CX308748
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DED1_ASPOR (ATP-dependent RNA helicase ded1 OS=Aspergillus oryzae GN=ded1 PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.624e-17 Identity = 50/127 (39.37%), Postives = 70/127 (55.12%), Query Frame = 3 Query: 12 KLSELEKNRKLNDLLDALDFNQV----VIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 380 K+ +E + K + LLD L + +IFV++ A L+ L+ FP+ IH +Q ER + F+ G ILVAT + RG+DI V VINYD+P D Y+HR+GR GR G G+A F Sbjct: 425 KVEYVEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADSLSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAF 551
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DED1_ASPNC (ATP-dependent RNA helicase ded1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=ded1 PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.624e-17 Identity = 50/127 (39.37%), Postives = 70/127 (55.12%), Query Frame = 3 Query: 12 KLSELEKNRKLNDLLDALDFNQV----VIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 380 K+ +E + K + LLD L + +IFV++ A L+ L+ FP+ IH +Q ER + F+ G ILVAT + RG+DI V VINYD+P D Y+HR+GR GR G G+A F Sbjct: 426 KVEYVEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADSLSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAF 552
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DED1_ASPFU (ATP-dependent RNA helicase ded1 OS=Aspergillus fumigatus GN=ded1 PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.624e-17 Identity = 50/132 (37.88%), Postives = 73/132 (55.30%), Query Frame = 3 Query: 12 KLSELEKNRKLNDLLDALDFNQV----VIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 395 K+ +E + K + LLD L + +IFV++ A L+ L+ FP+ IH +Q ER + F+ G ILVAT + RG+DI V VINYD+P D Y+HR+GR GR G G+A F + ++ Sbjct: 427 KVEYVEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADALSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRSN 558
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DEAD_MYCTU (Cold-shock DEAD box protein A homolog OS=Mycobacterium tuberculosis GN=deaD PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.624e-17 Identity = 45/129 (34.88%), Postives = 75/129 (58.14%), Query Frame = 3 Query: 9 IKLSELEKNRKLNDLLDALD---FNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 386 I S ++ RK++ L L+ F +++FV++ E+ + L F + I + Q +R ++G+ ILVATD+ RG+D+ER++ V+NYD+P ++Y+HR+GR GR G G A+ FVS Sbjct: 227 ISQSYIQVARKMDALTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVS 355
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DDX3_DROME (ATP-dependent RNA helicase bel OS=Drosophila melanogaster GN=bel PE=1 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.624e-17 Identity = 48/127 (37.80%), Postives = 71/127 (55.91%), Query Frame = 3 Query: 21 ELEKNRKLNDLLDAL-------DFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 380 E +K L DLL ++ + +IFV++ A L + L +CN P IH +Q+ER + F+ G+ ILVAT + RG+DI V VIN+D+P + Y+HR+GR GR G G+A +F Sbjct: 536 EPDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSF 662
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: RRP3_VANPO (ATP-dependent rRNA helicase RRP3 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=RRP3 PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.039e-17 Identity = 49/144 (34.03%), Postives = 83/144 (57.64%), Query Frame = 3 Query: 30 KNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 461 KN L L++ +++F ++ + A + L F + +H ++Q +R FK G + ILVATD+ RG+DI V+IVINYD+P + +Y+HRVGR R G G +I+ VS D +++ +++ +V K+LP++ Sbjct: 313 KNTYLIYLMNEFIGKTIIVFTRTKANAERITTLANLLEFSATALHGDLNQNQRTGSLDLFKAGRRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ-YDLELILRIE---DVLGKKLPKE 452
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: ROK1_DEBHA (ATP-dependent RNA helicase ROK1 OS=Debaryomyces hansenii GN=ROK1 PE=3 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 6.039e-17 Identity = 43/110 (39.09%), Postives = 67/110 (60.91%), Query Frame = 3 Query: 78 VVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDI 407 ++IF++S +RA L L+ IH+ + ++R K FK G+ +L+ TD++ RG+D + VN+VINYD+P SA Y+HR+GR GR G G A+TF + D + Sbjct: 364 IIIFLQSITRAKALFHELLYDRLNVDVIHAERTPKQRDEVIKRFKSGDIWVLITTDVIARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRGGKAGKAVTFFTKEDDKAV 473
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: ROK1_CANAL (ATP-dependent RNA helicase CHR1 OS=Candida albicans GN=CHR1 PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.039e-17 Identity = 44/110 (40.00%), Postives = 67/110 (60.91%), Query Frame = 3 Query: 78 VVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDI 407 ++IF++S +RA L L+ IH+ + ++R K FK G+ +L+ TD++ RG+D + VN+VINYD+P SA Y+HR+GR GR G G A+TF + D I Sbjct: 381 IIIFLQSITRAKALFHELLYDRLNVDVIHAERTPKQREEVIKRFKNGDIWVLITTDVLARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRGGKAGKAVTFFTKEDDKAI 490
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: RH35B_ORYSJ (DEAD-box ATP-dependent RNA helicase 35B OS=Oryza sativa subsp. japonica GN=Os06g0697200 PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.039e-17 Identity = 45/125 (36.00%), Postives = 70/125 (56.00%), Query Frame = 3 Query: 78 VVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKEL 452 V++F + + + + L+ ++ IH G EER +K FK K +LVATD+ +G+DI + VINYDMP + Y+HR+GR GR G G+A TF++ NQ + +D+K+L Sbjct: 427 VLVFCEHKADVDYIQEFLLLKGVEAVAIHGGKDDEERKDAFKSFKASEKDVLVATDVASKGLDIPDIQHVINYDMPAEIENYVHRIGRTGRRGKTGVATTFINK-------NQTETTL-LDLKQL 543
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: PRP5_ASPOR (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus oryzae GN=prp5 PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.039e-17 Identity = 56/162 (34.57%), Postives = 87/162 (53.70%), Query Frame = 3 Query: 18 SELEKNRKLNDLLDAL---DFNQ---VVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYMP 485 SE +K +L +LL L D N+ +IFV+ A L + L+ +P + IH G Q +R + + FK G +L+AT + RG+D++++ +V+NYD P+ + Y+HR GR GR G G A+TF L + Q R+ VDI + +Q S P Sbjct: 783 SEDKKFIRLLELLGNLYSTDENEDARALIFVERQEGADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTF---------LTEDQERYSVDIAKALKQSGQSVPEP 935 The following BLAST results are available for this feature:
BLAST of CX308748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX308748 ID=CX308748; Name=CX308748; organism=Citrus clementina; type=EST; length=702bpback to top |