CX308756

Overview
NameCX308756
Unique NameCX308756
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length251
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBC12_SCHPO (NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomyces pombe GN=ubc12 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.460e-14
Identity = 30/75 (40.00%), Postives = 51/75 (68.00%), Query Frame = -1
Query:   27 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAA 251
            FK  +Q  ++YP+ PP V+ +++++HPNI  +G++CL+IL+  W+P+ ++ +IL  +Q L   PN   P N EAA
Sbjct:   70 FKFRIQIDDNYPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWNPVLNLNSILVGLQFLFLSPNAEDPLNKEAA 144          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UB2G1_RAT (Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norvegicus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 2.460e-14
Identity = 35/95 (36.84%), Postives = 59/95 (62.11%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            FK  L F +DYP +PP ++F++ ++HPN+  +G +C+ IL             + +W PI+ V  I+ S+ S+L DPN +SPAN +AA+ + E++
Sbjct:   55 FKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDR 149          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UB2G1_MOUSE (Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 2.460e-14
Identity = 35/95 (36.84%), Postives = 59/95 (62.11%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            FK  L F +DYP +PP ++F++ ++HPN+  +G +C+ IL             + +W PI+ V  I+ S+ S+L DPN +SPAN +AA+ + E++
Sbjct:   55 FKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDR 149          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UB2G1_MACFA (Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fascicularis GN=UBE2G1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.460e-14
Identity = 35/95 (36.84%), Postives = 59/95 (62.11%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            FK  L F +DYP +PP ++F++ ++HPN+  +G +C+ IL             + +W PI+ V  I+ S+ S+L DPN +SPAN +AA+ + E++
Sbjct:   55 FKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEGRWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDR 149          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UB2G1_HUMAN (Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens GN=UBE2G1 PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 2.460e-14
Identity = 35/95 (36.84%), Postives = 59/95 (62.11%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            FK  L F +DYP +PP ++F++ ++HPN+  +G +C+ IL             + +W PI+ V  I+ S+ S+L DPN +SPAN +AA+ + E++
Sbjct:   55 FKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDR 149          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBE2T_MOUSE (Ubiquitin-conjugating enzyme E2 T OS=Mus musculus GN=Ube2t PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.212e-14
Identity = 37/86 (43.02%), Postives = 54/86 (62.79%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL----QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            F L +   E YP +PP VRF++ ++HPNI + G ICLDIL    +  W P  ++A +LTSIQ L+ +PNP+ P  ++ +  F  NK
Sbjct:   51 FTLEVIIPERYPFEPPQVRFLTPIYHPNIDSSGRICLDILKLPPKGAWRPSLNIATVLTSIQLLMAEPNPDDPLMADISSEFKYNK 136          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBCB_DICDI (Ubiquitin conjugating enzyme E2 B OS=Dictyostelium discoideum GN=ubcB PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.212e-14
Identity = 33/83 (39.76%), Postives = 57/83 (68.67%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            F + +    DYP KPPT++F ++++HPNI  +DG+IC ++  + WSP   +  +LT+I+S+L DPNP++P  +E A+ F  ++
Sbjct:   51 FSMDIDIPADYPFKPPTLKFTTKIYHPNIKTSDGAICAEVF-STWSPQLKILDVLTTIRSILTDPNPDNPLETEIAQQFKTDR 132          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBC9_MESAU (SUMO-conjugating enzyme UBC9 OS=Mesocricetus auratus GN=UBE2I PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.212e-14
Identity = 33/84 (39.29%), Postives = 50/84 (59.52%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  +   IQ LL +PN   PA +EA  ++ +N+
Sbjct:   58 FKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITINQLFIGIQELLNEPNIQEPAQAEAYTIYCQNR 141          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBC12_XENTR (NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropicalis GN=ube2m PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.195e-14
Identity = 30/83 (36.14%), Postives = 51/83 (61.45%), Query Frame = -1
Query:    3 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKR 251
            F  + +  + YP+ PP V+  + ++HPNI  +G++CL+IL+  W P+  + +I+  +Q L  +PNP  P N EAA +   N+R
Sbjct:   76 FVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRR 158          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBC12_XENLA (NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis GN=ube2m PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.195e-14
Identity = 30/83 (36.14%), Postives = 51/83 (61.45%), Query Frame = -1
Query:    3 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKR 251
            F  + +  + YP+ PP V+  + ++HPNI  +G++CL+IL+  W P+  + +I+  +Q L  +PNP  P N EAA +   N+R
Sbjct:   76 FVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRR 158          
The following BLAST results are available for this feature:
BLAST of CX308756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
UBC12_SCHPO2.460e-1440.00NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomy... [more]
UB2G1_RAT2.460e-1436.84Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norve... [more]
UB2G1_MOUSE2.460e-1436.84Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus... [more]
UB2G1_MACFA2.460e-1436.84Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fasci... [more]
UB2G1_HUMAN2.460e-1436.84Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens... [more]
UBE2T_MOUSE3.212e-1443.02Ubiquitin-conjugating enzyme E2 T OS=Mus musculus ... [more]
UBCB_DICDI3.212e-1439.76Ubiquitin conjugating enzyme E2 B OS=Dictyostelium... [more]
UBC9_MESAU3.212e-1439.29SUMO-conjugating enzyme UBC9 OS=Mesocricetus aurat... [more]
UBC12_XENTR4.195e-1436.14NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropical... [more]
UBC12_XENLA4.195e-1436.14NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis G... [more]

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Properties
Property NameValue
Genbank descriptionC21003E02Rv AbsLeaSub1 Citrus clementina cDNA clone C21003E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308756 ID=CX308756; Name=CX308756; organism=Citrus clementina; type=EST; length=251bp
TCTCTCTTATTCTCACTGAACAGCCGAGCTGCTTCAGAGTTTGCAGGAGA
GTTTGGATTTGGATCACAAAGCAGAGACTGAATAGAGGTCAGTATAGCTG
CAACATCATATATAGGACTCCACTGATTTTGTAAAATATCCAAACAAATA
CTTCCATCTGCATAGATATTTGGATGAAACATCCGTGAGACGAAACGAAC
TGTTGGGGGTTTATTTGGATAATCCTCTGTGAATTGTAGAGTCAACTTGA
A
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