CX308756

Overview
NameCX308756
Unique NameCX308756
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length251
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.986e-16
Identity = 37/82 (45.12%), Postives = 54/82 (65.85%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            FKL L   E+YP   P VRF+++++HPNI   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P +   A+ +  N+
Sbjct:   54 FKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNE 135          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.986e-16
Identity = 37/82 (45.12%), Postives = 54/82 (65.85%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            FKL L   E+YP   P VRF+++++HPNI   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P +   A+ +  N+
Sbjct:   54 FKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNE 135          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBC12_YEAST (NEDD8-conjugating enzyme UBC12 OS=Saccharomyces cerevisiae GN=UBC12 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.986e-16
Identity = 35/79 (44.30%), Postives = 52/79 (65.82%), Query Frame = -1
Query:    3 LQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKR 239
            L F E YP +PP V  + ++FHPNI   G++CL+IL+  WSP  D+ +I+T +  L  +PNPN P N +AA+L  E ++
Sbjct:   84 LDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEK 162          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.304e-15
Identity = 36/82 (43.90%), Postives = 54/82 (65.85%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            FKL L   E+YP   P VRF+++++HPN+   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+
Sbjct:   52 FKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKSNE 133          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBE2N_PONAB (Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.703e-15
Identity = 36/82 (43.90%), Postives = 54/82 (65.85%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            FKL L   E+YP   P VRF+++++HPN+   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+
Sbjct:   52 FKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNE 133          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.703e-15
Identity = 36/82 (43.90%), Postives = 54/82 (65.85%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            FKL L   E+YP   P VRF+++++HPN+   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+
Sbjct:   52 FKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNE 133          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.703e-15
Identity = 36/82 (43.90%), Postives = 54/82 (65.85%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            FKL L   E+YP   P VRF+++++HPN+   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+
Sbjct:   52 FKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNE 133          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBE2N_BOVIN (Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.703e-15
Identity = 36/82 (43.90%), Postives = 54/82 (65.85%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            FKL L   E+YP   P VRF+++++HPN+   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+
Sbjct:   52 FKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNE 133          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBC3_YEAST (Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharomyces cerevisiae GN=CDC34 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.703e-15
Identity = 40/93 (43.01%), Postives = 54/93 (58.06%), Query Frame = -1
Query:    9 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ------------WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSEN 251
            FK  ++F ED+P  PP  RF   ++HPN+Y DG +C+ IL               WSP+  V ++L SI SLL DPN NSPAN +AA  + +N
Sbjct:   60 FKAQMRFPEDFPFSPPQFRFTPAIYHPNVYRDGRLCISILHQSGDPMTDEPDAETWSPVQTVESVLISIVSLLEDPNINSPANVDAAVDYRKN 152          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: Y1A1_ENCCU (Probable ubiquitin-conjugating enzyme E2 ECU01_1010 OS=Encephalitozoon cuniculi GN=ECU01_1010 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.905e-15
Identity = 36/94 (38.30%), Postives = 59/94 (62.77%), Query Frame = -1
Query:    9 KLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSEN 248
            K  ++F   YP +PPT++FVS+MFHPNIY DG +C+ IL+              ++W+P+ ++  I+ SI  +L  PN +SPAN +A+ ++ +N
Sbjct:   86 KAVMKFPSSYPLRPPTLKFVSKMFHPNIYEDGKMCISILEEDKQQDSSVFGDPKDKWTPVQNIRTIVMSIVVILNSPNISSPANVDASVMYRDN 179          
The following BLAST results are available for this feature:
BLAST of CX308756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
UBC36_ARATH9.986e-1645.12Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]
UBC35_ARATH9.986e-1645.12Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UBC12_YEAST9.986e-1644.30NEDD8-conjugating enzyme UBC12 OS=Saccharomyces ce... [more]
UBE2N_RAT1.304e-1543.90Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBE2N_PONAB1.703e-1543.90Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii ... [more]
UBE2N_MOUSE1.703e-1543.90Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ... [more]
UBE2N_HUMAN1.703e-1543.90Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]
UBE2N_BOVIN1.703e-1543.90Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN... [more]
UBC3_YEAST1.703e-1543.01Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharo... [more]
Y1A1_ENCCU2.905e-1538.30Probable ubiquitin-conjugating enzyme E2 ECU01_101... [more]

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Properties
Property NameValue
Genbank descriptionC21003E02Rv AbsLeaSub1 Citrus clementina cDNA clone C21003E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308756 ID=CX308756; Name=CX308756; organism=Citrus clementina; type=EST; length=251bp
TCTCTCTTATTCTCACTGAACAGCCGAGCTGCTTCAGAGTTTGCAGGAGA
GTTTGGATTTGGATCACAAAGCAGAGACTGAATAGAGGTCAGTATAGCTG
CAACATCATATATAGGACTCCACTGATTTTGTAAAATATCCAAACAAATA
CTTCCATCTGCATAGATATTTGGATGAAACATCCGTGAGACGAAACGAAC
TGTTGGGGGTTTATTTGGATAATCCTCTGTGAATTGTAGAGTCAACTTGA
A
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