++YLHRVGR+GRFG  GLA+  V +  D   + Q +     +IK +P  ID + Y
Sbjct:  369 YYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLV-TYEDRFKMYQTEQELGTEIKPIPSLIDKAIY 526          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_YARLI (ATP-dependent RNA helicase eIF4A OS=Yarrowia lipolytica GN=TIF1 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.071e-25
Identity = 57/148 (38.51%), Postives = 91/148 (61.49%), Query Frame = 3
Query:   21 ELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464
            E  K   L DL + ++ +Q VIF  +  +   L + L E +F    +H    Q +R    K F+ G+ RIL+ TDL+ RGID+++V++VIN+D+P + + Y+HR+GR GRFG KG+AI FV+S  D  +L +++  +  +I E+P  I
Sbjct:  245 ESYKFEVLCDLYETINVSQAVIFCNTRRKVDYLTQALTEADFTVSSMHGETEQSQRDVIMKAFRTGSSRILITTDLLARGIDVQQVSLVINFDLPSNRENYIHRIGRGGRFGRKGVAINFVTS-EDHGMLKELERFYSTEIVEMPTNI 391          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_CRYPV (Eukaryotic initiation factor 4A OS=Cryptosporidium parvum GN=EIF4-A PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.705e-25
Identity = 56/140 (40.00%), Postives = 90/140 (64.29%), Query Frame = 3
Query:   42 LNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDI--LNQVQARFEVDIKELP 455
            L DL + L   Q +I+  +  R  +L K + E +F    +H  M Q++R    + F+ G+ R+L+ TDL+ RGID+++V++VINYD+P S +TY+HR+GR+GRFG KG++I FV   +D DI  L  ++  +   I+E+P
Sbjct:  261 LIDLYETLTIVQAIIYCNTRRRVDQLTKQMRERDFTCSSMHGDMDQKDREVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPVSPETYIHRIGRSGRFGKKGVSINFV---TDDDIVCLRDIERHYNTQIEEMP 397          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_COCIM (ATP-dependent RNA helicase eIF4A OS=Coccidioides immitis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.705e-25
Identity = 58/154 (37.66%), Postives = 95/154 (61.69%), Query Frame = 3
Query:    6 YIKLSELE-KNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464
            YI + + E K   L+DL + +   Q VIF  +  +   L   L+  +F    +H  M Q +R    K F+ G+ R+L+ATDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV +A D  ++ +++  +   I+E+P  +
Sbjct:  242 YIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLIARDFTVSAMHGEMEQNQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFV-TADDVRMMREIEQFYSTQIEEMPMNV 394          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: FAL1_PHANO (ATP-dependent RNA helicase FAL1 OS=Phaeosphaeria nodorum GN=FAL1 PE=3 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 2.705e-25
Identity = 56/141 (39.72%), Postives = 86/141 (60.99%), Query Frame = 3
Query:   42 LNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464
            L DL D L   Q VIF  +  +   L   + E NF    +H  M Q ER +  + F++ N R+L++TD+  RGID+++V++VINYD+P + + Y+HR+GR+GRFG KG+AI FV+   D  IL  ++  +   I E+P  +
Sbjct:  230 LCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQRERDSIMQDFRQANSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTQ-EDVRILRDIELYYSTQIDEMPMNV 369          
The following BLAST results are available for this feature:
BLAST of CX308748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A_DROME1.214e-2539.72Eukaryotic initiation factor 4A OS=Drosophila mela... [more]
RH12_ARATH1.586e-2540.25DEAD-box ATP-dependent RNA helicase 12 OS=Arabidop... [more]
IF4A_LEIMA1.586e-2537.74Probable eukaryotic initiation factor 4A OS=Leishm... [more]
IF4A_LEIIN1.586e-2537.74Probable eukaryotic initiation factor 4A OS=Leishm... [more]
IF4A_DEBHA1.586e-2540.43ATP-dependent RNA helicase eIF4A OS=Debaryomyces h... [more]
RH6_ARATH2.071e-2540.25DEAD-box ATP-dependent RNA helicase 6 OS=Arabidops... [more]
IF4A_YARLI2.071e-2538.51ATP-dependent RNA helicase eIF4A OS=Yarrowia lipol... [more]
IF4A_CRYPV2.705e-2540.00Eukaryotic initiation factor 4A OS=Cryptosporidium... [more]
IF4A_COCIM2.705e-2537.66ATP-dependent RNA helicase eIF4A OS=Coccidioides i... [more]
FAL1_PHANO2.705e-2539.72ATP-dependent RNA helicase FAL1 OS=Phaeosphaeria n... [more]

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Properties
Property NameValue
Genbank descriptionC21003D05Rv AbsLeaSub1 Citrus clementina cDNA clone C21003D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308748 ID=CX308748; Name=CX308748; organism=Citrus clementina; type=EST; length=702bp
AGCACTACATCAAATTGAGTGAGCTGGAGAAAAATCGGAAGTTGAATGAT
CTCCTTGATGCATTGGACTTTAATCAAGTTGTTATCTTTGTCAAAAGTGC
TAGCCGAGCAGCGGAGTTAAACAAGTTACTTGTAGAATGCAATTTTCCTT
CTATATGCATCCATTCTGGCATGTCCCAAGAAGAAAGGTTGACGCGTTAC
AAAGGTTTCAAGGAGGGGAACAAGAGGATTCTTGTGGCCACAGATTTGGT
TGGTAGGGGAATTGACATTGAGCGTGTCAACATTGTCATCAATTATGACA
TGCCAGATTCTGCTGATACTTATCTGCACAGGGTTGGTAGAGCTGGTAGG
TTTGGCACCAAGGGCCTTGCAATTACTTTTGTATCATCTGCTTCAGACTC
CGATATTCTCAATCAGGTTCAGGCAAGGTTTGAAGTAGATATAAAGGAGC
TTCCTGAGCAGATTGATACATCTACATACATGCCATCATAGTGGAGATCT
GTTCTCTGATGTGGAAAATTTGAGGCGCATGTGGAAGCAGGGTGCTGAAG
GCCCTTTATGTATTTGTTTCTTTAGATGAAGTCCAATGGCTTTCATATAT
GTTGCCTTGGAGATTTGTCAGATGGATCCCTCTATTTTGTGGTTTTACGC
TGCCTTTTCTTGTTTTTGGGATTTGTAGCCTTTTATACCTTCTGGGTACC
CT
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