CX308748

Overview
NameCX308748
Unique NameCX308748
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DED1_ASPOR (ATP-dependent RNA helicase ded1 OS=Aspergillus oryzae GN=ded1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.624e-17
Identity = 50/127 (39.37%), Postives = 70/127 (55.12%), Query Frame = 3
Query:   12 KLSELEKNRKLNDLLDALDFNQV----VIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 380
            K+  +E + K + LLD L  +      +IFV++   A  L+  L+   FP+  IH   +Q ER    + F+ G   ILVAT +  RG+DI  V  VINYD+P   D Y+HR+GR GR G  G+A  F
Sbjct:  425 KVEYVEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADSLSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAF 551          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DED1_ASPNC (ATP-dependent RNA helicase ded1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=ded1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.624e-17
Identity = 50/127 (39.37%), Postives = 70/127 (55.12%), Query Frame = 3
Query:   12 KLSELEKNRKLNDLLDALDFNQV----VIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 380
            K+  +E + K + LLD L  +      +IFV++   A  L+  L+   FP+  IH   +Q ER    + F+ G   ILVAT +  RG+DI  V  VINYD+P   D Y+HR+GR GR G  G+A  F
Sbjct:  426 KVEYVEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADSLSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAF 552          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DED1_ASPFU (ATP-dependent RNA helicase ded1 OS=Aspergillus fumigatus GN=ded1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.624e-17
Identity = 50/132 (37.88%), Postives = 73/132 (55.30%), Query Frame = 3
Query:   12 KLSELEKNRKLNDLLDALDFNQV----VIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 395
            K+  +E + K + LLD L  +      +IFV++   A  L+  L+   FP+  IH   +Q ER    + F+ G   ILVAT +  RG+DI  V  VINYD+P   D Y+HR+GR GR G  G+A  F + ++
Sbjct:  427 KVEYVEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADALSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRSN 558          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DEAD_MYCTU (Cold-shock DEAD box protein A homolog OS=Mycobacterium tuberculosis GN=deaD PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.624e-17
Identity = 45/129 (34.88%), Postives = 75/129 (58.14%), Query Frame = 3
Query:    9 IKLSELEKNRKLNDLLDALD---FNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 386
            I  S ++  RK++ L   L+   F  +++FV++     E+ + L    F +  I   + Q +R       ++G+  ILVATD+  RG+D+ER++ V+NYD+P   ++Y+HR+GR GR G  G A+ FVS
Sbjct:  227 ISQSYIQVARKMDALTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVS 355          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DDX3_DROME (ATP-dependent RNA helicase bel OS=Drosophila melanogaster GN=bel PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.624e-17
Identity = 48/127 (37.80%), Postives = 71/127 (55.91%), Query Frame = 3
Query:   21 ELEKNRKLNDLLDAL-------DFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 380
            E +K   L DLL ++         +  +IFV++   A  L + L +CN P   IH   +Q+ER    + F+ G+  ILVAT +  RG+DI  V  VIN+D+P   + Y+HR+GR GR G  G+A +F
Sbjct:  536 EPDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSF 662          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: RRP3_VANPO (ATP-dependent rRNA helicase RRP3 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=RRP3 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.039e-17
Identity = 49/144 (34.03%), Postives = 83/144 (57.64%), Query Frame = 3
Query:   30 KNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 461
            KN  L  L++      +++F ++ + A  +  L     F +  +H  ++Q +R      FK G + ILVATD+  RG+DI  V+IVINYD+P  + +Y+HRVGR  R G  G +I+ VS   D +++ +++   +V  K+LP++
Sbjct:  313 KNTYLIYLMNEFIGKTIIVFTRTKANAERITTLANLLEFSATALHGDLNQNQRTGSLDLFKAGRRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ-YDLELILRIE---DVLGKKLPKE 452          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: ROK1_DEBHA (ATP-dependent RNA helicase ROK1 OS=Debaryomyces hansenii GN=ROK1 PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 6.039e-17
Identity = 43/110 (39.09%), Postives = 67/110 (60.91%), Query Frame = 3
Query:   78 VVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDI 407
            ++IF++S +RA  L   L+        IH+  + ++R    K FK G+  +L+ TD++ RG+D + VN+VINYD+P SA  Y+HR+GR GR G  G A+TF +   D  +
Sbjct:  364 IIIFLQSITRAKALFHELLYDRLNVDVIHAERTPKQRDEVIKRFKSGDIWVLITTDVIARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRGGKAGKAVTFFTKEDDKAV 473          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: ROK1_CANAL (ATP-dependent RNA helicase CHR1 OS=Candida albicans GN=CHR1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.039e-17
Identity = 44/110 (40.00%), Postives = 67/110 (60.91%), Query Frame = 3
Query:   78 VVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDI 407
            ++IF++S +RA  L   L+        IH+  + ++R    K FK G+  +L+ TD++ RG+D + VN+VINYD+P SA  Y+HR+GR GR G  G A+TF +   D  I
Sbjct:  381 IIIFLQSITRAKALFHELLYDRLNVDVIHAERTPKQREEVIKRFKNGDIWVLITTDVLARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRGGKAGKAVTFFTKEDDKAI 490          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: RH35B_ORYSJ (DEAD-box ATP-dependent RNA helicase 35B OS=Oryza sativa subsp. japonica GN=Os06g0697200 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.039e-17
Identity = 45/125 (36.00%), Postives = 70/125 (56.00%), Query Frame = 3
Query:   78 VVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKEL 452
            V++F +  +    + + L+     ++ IH G   EER   +K FK   K +LVATD+  +G+DI  +  VINYDMP   + Y+HR+GR GR G  G+A TF++        NQ +    +D+K+L
Sbjct:  427 VLVFCEHKADVDYIQEFLLLKGVEAVAIHGGKDDEERKDAFKSFKASEKDVLVATDVASKGLDIPDIQHVINYDMPAEIENYVHRIGRTGRRGKTGVATTFINK-------NQTETTL-LDLKQL 543          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: PRP5_ASPOR (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus oryzae GN=prp5 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.039e-17
Identity = 56/162 (34.57%), Postives = 87/162 (53.70%), Query Frame = 3
Query:   18 SELEKNRKLNDLLDAL---DFNQ---VVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYMP 485
            SE +K  +L +LL  L   D N+    +IFV+    A  L + L+   +P + IH G  Q +R +  + FK G   +L+AT +  RG+D++++ +V+NYD P+  + Y+HR GR GR G  G A+TF         L + Q R+ VDI +  +Q   S   P
Sbjct:  783 SEDKKFIRLLELLGNLYSTDENEDARALIFVERQEGADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTF---------LTEDQERYSVDIAKALKQSGQSVPEP 935          
The following BLAST results are available for this feature:
BLAST of CX308748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DED1_ASPOR4.624e-1739.37ATP-dependent RNA helicase ded1 OS=Aspergillus ory... [more]
DED1_ASPNC4.624e-1739.37ATP-dependent RNA helicase ded1 OS=Aspergillus nig... [more]
DED1_ASPFU4.624e-1737.88ATP-dependent RNA helicase ded1 OS=Aspergillus fum... [more]
DEAD_MYCTU4.624e-1734.88Cold-shock DEAD box protein A homolog OS=Mycobacte... [more]
DDX3_DROME4.624e-1737.80ATP-dependent RNA helicase bel OS=Drosophila melan... [more]
RRP3_VANPO6.039e-1734.03ATP-dependent rRNA helicase RRP3 OS=Vanderwaltozym... [more]
ROK1_DEBHA6.039e-1739.09ATP-dependent RNA helicase ROK1 OS=Debaryomyces ha... [more]
ROK1_CANAL6.039e-1740.00ATP-dependent RNA helicase CHR1 OS=Candida albican... [more]
RH35B_ORYSJ6.039e-1736.00DEAD-box ATP-dependent RNA helicase 35B OS=Oryza s... [more]
PRP5_ASPOR6.039e-1734.57Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]

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Properties
Property NameValue
Genbank descriptionC21003D05Rv AbsLeaSub1 Citrus clementina cDNA clone C21003D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308748 ID=CX308748; Name=CX308748; organism=Citrus clementina; type=EST; length=702bp
AGCACTACATCAAATTGAGTGAGCTGGAGAAAAATCGGAAGTTGAATGAT
CTCCTTGATGCATTGGACTTTAATCAAGTTGTTATCTTTGTCAAAAGTGC
TAGCCGAGCAGCGGAGTTAAACAAGTTACTTGTAGAATGCAATTTTCCTT
CTATATGCATCCATTCTGGCATGTCCCAAGAAGAAAGGTTGACGCGTTAC
AAAGGTTTCAAGGAGGGGAACAAGAGGATTCTTGTGGCCACAGATTTGGT
TGGTAGGGGAATTGACATTGAGCGTGTCAACATTGTCATCAATTATGACA
TGCCAGATTCTGCTGATACTTATCTGCACAGGGTTGGTAGAGCTGGTAGG
TTTGGCACCAAGGGCCTTGCAATTACTTTTGTATCATCTGCTTCAGACTC
CGATATTCTCAATCAGGTTCAGGCAAGGTTTGAAGTAGATATAAAGGAGC
TTCCTGAGCAGATTGATACATCTACATACATGCCATCATAGTGGAGATCT
GTTCTCTGATGTGGAAAATTTGAGGCGCATGTGGAAGCAGGGTGCTGAAG
GCCCTTTATGTATTTGTTTCTTTAGATGAAGTCCAATGGCTTTCATATAT
GTTGCCTTGGAGATTTGTCAGATGGATCCCTCTATTTTGTGGTTTTACGC
TGCCTTTTCTTGTTTTTGGGATTTGTAGCCTTTTATACCTTCTGGGTACC
CT
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