CX308756

Overview
NameCX308756
Unique NameCX308756
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length251
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBCD4_DROME (Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophila melanogaster GN=UbcD4 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.143e-11
Identity = 32/81 (39.51%), Postives = 51/81 (62.96%), Query Frame = -1
Query:   12 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSE 251
            F L ++  E YP  PP VRF++R++HPNI +  G+ICLDIL++ W+    +  +L S+Q+LL    P+ P ++  A  F +
Sbjct:   56 FVLEIKVPETYPFNPPKVRFITRIWHPNISSVTGAICLDILKDNWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVAYQFKD 136          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBE2H_MOUSE (Ubiquitin-conjugating enzyme E2 H OS=Mus musculus GN=Ube2h PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.492e-11
Identity = 30/80 (37.50%), Postives = 51/80 (63.75%), Query Frame = -1
Query:   18 FKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTS-IQSLLCDPNPNSPANSEAARLF 251
            +K+ +   + YP K P++ F++++FHPNI  A G++CLD++   W+ +YD+  I  S +  LL  PNP  P N +AA ++
Sbjct:   51 WKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMY 130          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBE2H_HUMAN (Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens GN=UBE2H PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.492e-11
Identity = 30/80 (37.50%), Postives = 51/80 (63.75%), Query Frame = -1
Query:   18 FKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTS-IQSLLCDPNPNSPANSEAARLF 251
            +K+ +   + YP K P++ F++++FHPNI  A G++CLD++   W+ +YD+  I  S +  LL  PNP  P N +AA ++
Sbjct:   51 WKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMY 130          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBE2H_BOVIN (Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN=UBE2H PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.492e-11
Identity = 30/80 (37.50%), Postives = 51/80 (63.75%), Query Frame = -1
Query:   18 FKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTS-IQSLLCDPNPNSPANSEAARLF 251
            +K+ +   + YP K P++ F++++FHPNI  A G++CLD++   W+ +YD+  I  S +  LL  PNP  P N +AA ++
Sbjct:   51 WKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMY 130          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBC8_SCHPO (Ubiquitin-conjugating enzyme E2 8 OS=Schizosaccharomyces pombe GN=ubc8 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.492e-11
Identity = 33/79 (41.77%), Postives = 50/79 (63.29%), Query Frame = -1
Query:   21 FKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAIL-TSIQSLLCDPNPNSPANSEAARL 251
            +K+ ++   +YP K P++ FV+R+FHPNI    GS+CLD++   WSP++D+  I    +  LL  PN + P N EAA L
Sbjct:   49 WKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGSVCLDVINQTWSPMFDMINIFEVFLPQLLRYPNASDPLNGEAAAL 127          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: RCE1_ARATH (NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thaliana GN=RCE1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.492e-11
Identity = 26/83 (31.33%), Postives = 50/83 (60.24%), Query Frame = -1
Query:    3 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKR 251
            F  T Q +  YP++ P V+  ++++HPNI  +G++CL+IL+  W P+ ++  ++  +  L  +PN   P N +AA +  +N +
Sbjct:   78 FVFTFQVSPVYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNSEDPLNHDAAAVLRDNPK 160          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBC14_SCHPO (Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccharomyces pombe GN=ubc14 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.949e-11
Identity = 30/83 (36.14%), Postives = 52/83 (62.65%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            F  +L+F  DYP +PPT+ F +R++HPN  ++G++CL IL+ Q + P   + ++L  I  LL +PNP+ P  +  A  +  ++
Sbjct:   56 FHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQYRNDR 138          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBE2U_MACFA (Ubiquitin-conjugating enzyme E2 U OS=Macaca fascicularis GN=UBE2U PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.545e-11
Identity = 33/85 (38.82%), Postives = 55/85 (64.71%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQN--QWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            F+LT+ FT +Y   PP V+FV+  FHPN+    G  C+D L N  +W+  Y +++IL ++Q +L +P   +P N EAAR+ ++++
Sbjct:   53 FQLTIHFTSEYNYAPPVVKFVTIPFHPNVDPHTGQPCIDFLDNPKKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILTKDE 137          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBC21_CAEEL (Probable ubiquitin-conjugating enzyme E2 21 OS=Caenorhabditis elegans GN=ubc-21 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.545e-11
Identity = 33/97 (34.02%), Postives = 56/97 (57.73%), Query Frame = -1
Query:    9 FKLTLQFTEDYPNKPPTV---------------RFVSRMFHPNIYAD-GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSEN 251
            F++ +   E YP +PP V               +FV+R++HPNI +  G+ICLDIL+++W+    +  +L S+Q++LC P P+ P ++  A+ F  N
Sbjct:   70 FEIKVDIPEHYPFEPPKVTEIIFHIRAFEYIQAKFVTRIWHPNISSQTGTICLDILKDKWTASLTLRTVLLSLQAMLCSPEPSDPQDAVVAKQFINN 166          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UB12L_ARATH (Probable NEDD8-conjugating enzyme Ubc12-like OS=Arabidopsis thaliana GN=RCE2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.545e-11
Identity = 26/83 (31.33%), Postives = 50/83 (60.24%), Query Frame = -1
Query:    3 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKR 251
            F  + Q +  YP++ P V+  ++++HPNI  +G++CL+IL+  W P+ ++  ++  +  L  +PN   P N EAA +  +N +
Sbjct:   79 FVFSFQVSNMYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNYEDPLNHEAAAVLRDNPK 161          
The following BLAST results are available for this feature:
BLAST of CX308756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
UBCD4_DROME1.143e-1139.51Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophi... [more]
UBE2H_MOUSE1.492e-1137.50Ubiquitin-conjugating enzyme E2 H OS=Mus musculus ... [more]
UBE2H_HUMAN1.492e-1137.50Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens ... [more]
UBE2H_BOVIN1.492e-1137.50Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN... [more]
UBC8_SCHPO1.492e-1141.77Ubiquitin-conjugating enzyme E2 8 OS=Schizosacchar... [more]
RCE1_ARATH1.492e-1131.33NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thal... [more]
UBC14_SCHPO1.949e-1136.14Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccha... [more]
UBE2U_MACFA2.545e-1138.82Ubiquitin-conjugating enzyme E2 U OS=Macaca fascic... [more]
UBC21_CAEEL2.545e-1134.02Probable ubiquitin-conjugating enzyme E2 21 OS=Cae... [more]
UB12L_ARATH2.545e-1131.33Probable NEDD8-conjugating enzyme Ubc12-like OS=Ar... [more]

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Properties
Property NameValue
Genbank descriptionC21003E02Rv AbsLeaSub1 Citrus clementina cDNA clone C21003E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308756 ID=CX308756; Name=CX308756; organism=Citrus clementina; type=EST; length=251bp
TCTCTCTTATTCTCACTGAACAGCCGAGCTGCTTCAGAGTTTGCAGGAGA
GTTTGGATTTGGATCACAAAGCAGAGACTGAATAGAGGTCAGTATAGCTG
CAACATCATATATAGGACTCCACTGATTTTGTAAAATATCCAAACAAATA
CTTCCATCTGCATAGATATTTGGATGAAACATCCGTGAGACGAAACGAAC
TGTTGGGGGTTTATTTGGATAATCCTCTGTGAATTGTAGAGTCAACTTGA
A
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