CX308756

Overview
NameCX308756
Unique NameCX308756
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length251
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11755 contig Ccv1_Contig11755:335..585. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBE2S_DANRE (Ubiquitin-conjugating enzyme E2 S OS=Danio rerio GN=ube2s PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.342e-11
Identity = 29/81 (35.80%), Postives = 48/81 (59.26%), Query Frame = -1
Query:    9 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSEN 251
            F++ L   +D+P  PP   F++++FHPN+   G IC+++L+  W     +  +L +I+ LL  PNP S  N EA +L  E+
Sbjct:   60 FRMRLVLGKDFPAVPPRGYFLTKIFHPNVGHKGEICVNVLKRDWKAELGLRHVLLTIKCLLIHPNPESALNEEAGKLLLED 140          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UB2L6_RAT (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Rattus norvegicus GN=Ube2l6 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.670e-11
Identity = 29/82 (35.37%), Postives = 47/82 (57.32%), Query Frame = -1
Query:    9 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSEN 251
            F L + F  +YP KPPT+RF ++++HPNI  DG +CL ++  + W P      +L ++  L+  PN   P   E A L +++
Sbjct:   51 FGLRIDFPREYPLKPPTLRFTTKIYHPNISEDGLVCLPLISTENWKPYTKAYQVLEALNILVSRPNLEEPVRLELADLLTQD 132          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBE2U_HUMAN (Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens GN=UBE2U PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.406e-11
Identity = 32/85 (37.65%), Postives = 54/85 (63.53%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQN--QWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            F+LT+ FT +Y   PP V+F++  FHPN+    G  C+D L N  +W+  Y +++IL ++Q +L +P   +P N EAAR+  +++
Sbjct:   53 FQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDE 137          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBC1_MIMIV (Probable ubiquitin-conjugating enzyme E2 L460 OS=Acanthamoeba polyphaga mimivirus GN=UBC PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.406e-11
Identity = 32/83 (38.55%), Postives = 50/83 (60.24%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            F+L ++ + DYP   P V+F++ + H N+   G ICL+IL+   W+   ++ +I+ SI  LL  PNP  P NSE A L+  +K
Sbjct:   56 FELEIELSNDYPYSSPKVKFITPIQHMNVNDKGDICLNILKKDGWNASLNIISIIWSIIVLLDQPNPEDPFNSELASLYRNDK 138          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: COP10_ARATH (Constitutive photomorphogenesis protein 10 OS=Arabidopsis thaliana GN=COP10 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.672e-11
Identity = 30/78 (38.46%), Postives = 47/78 (60.26%), Query Frame = -1
Query:   18 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLF 251
            F L + F  DYP KPP + F +R++H N+   G + ++IL++ WSP   +  +L +I+S+   P P SPA    ARL+
Sbjct:   85 FFLDIIFPSDYPFKPPKLVFKTRIYHCNVDTAGDLSVNILRDSWSPALTITKVLQAIRSIFLKPEPYSPALPVIARLY 162          
The following BLAST results are available for this feature:
BLAST of CX308756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
UBE2S_DANRE4.342e-1135.80Ubiquitin-conjugating enzyme E2 S OS=Danio rerio G... [more]
UB2L6_RAT5.670e-1135.37Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Rattus... [more]
UBE2U_HUMAN7.406e-1137.65Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens ... [more]
UBC1_MIMIV7.406e-1138.55Probable ubiquitin-conjugating enzyme E2 L460 OS=A... [more]
COP10_ARATH9.672e-1138.46Constitutive photomorphogenesis protein 10 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionC21003E02Rv AbsLeaSub1 Citrus clementina cDNA clone C21003E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308756 ID=CX308756; Name=CX308756; organism=Citrus clementina; type=EST; length=251bp
TCTCTCTTATTCTCACTGAACAGCCGAGCTGCTTCAGAGTTTGCAGGAGA
GTTTGGATTTGGATCACAAAGCAGAGACTGAATAGAGGTCAGTATAGCTG
CAACATCATATATAGGACTCCACTGATTTTGTAAAATATCCAAACAAATA
CTTCCATCTGCATAGATATTTGGATGAAACATCCGTGAGACGAAACGAAC
TGTTGGGGGTTTATTTGGATAATCCTCTGTGAATTGTAGAGTCAACTTGA
A
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