CX308756

Overview
NameCX308756
Unique NameCX308756
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length251
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBC4_ARATH (Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana GN=UBC4 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.058e-13
Identity = 31/84 (36.90%), Postives = 54/84 (64.29%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAIL-TSIQSLLCDPNPNSPANSEAARLFSENK 251
            +K+ ++  + YP K P+V F+++++HPN+    GS+CLD++   WSP++D+  +  T +  LL  PNP+ P N EAA L   ++
Sbjct:   49 WKIRVELPDAYPYKSPSVGFITKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPLNGEAAALMMRDR 132          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBC12_YARLI (NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolytica GN=UBC12 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.058e-13
Identity = 26/82 (31.71%), Postives = 52/82 (63.41%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            F+ +     ++P++PP V+ + +++HPNI  +G++CL+IL+  W P+  + A++  +Q L  +PN + P N +AA   + N+
Sbjct:   71 FRFSFYVNPNFPHEPPKVKCLQKVYHPNIDLEGNVCLNILREDWKPVLSLNAVMIGLQYLFLEPNASDPLNKDAAHQMTANR 152          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UB2SA_XENLA (Ubiquitin-conjugating enzyme E2 S-A OS=Xenopus laevis GN=ube2s-A PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.058e-13
Identity = 31/81 (38.27%), Postives = 50/81 (61.73%), Query Frame = -1
Query:    9 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSEN 251
            F++ L   +D+P  PP   F++++FHPN+  +G IC+++L+  W+    +  +L +I+ LL  PNP S  N EA RL  EN
Sbjct:   60 FRMKLLLGKDFPASPPKGYFLTKIFHPNVGPNGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLEN 140          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBE2S_XENTR (Ubiquitin-conjugating enzyme E2 S OS=Xenopus tropicalis GN=ube2s PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.912e-13
Identity = 31/81 (38.27%), Postives = 49/81 (60.49%), Query Frame = -1
Query:    9 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSEN 251
            F++ L   +D+P  PP   F++++FHPN+  +G IC+++L+  W     +  +L +I+ LL  PNP S  N EA RL  EN
Sbjct:   60 FRMKLILGKDFPAAPPKGYFLTKIFHPNVSTNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLEN 140          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBC9_CAEEL (SUMO-conjugating enzyme UBC9 OS=Caenorhabditis elegans GN=ubc-9 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.912e-13
Identity = 29/84 (34.52%), Postives = 50/84 (59.52%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL--QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            +++ + F +D+P+ PP  +F   +FHPN+Y  G++CL +L     W P   +  +L  IQ LL  PN   PA +EA +++ +N+
Sbjct:   58 YRIRMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLLNHPNIEDPAQAEAYQIYCQNR 141          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBC12_ASHGO (NEDD8-conjugating enzyme UBC12 OS=Ashbya gossypii GN=UBC12 PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 7.912e-13
Identity = 28/75 (37.33%), Postives = 50/75 (66.67%), Query Frame = -1
Query:   27 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAA 251
            F+ ++ F + YP +PPTV+ ++ ++HPNI   G+ICL++L+  WSP+ D+  ++  +  L  +PN + P N +AA
Sbjct:   77 FRFSVVFRDTYPIEPPTVKCLNTIYHPNIDYSGNICLNVLREDWSPVMDLQTVVLGLLFLFLEPNGSDPLNRQAA 151          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBE2K_MOUSE (Ubiquitin-conjugating enzyme E2 K OS=Mus musculus GN=Ube2k PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 1.350e-12
Identity = 31/82 (37.80%), Postives = 54/82 (65.85%), Query Frame = -1
Query:    9 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSEN 251
            ++L ++  E YP  PP VRF+++++HPNI +  G+ICLDIL++QW+    +  +L S+Q+LL    P+ P ++  A  + +N
Sbjct:   56 YQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQN 137          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBE2K_HUMAN (Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens GN=UBE2K PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 1.350e-12
Identity = 31/82 (37.80%), Postives = 54/82 (65.85%), Query Frame = -1
Query:    9 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSEN 251
            ++L ++  E YP  PP VRF+++++HPNI +  G+ICLDIL++QW+    +  +L S+Q+LL    P+ P ++  A  + +N
Sbjct:   56 YQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQN 137          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBE2K_BOVIN (Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN=UBE2K PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 1.350e-12
Identity = 31/82 (37.80%), Postives = 54/82 (65.85%), Query Frame = -1
Query:    9 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSEN 251
            ++L ++  E YP  PP VRF+++++HPNI +  G+ICLDIL++QW+    +  +L S+Q+LL    P+ P ++  A  + +N
Sbjct:   56 YQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQN 137          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBC37_ARATH (Probable ubiquitin carrier protein E2 37 OS=Arabidopsis thaliana GN=UBC37 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.350e-12
Identity = 34/87 (39.08%), Postives = 52/87 (59.77%), Query Frame = -1
Query:    3 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL----QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKR 251
            F L +Q  E YP +PP V F + ++HPNI   G ICLDIL    +  W P  +++ +LTS++ LL +PNP+     E +R +  N++
Sbjct:   64 FNLKIQIPERYPFQPPIVSFATPIYHPNIDNSGRICLDILNLPPKGAWQPSLNISTVLTSMRLLLSEPNPDDGLMCEVSREYKYNRQ 150          
The following BLAST results are available for this feature:
BLAST of CX308756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
UBC4_ARATH6.058e-1336.90Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis t... [more]
UBC12_YARLI6.058e-1331.71NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolyt... [more]
UB2SA_XENLA6.058e-1338.27Ubiquitin-conjugating enzyme E2 S-A OS=Xenopus lae... [more]
UBE2S_XENTR7.912e-1338.27Ubiquitin-conjugating enzyme E2 S OS=Xenopus tropi... [more]
UBC9_CAEEL7.912e-1334.52SUMO-conjugating enzyme UBC9 OS=Caenorhabditis ele... [more]
UBC12_ASHGO7.912e-1337.33NEDD8-conjugating enzyme UBC12 OS=Ashbya gossypii ... [more]
UBE2K_MOUSE1.350e-1237.80Ubiquitin-conjugating enzyme E2 K OS=Mus musculus ... [more]
UBE2K_HUMAN1.350e-1237.80Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens ... [more]
UBE2K_BOVIN1.350e-1237.80Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN... [more]
UBC37_ARATH1.350e-1239.08Probable ubiquitin carrier protein E2 37 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionC21003E02Rv AbsLeaSub1 Citrus clementina cDNA clone C21003E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308756 ID=CX308756; Name=CX308756; organism=Citrus clementina; type=EST; length=251bp
TCTCTCTTATTCTCACTGAACAGCCGAGCTGCTTCAGAGTTTGCAGGAGA
GTTTGGATTTGGATCACAAAGCAGAGACTGAATAGAGGTCAGTATAGCTG
CAACATCATATATAGGACTCCACTGATTTTGTAAAATATCCAAACAAATA
CTTCCATCTGCATAGATATTTGGATGAAACATCCGTGAGACGAAACGAAC
TGTTGGGGGTTTATTTGGATAATCCTCTGTGAATTGTAGAGTCAACTTGA
A
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