CX308748
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DRS1_YEAST (ATP-dependent RNA helicase DRS1 OS=Saccharomyces cerevisiae GN=DRS1 PE=1 SV=2) HSP 1 Score: 87.4261 bits (215), Expect = 7.887e-17 Identity = 50/136 (36.76%), Postives = 72/136 (52.94%), Query Frame = 3 Query: 21 ELEKNRKLNDLLDALDFN-----------QVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 395 E + RK + L AL FN ++V+FV A L ++ +H ++QE+RL FK +L+ TDL RG+DI ++ +VINYDMP S + YLHRVGR R G +G ++TFV +S Sbjct: 452 EFVRIRKRDHLKPALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESS 587
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DRS1_YEAS7 (ATP-dependent RNA helicase DRS1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DRS1 PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 7.887e-17 Identity = 50/136 (36.76%), Postives = 72/136 (52.94%), Query Frame = 3 Query: 21 ELEKNRKLNDLLDALDFN-----------QVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 395 E + RK + L AL FN ++V+FV A L ++ +H ++QE+RL FK +L+ TDL RG+DI ++ +VINYDMP S + YLHRVGR R G +G ++TFV +S Sbjct: 454 EFVRIRKRDHLKPALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESS 589
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DRS1_USTMA (ATP-dependent RNA helicase DRS1 OS=Ustilago maydis GN=DRS1 PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 7.887e-17 Identity = 45/107 (42.06%), Postives = 62/107 (57.94%), Query Frame = 3 Query: 72 NQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSA 392 +Q +IFV+S A +L + + +H +SQE+R+ F++G L+ATDL RG+DI+ V VINYDMP + YLHRVGR R G G A+T V A Sbjct: 612 SQTMIFVRSKKLAHQLKIVFGLLGLSAGELHGDLSQEQRIDALTDFRDGKTDFLLATDLASRGLDIKGVQTVINYDMPGQFEAYLHRVGRTARAGRNGRAVTLVGEA 718
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DDX25_MOUSE (ATP-dependent RNA helicase DDX25 OS=Mus musculus GN=Ddx25 PE=1 SV=2) HSP 1 Score: 87.4261 bits (215), Expect = 7.887e-17 Identity = 47/153 (30.72%), Postives = 86/153 (56.21%), Query Frame = 3 Query: 30 KNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMP------DSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKEL-PEQID 467 K + L ++ + Q +IF ++ A L +++ + ++ E+R + + F++G +++L+ T++ RGID+++V IV+N+D+P +TYLHR+GR GRFG KGLA + +L ++Q F +IK+L PE +D Sbjct: 326 KYQALCNIYGGITIGQAIIFCQTRRNAKWLTVEMMQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVNQSEEPDYETYLHRIGRTGRFGKKGLAFNMI-EVDKLPLLMKIQDHFNSNIKQLDPEDMD 477
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: RRP3_PICST (ATP-dependent rRNA helicase RRP3 OS=Pichia stipitis GN=RRP3 PE=3 SV=3) HSP 1 Score: 87.0409 bits (214), Expect = 1.030e-16 Identity = 44/124 (35.48%), Postives = 70/124 (56.45%), Query Frame = 3 Query: 15 LSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 386 +S+ KN L LL+ ++IF ++ + + L F ++ +H ++Q +RL FK G IL+ATD+ RG+DI V++VINYD+P + Y+HRVGR R G G +I+ V+ Sbjct: 292 VSDGYKNTYLIHLLNEFVGKSIIIFARTRAHTQRTSILCRILGFSAVPLHGDLTQAQRLGSLNKFKSGTANILIATDVAARGLDIPSVDVVINYDIPTDSKAYVHRVGRTARAGRSGKSISLVT 415
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: RRP3_MAGGR (ATP-dependent rRNA helicase RRP3 OS=Magnaporthe grisea GN=RRP3 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.030e-16 Identity = 42/102 (41.18%), Postives = 65/102 (63.73%), Query Frame = 3 Query: 81 VIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 386 ++F ++ + A ++ LL +F +I +H +SQ RL FK ++ ILVATD+ RG+DI V++VIN+DMP + TY+HRVGR R G G AI+ ++ Sbjct: 354 IVFTRTVNEAQRVSILLRTLSFGAIPLHGQLSQSMRLGALNKFKARSRDILVATDVAARGLDIPEVDLVINFDMPQDSMTYIHRVGRTARAGRSGRAISIIT 455
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: RRP3_ASPCL (ATP-dependent rRNA helicase rrp3 OS=Aspergillus clavatus GN=rrp3 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.030e-16 Identity = 43/112 (38.39%), Postives = 67/112 (59.82%), Query Frame = 3 Query: 51 LLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 386 LL+ +IF ++ ++ LL F +I +H +SQ RL F+ ++ ILVATD+ RG+DI V++V+N+D+P + TY+HRVGR R G G+AI+FV+ Sbjct: 287 LLNEFVGQSAIIFTRTVHETQRISFLLRALGFGAIPLHGQLSQSSRLGALGKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVT 398
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: RH46_ARATH (DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana GN=RH46 PE=2 SV=2) HSP 1 Score: 87.0409 bits (214), Expect = 1.030e-16 Identity = 43/122 (35.25%), Postives = 67/122 (54.92%), Query Frame = 3 Query: 15 LSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 380 L+ +EK+ +L +L + + +I S R + + F + IH SQ ER F+ G +LVATD+ RG+D++ + +V+NYD P+ + Y+HR+GR GR G GLA TF Sbjct: 387 LAPMEKHSRLEQILRSQEPGSKIIIFCSTKRMCDQLARNLTRTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTF 508
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: RH40_ORYSJ (DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica GN=Os01g0549400 PE=2 SV=2) HSP 1 Score: 87.0409 bits (214), Expect = 1.030e-16 Identity = 48/119 (40.34%), Postives = 68/119 (57.14%), Query Frame = 3 Query: 27 EKNRKLNDLLDALDF-NQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 380 EK R+L +L + D ++V+IF + +L + L F + IH SQ ER F+ G ILVATD+ RG+DI+ + +VINYD P + Y+HR+GR GR G G+A TF Sbjct: 380 EKLRRLEQILRSQDSGSKVLIFCTTKRMCDQLARTLTR-QFGASAIHGDKSQSEREKVLSHFRSGRSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVAYTF 497
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: RH14_ARATH (DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana GN=RH14 PE=1 SV=2) HSP 1 Score: 87.0409 bits (214), Expect = 1.030e-16 Identity = 53/157 (33.76%), Postives = 81/157 (51.59%), Query Frame = 3 Query: 3 HYIKLSELEKNRKLNDLLDALD-FNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSS-----ASD-SDILNQVQARFEVDIKEL 452 H ++ +EK R+L +L + + ++V+IF + +L + L F + IH SQ ER F+ G +LVATD+ RG+D++ + V+NYD P+ + Y+HR+GR GR G G A TF ASD IL R I+E+ Sbjct: 380 HIEVVAPMEKQRRLEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTR-QFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIREM 535 The following BLAST results are available for this feature:
BLAST of CX308748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX308748 ID=CX308748; Name=CX308748; organism=Citrus clementina; type=EST; length=702bpback to top |