CX308748

Overview
NameCX308748
Unique NameCX308748
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_YEAS7 (ATP-dependent RNA helicase eIF4A OS=Saccharomyces cerevisiae (strain YJM789) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.931e-28
Identity = 64/156 (41.03%), Postives = 97/156 (62.18%), Query Frame = 3
Query:    6 YIKLSELE-KNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDT 470
            Y+ + E E K   L DL D++   Q VIF  +  +  EL   L    F    I+S + Q+ER T  K F+ G+ RIL++TDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV++  D   + +++  +   I+ELP  I T
Sbjct:  238 YVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTN-EDVGAMRELEKFYSTQIEELPSDIAT 392          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_TRYBB (Probable eukaryotic initiation factor 4A OS=Trypanosoma brucei brucei GN=Tb09.160.3270 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.931e-28
Identity = 64/159 (40.25%), Postives = 96/159 (60.38%), Query Frame = 3
Query:    6 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482
            +I + E  K   L DL + +   Q VIF  +  +   L   L   N    C+HS MS++ER      F+ G+ R+LV TDLV RGID+  VNIVIN+D+P + + YLHR+GR GR+G KG+AI FV+   D ++L ++++ +   I+ELP  +D + Y+
Sbjct:  247 FIAVEEEHKLDTLMDLYETVSIAQSVIFANTRRKVDWLASQLNSSNHTVSCMHSEMSKQEREKVMGTFRNGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGRKGVAINFVTQ-KDVEVLREIESHYHTQIEELP--VDFAAYL 402          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DHH1_KLULA (ATP-dependent RNA helicase DHH1 OS=Kluyveromyces lactis GN=DHH1 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.931e-28
Identity = 66/159 (41.51%), Postives = 93/159 (58.49%), Query Frame = 3
Query:    6 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482
            Y  + E +K   LN L   L  NQ +IF  S +R   L K + E  F     H+ M Q ER   +  F++G  R LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG  GLAI  + + +D   L +++     +I  +P QID S Y+
Sbjct:  252 YAFVEEKQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITELGFSCYYSHARMKQSERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLI-NWNDRFNLYKIEQELNTEIAPIPSQIDKSLYV 409          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_TRYCR (Probable eukaryotic initiation factor 4A OS=Trypanosoma cruzi GN=Tc00.1047053511585.190 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.694e-27
Identity = 62/160 (38.75%), Postives = 98/160 (61.25%), Query Frame = 3
Query:    3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482
            ++I + E  K   L DL + +   Q VIF  +  +   L + L + N    C+HS M +++R      F+ G+ R+LV TDLV RGID+  VNIVIN+D+P + ++YLHR+GR GR+G KG+AI FV+   D ++L ++++ +   I ELP  +D + Y+
Sbjct:  246 YFIAVEEEHKLDTLMDLYETVSIAQSVIFANTRRKVDWLAQQLNQSNHTVSCMHSEMPKQDREKVMSTFRNGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKESYLHRIGRGGRYGRKGVAINFVTQ-KDVEVLREIESHYHTQIDELP--VDFAAYL 402          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_CAEEL (Eukaryotic initiation factor 4A OS=Caenorhabditis elegans GN=inf-1 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.694e-27
Identity = 56/141 (39.72%), Postives = 93/141 (65.96%), Query Frame = 3
Query:   42 LNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464
            L DL + ++  Q VIF  +  +   L + + E  F   C+H  M Q ER T  + F+ G+ R+L+ TD++ RGID+++V++VINYD+P + + Y+HR+GR+GRFG KG+AI FV+  +D+  L ++++ +   I+E+PE I
Sbjct:  259 LCDLYNVVNVTQAVIFCNTRRKVDTLTEKMTENQFTVSCLHGDMDQAERDTIMREFRSGSSRVLITTDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTE-NDARQLKEIESYYTTQIEEMPESI 398          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DHH1_PICGU (ATP-dependent RNA helicase DHH1 OS=Pichia guilliermondii GN=DHH1 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.212e-27
Identity = 64/159 (40.25%), Postives = 92/159 (57.86%), Query Frame = 3
Query:    6 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482
            Y  + E +K   LN L   L  NQ +IF  S +R   L K + E  +     H+ M Q+ R   +  F++G+ R LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG  GLAI F+       + N ++     +IK +P  ID S Y+
Sbjct:  245 YAFVEEKQKLHCLNTLFSKLKINQAIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGSVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINFIHWDDRKSLFN-IETELGTEIKPIPSDIDRSLYV 402          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_ASHGO (ATP-dependent RNA helicase eIF4A OS=Ashbya gossypii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.890e-27
Identity = 63/155 (40.65%), Postives = 99/155 (63.87%), Query Frame = 3
Query:    3 HYIKL-SELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464
            +YI + SE  K   L+DL D++   Q VIF  +  +  EL K L + +F    I+S + Q +R T  K F+ G+ RIL++TDL+ RGID+++V++VINYD+P++ + Y+HR+GR GRFG KG+AI  V+     D + +++  +   I+ELP  I
Sbjct:  238 YYINVESEEYKYDCLSDLYDSISVTQAVIFCNTRRKVEELTKRLTDDSFTVSAIYSDLPQAQRDTIMKEFRTGSSRILISTDLLARGIDVQQVSLVINYDLPNNKENYIHRIGRGGRFGRKGVAINLVTDRDVGD-MRELERFYSTQIEELPANI 391          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: RH6_ORYSJ (DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa subsp. japonica GN=Os04g0533000 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.774e-27
Identity = 67/158 (42.41%), Postives = 91/158 (57.59%), Query Frame = 3
Query:    6 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTY 479
            Y  + E +K   LN L   L  NQ +IF  S +R   L K + E  +    IH+ M Q+ R   +  F+ G  R LV TDL  RGIDI+ VN+VIN+D P SA+TYLHRVGR+GRFG  GLA+  + +  D   L +++     +IK +P QID + Y
Sbjct:  340 YAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKSAETYLHRVGRSGRFGHLGLAVNLI-TYEDRFNLYRIEQELGTEIKPIPPQIDRAIY 496          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DHH1_SCHPO (Putative ATP-dependent RNA helicase ste13 OS=Schizosaccharomyces pombe GN=ste13 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.774e-27
Identity = 66/160 (41.25%), Postives = 95/160 (59.38%), Query Frame = 3
Query:    3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482
            +Y  + E +K   LN L   L  NQ +IF  S +R   L K + E  +     H+ M Q  R   +  F+ G  R LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG +GLAI+F+S A D   L +++     +I+ +P  ID S Y+
Sbjct:  259 YYAFVDESQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFISWA-DRFNLYRIENELGTEIQPIPPSIDPSLYV 417          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DHH1_ASHGO (ATP-dependent RNA helicase DHH1 OS=Ashbya gossypii GN=DHH1 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.774e-27
Identity = 64/160 (40.00%), Postives = 95/160 (59.38%), Query Frame = 3
Query:    3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482
            +Y  + E +K   LN L   L  NQ +IF  S +R   L K + +  +     H+ M Q+ER   +  F++G  R LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG  GLAI  + + +D   L +++     +I  +P QID S Y+
Sbjct:  244 YYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLI-NWNDRFNLYKIEQELGTEIAAIPAQIDKSLYV 402          
The following BLAST results are available for this feature:
BLAST of CX308748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A_YEAS79.931e-2841.03ATP-dependent RNA helicase eIF4A OS=Saccharomyces ... [more]
IF4A_TRYBB9.931e-2840.25Probable eukaryotic initiation factor 4A OS=Trypan... [more]
DHH1_KLULA9.931e-2841.51ATP-dependent RNA helicase DHH1 OS=Kluyveromyces l... [more]
IF4A_TRYCR1.694e-2738.75Probable eukaryotic initiation factor 4A OS=Trypan... [more]
IF4A_CAEEL1.694e-2739.72Eukaryotic initiation factor 4A OS=Caenorhabditis ... [more]
DHH1_PICGU2.212e-2740.25ATP-dependent RNA helicase DHH1 OS=Pichia guillier... [more]
IF4A_ASHGO2.890e-2740.65ATP-dependent RNA helicase eIF4A OS=Ashbya gossypi... [more]
RH6_ORYSJ3.774e-2742.41DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sat... [more]
DHH1_SCHPO3.774e-2741.25Putative ATP-dependent RNA helicase ste13 OS=Schiz... [more]
DHH1_ASHGO3.774e-2740.00ATP-dependent RNA helicase DHH1 OS=Ashbya gossypii... [more]

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Properties
Property NameValue
Genbank descriptionC21003D05Rv AbsLeaSub1 Citrus clementina cDNA clone C21003D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308748 ID=CX308748; Name=CX308748; organism=Citrus clementina; type=EST; length=702bp
AGCACTACATCAAATTGAGTGAGCTGGAGAAAAATCGGAAGTTGAATGAT
CTCCTTGATGCATTGGACTTTAATCAAGTTGTTATCTTTGTCAAAAGTGC
TAGCCGAGCAGCGGAGTTAAACAAGTTACTTGTAGAATGCAATTTTCCTT
CTATATGCATCCATTCTGGCATGTCCCAAGAAGAAAGGTTGACGCGTTAC
AAAGGTTTCAAGGAGGGGAACAAGAGGATTCTTGTGGCCACAGATTTGGT
TGGTAGGGGAATTGACATTGAGCGTGTCAACATTGTCATCAATTATGACA
TGCCAGATTCTGCTGATACTTATCTGCACAGGGTTGGTAGAGCTGGTAGG
TTTGGCACCAAGGGCCTTGCAATTACTTTTGTATCATCTGCTTCAGACTC
CGATATTCTCAATCAGGTTCAGGCAAGGTTTGAAGTAGATATAAAGGAGC
TTCCTGAGCAGATTGATACATCTACATACATGCCATCATAGTGGAGATCT
GTTCTCTGATGTGGAAAATTTGAGGCGCATGTGGAAGCAGGGTGCTGAAG
GCCCTTTATGTATTTGTTTCTTTAGATGAAGTCCAATGGCTTTCATATAT
GTTGCCTTGGAGATTTGTCAGATGGATCCCTCTATTTTGTGGTTTTACGC
TGCCTTTTCTTGTTTTTGGGATTTGTAGCCTTTTATACCTTCTGGGTACC
CT
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