CX308756

Overview
NameCX308756
Unique NameCX308756
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length251
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBC12_MOUSE (NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=Ube2m PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.195e-14
Identity = 30/83 (36.14%), Postives = 51/83 (61.45%), Query Frame = -1
Query:    3 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKR 251
            F  + +  + YP+ PP V+  + ++HPNI  +G++CL+IL+  W P+  + +I+  +Q L  +PNP  P N EAA +   N+R
Sbjct:   76 FVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRR 158          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBC12_HUMAN (NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=UBE2M PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.195e-14
Identity = 30/83 (36.14%), Postives = 51/83 (61.45%), Query Frame = -1
Query:    3 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKR 251
            F  + +  + YP+ PP V+  + ++HPNI  +G++CL+IL+  W P+  + +I+  +Q L  +PNP  P N EAA +   N+R
Sbjct:   76 FVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRR 158          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBC12_DICDI (NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium discoideum GN=ube2m PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.195e-14
Identity = 29/83 (34.94%), Postives = 51/83 (61.45%), Query Frame = -1
Query:    3 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKR 251
            F+ T+     YP  PP V   + ++HPNI  +G +CL+IL+  W P+ ++  ++  + +L  +PNP+ P N +AA+L  +NK+
Sbjct:  124 FQFTINIPSTYPYDPPKVHCDTLVYHPNIDLEGHVCLNILRQDWMPVLNIGTVIFGLMTLFLEPNPDDPLNKDAAQLMIDNKK 206          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBC12_BOVIN (NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UBE2M PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.195e-14
Identity = 30/83 (36.14%), Postives = 51/83 (61.45%), Query Frame = -1
Query:    3 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKR 251
            F  + +  + YP+ PP V+  + ++HPNI  +G++CL+IL+  W P+  + +I+  +Q L  +PNP  P N EAA +   N+R
Sbjct:   76 FVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRR 158          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBC15_SCHPO (Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccharomyces pombe GN=ubc15 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.479e-14
Identity = 35/94 (37.23%), Postives = 53/94 (56.38%), Query Frame = -1
Query:    9 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSEN 251
            F  TL F +DYP  PP ++F + ++HPN++ +G +C+ IL               +W P++    IL S+ S+L  PN  SPAN +AA+ F EN
Sbjct:   55 FHATLSFPQDYPLMPPKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILISVISMLSSPNDESPANIDAAKEFREN 148          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UB2E3_MOUSE (Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus GN=Ube2e3 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.156e-14
Identity = 37/82 (45.12%), Postives = 50/82 (60.98%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            F L + F+ DYP KPP V F +R++H NI + G ICLDIL++ WSP   ++ +L SI SLL D NP  P     A  +  N+
Sbjct:  110 FFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNR 191          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UB2E3_HUMAN (Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens GN=UBE2E3 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.156e-14
Identity = 37/82 (45.12%), Postives = 50/82 (60.98%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            F L + F+ DYP KPP V F +R++H NI + G ICLDIL++ WSP   ++ +L SI SLL D NP  P     A  +  N+
Sbjct:  110 FFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNR 191          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UB2E3_BOVIN (Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus GN=UBE2E3 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.156e-14
Identity = 37/82 (45.12%), Postives = 50/82 (60.98%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            F L + F+ DYP KPP V F +R++H NI + G ICLDIL++ WSP   ++ +L SI SLL D NP  P     A  +  N+
Sbjct:  110 FFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNR 191          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UB2E2_MOUSE (Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus GN=Ube2e2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.156e-14
Identity = 37/82 (45.12%), Postives = 50/82 (60.98%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            F L + F+ DYP KPP V F +R++H NI + G ICLDIL++ WSP   ++ +L SI SLL D NP  P     A  +  N+
Sbjct:  104 FFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNR 185          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UB2E2_HUMAN (Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens GN=UBE2E2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.156e-14
Identity = 37/82 (45.12%), Postives = 50/82 (60.98%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            F L + F+ DYP KPP V F +R++H NI + G ICLDIL++ WSP   ++ +L SI SLL D NP  P     A  +  N+
Sbjct:  104 FFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNR 185          
The following BLAST results are available for this feature:
BLAST of CX308756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
UBC12_MOUSE4.195e-1436.14NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=... [more]
UBC12_HUMAN4.195e-1436.14NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=... [more]
UBC12_DICDI4.195e-1434.94NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium di... [more]
UBC12_BOVIN4.195e-1436.14NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UB... [more]
UBC15_SCHPO5.479e-1437.23Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccha... [more]
UB2E3_MOUSE7.156e-1445.12Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus... [more]
UB2E3_HUMAN7.156e-1445.12Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens... [more]
UB2E3_BOVIN7.156e-1445.12Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus G... [more]
UB2E2_MOUSE7.156e-1445.12Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus... [more]
UB2E2_HUMAN7.156e-1445.12Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionC21003E02Rv AbsLeaSub1 Citrus clementina cDNA clone C21003E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308756 ID=CX308756; Name=CX308756; organism=Citrus clementina; type=EST; length=251bp
TCTCTCTTATTCTCACTGAACAGCCGAGCTGCTTCAGAGTTTGCAGGAGA
GTTTGGATTTGGATCACAAAGCAGAGACTGAATAGAGGTCAGTATAGCTG
CAACATCATATATAGGACTCCACTGATTTTGTAAAATATCCAAACAAATA
CTTCCATCTGCATAGATATTTGGATGAAACATCCGTGAGACGAAACGAAC
TGTTGGGGGTTTATTTGGATAATCCTCTGTGAATTGTAGAGTCAACTTGA
A
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