CX308748

Overview
NameCX308748
Unique NameCX308748
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DHH1_MAGGR (ATP-dependent RNA helicase DHH1 OS=Magnaporthe grisea GN=DHH1 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.705e-25
Identity = 62/160 (38.75%), Postives = 92/160 (57.50%), Query Frame = 3
Query:    3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482
            +Y  + E +K   LN L   L  NQ +IF  S +R   L K + E  +     H+ M Q+ R   +  F+ G  R LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GR+G  GLAI  +S     ++ N ++     +I+ +P  ID S Y+
Sbjct:  251 YYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMQQQARNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLISWEDRFNLYN-IERDLGTEIQPIPSTIDKSLYV 409          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DHH1_CHAGB (ATP-dependent RNA helicase DHH1 OS=Chaetomium globosum GN=DHH1 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.705e-25
Identity = 61/160 (38.12%), Postives = 94/160 (58.75%), Query Frame = 3
Query:    3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482
            +Y  + E +K   LN L   L  NQ +IF  S +R   L K + E  +     H+ M+Q+ R   +  F+ G  R LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GR+G  GLAI  ++     ++ N ++     +I+ +P+ ID S Y+
Sbjct:  226 YYAYVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMAQQARNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLINWDDRFNLYN-IERDLGTEIQPIPQTIDKSLYV 384          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DDX6_DICDI (Probable ATP-dependent RNA helicase ddx6 OS=Dictyostelium discoideum GN=ddx6 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.705e-25
Identity = 64/159 (40.25%), Postives = 90/159 (56.60%), Query Frame = 3
Query:    3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTY 479
            +Y  + E +K   LN L   L  NQ +IF  S +R   L K + E  +    IH+ M Q  R   +  F+ G  R LV++DL  RGIDI+ VN+VIN+D P  ++TYLHR+GR+GRFG  GLAI  + +  D   L +++     +IK +P  ID S Y
Sbjct:  264 YYAFVEERQKIHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFFIHAKMVQAHRNRVFHDFRNGACRNLVSSDLFTRGIDIQDVNVVINFDFPKHSETYLHRIGRSGRFGHLGLAINLI-TYEDRFSLYKIEQELGTEIKPIPPVIDKSLY 421          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: FAL1_CANGA (ATP-dependent RNA helicase FAL1 OS=Candida glabrata GN=FAL1 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 56/155 (36.13%), Postives = 96/155 (61.94%), Query Frame = 3
Query:    3 HYIKLSELE-KNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464
            +Y+ + + E K   L D+ D+L   Q VIF  S  +   L   L + NF  I +H  M Q+ER      F+ G  R+L++TD+  RGID+++V++VINYD+P+  + Y+HR+GR+GRFG KG+AI F++   D+  + +++  +++ +K +P  +
Sbjct:  242 YYVNVEKEEWKFDTLCDIYDSLTITQCVIFCNSKKKVDWLAHKLKQSNFAVISMHGDMKQDERDRVMNEFRTGQSRVLISTDVWARGIDVQQVSLVINYDLPEITENYVHRIGRSGRFGRKGVAINFLTKI-DASRMKEIEKYYKIKVKPMPADL 395          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DHH1_NEUCR (ATP-dependent RNA helicase dhh-1 OS=Neurospora crassa GN=dhh-1 PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 61/160 (38.12%), Postives = 94/160 (58.75%), Query Frame = 3
Query:    3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482
            +Y  + E +K   LN L   L  NQ +IF  S +R   L K + E  +     H+ M+Q+ R   +  F+ G  R LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GR+G  GLAI  ++     ++ N ++     +I+ +P+ ID S Y+
Sbjct:  260 YYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMAQQARNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLINWDDRFNLYN-IERDLGTEIQPIPQTIDKSLYV 418          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DHH1_NEOFI (ATP-dependent RNA helicase dhh1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 62/160 (38.75%), Postives = 92/160 (57.50%), Query Frame = 3
Query:    3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482
            +Y  + E +K   LN L   L  NQ +IF  S +R   L K + E  +     H+ M Q+ R   +  F+ G  R LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG  GLAI  + +  D   L +++     +I+ +P+ ID   Y+
Sbjct:  262 YYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLI-NWDDRFNLYKIEQELGTEIQPIPQNIDKKLYV 420          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DHH1_ASPTN (ATP-dependent RNA helicase dhh1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 62/160 (38.75%), Postives = 92/160 (57.50%), Query Frame = 3
Query:    3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482
            +Y  + E +K   LN L   L  NQ +IF  S +R   L K + E  +     H+ M Q+ R   +  F+ G  R LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG  GLAI  + +  D   L +++     +I+ +P+ ID   Y+
Sbjct:  262 YYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLI-NWDDRFNLYKIEQELGTEIQPIPQNIDKKLYV 420          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DHH1_ASPOR (ATP-dependent RNA helicase dhh1 OS=Aspergillus oryzae GN=dhh1 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 62/160 (38.75%), Postives = 92/160 (57.50%), Query Frame = 3
Query:    3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482
            +Y  + E +K   LN L   L  NQ +IF  S +R   L K + E  +     H+ M Q+ R   +  F+ G  R LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG  GLAI  + +  D   L +++     +I+ +P+ ID   Y+
Sbjct:  262 YYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLI-NWDDRFNLYKIEQELGTEIQPIPQNIDKKLYV 420          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DHH1_ASPNC (ATP-dependent RNA helicase dhh1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 62/160 (38.75%), Postives = 92/160 (57.50%), Query Frame = 3
Query:    3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482
            +Y  + E +K   LN L   L  NQ +IF  S +R   L K + E  +     H+ M Q+ R   +  F+ G  R LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG  GLAI  + +  D   L +++     +I+ +P+ ID   Y+
Sbjct:  262 YYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLI-NWEDRFNLYKIEQELGTEIQPIPQNIDKKLYV 420          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DHH1_ASPFU (ATP-dependent RNA helicase dhh1 OS=Aspergillus fumigatus GN=dhh1 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 62/160 (38.75%), Postives = 92/160 (57.50%), Query Frame = 3
Query:    3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482
            +Y  + E +K   LN L   L  NQ +IF  S +R   L K + E  +     H+ M Q+ R   +  F+ G  R LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG  GLAI  + +  D   L +++     +I+ +P+ ID   Y+
Sbjct:  262 YYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLI-NWDDRFNLYKIEQELGTEIQPIPQNIDKKLYV 420          
The following BLAST results are available for this feature:
BLAST of CX308748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DHH1_MAGGR2.705e-2538.75ATP-dependent RNA helicase DHH1 OS=Magnaporthe gri... [more]
DHH1_CHAGB2.705e-2538.13ATP-dependent RNA helicase DHH1 OS=Chaetomium glob... [more]
DDX6_DICDI2.705e-2540.25Probable ATP-dependent RNA helicase ddx6 OS=Dictyo... [more]
FAL1_CANGA3.532e-2536.13ATP-dependent RNA helicase FAL1 OS=Candida glabrat... [more]
DHH1_NEUCR3.532e-2538.13ATP-dependent RNA helicase dhh-1 OS=Neurospora cra... [more]
DHH1_NEOFI3.532e-2538.75ATP-dependent RNA helicase dhh1 OS=Neosartorya fis... [more]
DHH1_ASPTN3.532e-2538.75ATP-dependent RNA helicase dhh1 OS=Aspergillus ter... [more]
DHH1_ASPOR3.532e-2538.75ATP-dependent RNA helicase dhh1 OS=Aspergillus ory... [more]
DHH1_ASPNC3.532e-2538.75ATP-dependent RNA helicase dhh1 OS=Aspergillus nig... [more]
DHH1_ASPFU3.532e-2538.75ATP-dependent RNA helicase dhh1 OS=Aspergillus fum... [more]

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Properties
Property NameValue
Genbank descriptionC21003D05Rv AbsLeaSub1 Citrus clementina cDNA clone C21003D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308748 ID=CX308748; Name=CX308748; organism=Citrus clementina; type=EST; length=702bp
AGCACTACATCAAATTGAGTGAGCTGGAGAAAAATCGGAAGTTGAATGAT
CTCCTTGATGCATTGGACTTTAATCAAGTTGTTATCTTTGTCAAAAGTGC
TAGCCGAGCAGCGGAGTTAAACAAGTTACTTGTAGAATGCAATTTTCCTT
CTATATGCATCCATTCTGGCATGTCCCAAGAAGAAAGGTTGACGCGTTAC
AAAGGTTTCAAGGAGGGGAACAAGAGGATTCTTGTGGCCACAGATTTGGT
TGGTAGGGGAATTGACATTGAGCGTGTCAACATTGTCATCAATTATGACA
TGCCAGATTCTGCTGATACTTATCTGCACAGGGTTGGTAGAGCTGGTAGG
TTTGGCACCAAGGGCCTTGCAATTACTTTTGTATCATCTGCTTCAGACTC
CGATATTCTCAATCAGGTTCAGGCAAGGTTTGAAGTAGATATAAAGGAGC
TTCCTGAGCAGATTGATACATCTACATACATGCCATCATAGTGGAGATCT
GTTCTCTGATGTGGAAAATTTGAGGCGCATGTGGAAGCAGGGTGCTGAAG
GCCCTTTATGTATTTGTTTCTTTAGATGAAGTCCAATGGCTTTCATATAT
GTTGCCTTGGAGATTTGTCAGATGGATCCCTCTATTTTGTGGTTTTACGC
TGCCTTTTCTTGTTTTTGGGATTTGTAGCCTTTTATACCTTCTGGGTACC
CT
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