CX308756

Overview
NameCX308756
Unique NameCX308756
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length251
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBE2S_DROWI (Ubiquitin-conjugating enzyme E2 S OS=Drosophila willistoni GN=GK16201 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.082e-13
Identity = 31/80 (38.75%), Postives = 50/80 (62.50%), Query Frame = -1
Query:   12 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSE 251
            F++ L  ++D+P  PP   F++++FHPN+ A+G IC++ L+  W P   +  IL +I+ LL  PNP S  N EA ++  E
Sbjct:   63 FRVKLTLSKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLE 142          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBE2S_DROMO (Ubiquitin-conjugating enzyme E2 S OS=Drosophila mojavensis GN=GI11085 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.082e-13
Identity = 31/80 (38.75%), Postives = 50/80 (62.50%), Query Frame = -1
Query:   12 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSE 251
            F++ L  ++D+P  PP   F++++FHPN+ A+G IC++ L+  W P   +  IL +I+ LL  PNP S  N EA ++  E
Sbjct:   63 FRVKLTLSKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLE 142          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBE2T_XENLA (Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevis GN=ube2t PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.719e-13
Identity = 34/86 (39.53%), Postives = 54/86 (62.79%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL----QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            F L +   E YP +PP +RF++ ++HPNI + G ICLDIL    +  W P  +++ +LTSIQ L+ +PNP+ P  ++ +  F  N+
Sbjct:   51 FNLEIIVPERYPFEPPKIRFLTPIYHPNIDSAGRICLDILKLPPKGAWRPALNISTVLTSIQLLMSEPNPDDPLMADISSEFKYNR 136          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBE2S_DROYA (Ubiquitin-conjugating enzyme E2 S OS=Drosophila yakuba GN=GE15576 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.719e-13
Identity = 31/80 (38.75%), Postives = 49/80 (61.25%), Query Frame = -1
Query:   12 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSE 251
            F++ L   +D+P  PP   F++++FHPN+ A+G IC++ L+  W P   +  IL +I+ LL  PNP S  N EA ++  E
Sbjct:   63 FRVKLTLNKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLE 142          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBE2S_DROER (Ubiquitin-conjugating enzyme E2 S OS=Drosophila erecta GN=GG18165 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.719e-13
Identity = 31/80 (38.75%), Postives = 49/80 (61.25%), Query Frame = -1
Query:   12 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSE 251
            F++ L   +D+P  PP   F++++FHPN+ A+G IC++ L+  W P   +  IL +I+ LL  PNP S  N EA ++  E
Sbjct:   63 FRVKLTLNKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLE 142          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBE2S_DROAN (Ubiquitin-conjugating enzyme E2 S OS=Drosophila ananassae GN=GF21161 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.719e-13
Identity = 31/80 (38.75%), Postives = 49/80 (61.25%), Query Frame = -1
Query:   12 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSE 251
            F++ L   +D+P  PP   F++++FHPN+ A+G IC++ L+  W P   +  IL +I+ LL  PNP S  N EA ++  E
Sbjct:   63 FRVKLTLNKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLE 142          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBC4_WHEAT (Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum aestivum GN=UBC4 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.719e-13
Identity = 33/84 (39.29%), Postives = 53/84 (63.10%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAIL-TSIQSLLCDPNPNSPANSEAARLFSENK 251
            +K+ ++ TE YP K P++ F ++++HPN+    GS+CLD++   WSP++D+  I    +  LL  PNP+ P N EAA L   +K
Sbjct:   49 WKVRVELTEAYPYKSPSIGFTNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNIFEVFLPQLLLYPNPSDPLNGEAASLMMRDK 132          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBE2S_DROVI (Ubiquitin-conjugating enzyme E2 S OS=Drosophila virilis GN=GJ15767 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.639e-13
Identity = 30/80 (37.50%), Postives = 50/80 (62.50%), Query Frame = -1
Query:   12 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSE 251
            F++ L  ++D+P  PP   F++++FHPN+ ++G IC++ L+  W P   +  IL +I+ LL  PNP S  N EA ++  E
Sbjct:   63 FRVKLTLSKDFPQTPPKAYFLTKIFHPNVASNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLE 142          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBE2S_DROGR (Ubiquitin-conjugating enzyme E2 S OS=Drosophila grimshawi GN=GH12079 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.639e-13
Identity = 30/80 (37.50%), Postives = 50/80 (62.50%), Query Frame = -1
Query:   12 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSE 251
            F++ L  ++D+P  PP   F++++FHPN+ ++G IC++ L+  W P   +  IL +I+ LL  PNP S  N EA ++  E
Sbjct:   63 FRVKLTLSKDFPQTPPKAYFLTKIFHPNVASNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLE 142          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBC7_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC7 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.639e-13
Identity = 35/95 (36.84%), Postives = 52/95 (54.74%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            F   L+F +DYP  PP + F   + HPNIY +G +C+ IL             + +WSP+  V  IL S+ S+L +PN  S AN +A  L+ +N+
Sbjct:   54 FNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNR 148          
The following BLAST results are available for this feature:
BLAST of CX308756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
UBE2S_DROWI2.082e-1338.75Ubiquitin-conjugating enzyme E2 S OS=Drosophila wi... [more]
UBE2S_DROMO2.082e-1338.75Ubiquitin-conjugating enzyme E2 S OS=Drosophila mo... [more]
UBE2T_XENLA2.719e-1339.53Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevi... [more]
UBE2S_DROYA2.719e-1338.75Ubiquitin-conjugating enzyme E2 S OS=Drosophila ya... [more]
UBE2S_DROER2.719e-1338.75Ubiquitin-conjugating enzyme E2 S OS=Drosophila er... [more]
UBE2S_DROAN2.719e-1338.75Ubiquitin-conjugating enzyme E2 S OS=Drosophila an... [more]
UBC4_WHEAT2.719e-1339.29Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum... [more]
UBE2S_DROVI4.639e-1337.50Ubiquitin-conjugating enzyme E2 S OS=Drosophila vi... [more]
UBE2S_DROGR4.639e-1337.50Ubiquitin-conjugating enzyme E2 S OS=Drosophila gr... [more]
UBC7_YEAST4.639e-1336.84Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]

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Properties
Property NameValue
Genbank descriptionC21003E02Rv AbsLeaSub1 Citrus clementina cDNA clone C21003E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308756 ID=CX308756; Name=CX308756; organism=Citrus clementina; type=EST; length=251bp
TCTCTCTTATTCTCACTGAACAGCCGAGCTGCTTCAGAGTTTGCAGGAGA
GTTTGGATTTGGATCACAAAGCAGAGACTGAATAGAGGTCAGTATAGCTG
CAACATCATATATAGGACTCCACTGATTTTGTAAAATATCCAAACAAATA
CTTCCATCTGCATAGATATTTGGATGAAACATCCGTGAGACGAAACGAAC
TGTTGGGGGTTTATTTGGATAATCCTCTGTGAATTGTAGAGTCAACTTGA
A
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