CX308756

Overview
NameCX308756
Unique NameCX308756
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length251
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBC6_ARATH (Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis thaliana GN=UBC6 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.639e-13
Identity = 32/84 (38.10%), Postives = 55/84 (65.48%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTS-IQSLLCDPNPNSPANSEAARLFSENK 251
            +K+ ++  E YP K P+V FV++++HPN+  + G++CLD++   WSP++D+  +  S +  LL  PNP+ P N EAA L   ++
Sbjct:   49 WKIKVELPEAYPYKSPSVGFVNKIYHPNVDESSGAVCLDVINQTWSPMFDLINVFESFLPQLLLYPNPSDPFNGEAASLLMRDR 132          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBE2S_RAT (Ubiquitin-conjugating enzyme E2 S OS=Rattus norvegicus GN=Ube2s PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.058e-13
Identity = 31/81 (38.27%), Postives = 50/81 (61.73%), Query Frame = -1
Query:    9 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSEN 251
            F++ L   +D+P  PP   F++++FHPN+  +G IC+++L+  W+    +  +L +I+ LL  PNP S  N EA RL  EN
Sbjct:   60 FRMKLLLGKDFPASPPKGYFLTKIFHPNVGPNGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLEN 140          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBE2S_RANCA (Ubiquitin-conjugating enzyme E2 S OS=Rana catesbeiana GN=ube2s PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.058e-13
Identity = 31/81 (38.27%), Postives = 50/81 (61.73%), Query Frame = -1
Query:    9 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSEN 251
            F++ L   +D+P  PP   F++++FHPN+ ++G IC+++L+  W     +  +L +I+ LL  PNP S  N EA RL  EN
Sbjct:   60 FRMKLILGKDFPAAPPKGYFLTKIFHPNVSSNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLEN 140          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBE2S_MOUSE (Ubiquitin-conjugating enzyme E2 S OS=Mus musculus GN=Ube2s PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.058e-13
Identity = 31/81 (38.27%), Postives = 50/81 (61.73%), Query Frame = -1
Query:    9 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSEN 251
            F++ L   +D+P  PP   F++++FHPN+  +G IC+++L+  W+    +  +L +I+ LL  PNP S  N EA RL  EN
Sbjct:   60 FRMKLLLGKDFPASPPKGYFLTKIFHPNVGPNGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLEN 140          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBE2S_DROSI (Ubiquitin-conjugating enzyme E2 S OS=Drosophila simulans GN=GD17343 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.058e-13
Identity = 31/80 (38.75%), Postives = 49/80 (61.25%), Query Frame = -1
Query:   12 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSE 251
            F++ L   +D+P  PP   F++++FHPN+ A+G IC++ L+  W P   +  IL +I+ LL  PNP S  N EA ++  E
Sbjct:   63 FRVKLTLNKDFPLTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLE 142          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBE2S_DROSE (Ubiquitin-conjugating enzyme E2 S OS=Drosophila sechellia GN=GM13299 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.058e-13
Identity = 31/80 (38.75%), Postives = 49/80 (61.25%), Query Frame = -1
Query:   12 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSE 251
            F++ L   +D+P  PP   F++++FHPN+ A+G IC++ L+  W P   +  IL +I+ LL  PNP S  N EA ++  E
Sbjct:   63 FRVKLTLNKDFPLTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLE 142          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBE2S_DROPS (Ubiquitin-conjugating enzyme E2 S OS=Drosophila pseudoobscura pseudoobscura GN=GA22810 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.058e-13
Identity = 30/80 (37.50%), Postives = 49/80 (61.25%), Query Frame = -1
Query:   12 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSE 251
            F++ L  ++D+P  PP   F++++FHPN+  +G IC++ L+  W P   +  IL +I+ LL  PNP S  N EA ++  E
Sbjct:   63 FRVKLTLSKDFPQTPPKAYFLTKIFHPNVAGNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLE 142          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBE2S_DROPE (Ubiquitin-conjugating enzyme E2 S OS=Drosophila persimilis GN=GL16001 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.058e-13
Identity = 30/80 (37.50%), Postives = 49/80 (61.25%), Query Frame = -1
Query:   12 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSE 251
            F++ L  ++D+P  PP   F++++FHPN+  +G IC++ L+  W P   +  IL +I+ LL  PNP S  N EA ++  E
Sbjct:   63 FRVKLTLSKDFPQTPPKAYFLTKIFHPNVAGNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLE 142          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBE2S_DROME (Ubiquitin-conjugating enzyme E2 S OS=Drosophila melanogaster GN=CG8188 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.058e-13
Identity = 31/80 (38.75%), Postives = 49/80 (61.25%), Query Frame = -1
Query:   12 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSE 251
            F++ L   +D+P  PP   F++++FHPN+ A+G IC++ L+  W P   +  IL +I+ LL  PNP S  N EA ++  E
Sbjct:   63 FRVKLTLNKDFPLTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLE 142          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBC5_ARATH (Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana GN=UBC5 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.058e-13
Identity = 31/84 (36.90%), Postives = 54/84 (64.29%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAIL-TSIQSLLCDPNPNSPANSEAARLFSENK 251
            +K+ ++  + YP K P+V F+++++HPN+    GS+CLD++   WSP++D+  +  T +  LL  PNP+ P N EAA L   ++
Sbjct:   49 WKIRVELPDAYPYKSPSVGFITKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPLNGEAAALMMRDR 132          
The following BLAST results are available for this feature:
BLAST of CX308756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
UBC6_ARATH4.639e-1338.10Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis t... [more]
UBE2S_RAT6.058e-1338.27Ubiquitin-conjugating enzyme E2 S OS=Rattus norveg... [more]
UBE2S_RANCA6.058e-1338.27Ubiquitin-conjugating enzyme E2 S OS=Rana catesbei... [more]
UBE2S_MOUSE6.058e-1338.27Ubiquitin-conjugating enzyme E2 S OS=Mus musculus ... [more]
UBE2S_DROSI6.058e-1338.75Ubiquitin-conjugating enzyme E2 S OS=Drosophila si... [more]
UBE2S_DROSE6.058e-1338.75Ubiquitin-conjugating enzyme E2 S OS=Drosophila se... [more]
UBE2S_DROPS6.058e-1337.50Ubiquitin-conjugating enzyme E2 S OS=Drosophila ps... [more]
UBE2S_DROPE6.058e-1337.50Ubiquitin-conjugating enzyme E2 S OS=Drosophila pe... [more]
UBE2S_DROME6.058e-1338.75Ubiquitin-conjugating enzyme E2 S OS=Drosophila me... [more]
UBC5_ARATH6.058e-1336.90Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionC21003E02Rv AbsLeaSub1 Citrus clementina cDNA clone C21003E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308756 ID=CX308756; Name=CX308756; organism=Citrus clementina; type=EST; length=251bp
TCTCTCTTATTCTCACTGAACAGCCGAGCTGCTTCAGAGTTTGCAGGAGA
GTTTGGATTTGGATCACAAAGCAGAGACTGAATAGAGGTCAGTATAGCTG
CAACATCATATATAGGACTCCACTGATTTTGTAAAATATCCAAACAAATA
CTTCCATCTGCATAGATATTTGGATGAAACATCCGTGAGACGAAACGAAC
TGTTGGGGGTTTATTTGGATAATCCTCTGTGAATTGTAGAGTCAACTTGA
A
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