CX308748
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_DROME (Eukaryotic initiation factor 4A OS=Drosophila melanogaster GN=eIF-4a PE=2 SV=3) HSP 1 Score: 116.701 bits (291), Expect = 1.214e-25 Identity = 56/141 (39.72%), Postives = 86/141 (60.99%), Query Frame = 3 Query: 42 LNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464 L DL D L Q VIF + + +L + + NF +H M Q +R K F+ G+ R+L+ TDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI F++ D IL ++ + I+E+P I Sbjct: 260 LCDLYDTLSITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITD-DDRRILKDIEQFYHTTIEEMPANI 399
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: RH12_ARATH (DEAD-box ATP-dependent RNA helicase 12 OS=Arabidopsis thaliana GN=RH12 PE=2 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.586e-25 Identity = 64/159 (40.25%), Postives = 90/159 (56.60%), Query Frame = 3 Query: 3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTY 479 +Y + E +K LN L L NQ +IF S +R L K + E + IH+ M Q+ R + F+ G R LV TDL RGIDI+ VN+VIN+D P ++++YLHRVGR+GRFG GLA+ V + D + Q + +IK +P ID + Y Sbjct: 339 YYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLV-TYEDRFKMYQTEQELGTEIKPIPSNIDQAIY 496
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_LEIMA (Probable eukaryotic initiation factor 4A OS=Leishmania major GN=LMJ_0078 PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.586e-25 Identity = 60/159 (37.74%), Postives = 95/159 (59.75%), Query Frame = 3 Query: 6 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482 +I + E K L DL + + Q VIF + + + + L + N +H+ M + +R F+ G+ R+LV TDLV RGID+ VNIVIN+D+P + + YLHR+GR GR+G KG+AI FV+ D ++L++++A + I ELP +D + Y+ Sbjct: 246 FIAVEEEHKLDTLMDLYETVSIAQSVIFANTRRKVDWIAEKLNQSNHTVSSMHAEMPKSDRERVMNTFRSGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGRKGVAINFVTE-KDVELLHEIEAHYHTQIDELP--VDFAAYL 401
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_LEIIN (Probable eukaryotic initiation factor 4A OS=Leishmania infantum GN=LinJ01.0780 PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.586e-25 Identity = 60/159 (37.74%), Postives = 95/159 (59.75%), Query Frame = 3 Query: 6 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482 +I + E K L DL + + Q VIF + + + + L + N +H+ M + +R F+ G+ R+LV TDLV RGID+ VNIVIN+D+P + + YLHR+GR GR+G KG+AI FV+ D ++L++++A + I ELP +D + Y+ Sbjct: 246 FIAVEEEHKLDTLMDLYETVSIAQSVIFANTRRKVDWIAEKLNQSNHTVSSMHAEMPKSDRERVMNTFRSGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGRKGVAINFVTE-KDVELLHEIEAHYHTQIDELP--VDFAAYL 401
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_DEBHA (ATP-dependent RNA helicase eIF4A OS=Debaryomyces hansenii GN=TIF1 PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.586e-25 Identity = 57/141 (40.43%), Postives = 89/141 (63.12%), Query Frame = 3 Query: 42 LNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464 L DL D++ Q VIF + S+ L L NF IH+ + Q +R T F+ G+ RIL++TDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV+ D ++ +++ + I+E+P I Sbjct: 253 LCDLYDSISVTQAVIFCNTRSKVEFLTTKLKGENFTVSAIHADLPQADRDTIMNEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTD-QDVGMMREIEKFYSTQIEEMPADI 392
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: RH6_ARATH (DEAD-box ATP-dependent RNA helicase 6 OS=Arabidopsis thaliana GN=RH6 PE=2 SV=2) HSP 1 Score: 115.931 bits (289), Expect = 2.071e-25 Identity = 64/159 (40.25%), Postives = 90/159 (56.60%), Query Frame = 3 Query: 3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTY 479 +Y + E +K LN L L NQ +IF S +R L K + E + IH+ M Q+ R + F+ G R LV TDL RGIDI+ VN+VIN+D P ++++YLHRVGR+GRFG GLA+ V + D + Q + +IK +P ID + Y Sbjct: 369 YYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLV-TYEDRFKMYQTEQELGTEIKPIPSLIDKAIY 526
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_YARLI (ATP-dependent RNA helicase eIF4A OS=Yarrowia lipolytica GN=TIF1 PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.071e-25 Identity = 57/148 (38.51%), Postives = 91/148 (61.49%), Query Frame = 3 Query: 21 ELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464 E K L DL + ++ +Q VIF + + L + L E +F +H Q +R K F+ G+ RIL+ TDL+ RGID+++V++VIN+D+P + + Y+HR+GR GRFG KG+AI FV+S D +L +++ + +I E+P I Sbjct: 245 ESYKFEVLCDLYETINVSQAVIFCNTRRKVDYLTQALTEADFTVSSMHGETEQSQRDVIMKAFRTGSSRILITTDLLARGIDVQQVSLVINFDLPSNRENYIHRIGRGGRFGRKGVAINFVTS-EDHGMLKELERFYSTEIVEMPTNI 391
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_CRYPV (Eukaryotic initiation factor 4A OS=Cryptosporidium parvum GN=EIF4-A PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.705e-25 Identity = 56/140 (40.00%), Postives = 90/140 (64.29%), Query Frame = 3 Query: 42 LNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDI--LNQVQARFEVDIKELP 455 L DL + L Q +I+ + R +L K + E +F +H M Q++R + F+ G+ R+L+ TDL+ RGID+++V++VINYD+P S +TY+HR+GR+GRFG KG++I FV +D DI L ++ + I+E+P Sbjct: 261 LIDLYETLTIVQAIIYCNTRRRVDQLTKQMRERDFTCSSMHGDMDQKDREVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPVSPETYIHRIGRSGRFGKKGVSINFV---TDDDIVCLRDIERHYNTQIEEMP 397
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_COCIM (ATP-dependent RNA helicase eIF4A OS=Coccidioides immitis GN=TIF1 PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.705e-25 Identity = 58/154 (37.66%), Postives = 95/154 (61.69%), Query Frame = 3 Query: 6 YIKLSELE-KNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464 YI + + E K L+DL + + Q VIF + + L L+ +F +H M Q +R K F+ G+ R+L+ATDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV +A D ++ +++ + I+E+P + Sbjct: 242 YIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLIARDFTVSAMHGEMEQNQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFV-TADDVRMMREIEQFYSTQIEEMPMNV 394
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: FAL1_PHANO (ATP-dependent RNA helicase FAL1 OS=Phaeosphaeria nodorum GN=FAL1 PE=3 SV=3) HSP 1 Score: 115.546 bits (288), Expect = 2.705e-25 Identity = 56/141 (39.72%), Postives = 86/141 (60.99%), Query Frame = 3 Query: 42 LNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464 L DL D L Q VIF + + L + E NF +H M Q ER + + F++ N R+L++TD+ RGID+++V++VINYD+P + + Y+HR+GR+GRFG KG+AI FV+ D IL ++ + I E+P + Sbjct: 230 LCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQRERDSIMQDFRQANSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTQ-EDVRILRDIELYYSTQIDEMPMNV 369 The following BLAST results are available for this feature:
BLAST of CX308748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX308748 ID=CX308748; Name=CX308748; organism=Citrus clementina; type=EST; length=702bpback to top |