CX308789

Overview
NameCX308789
Unique NameCX308789
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length655
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4247 contig Ccv1_Contig4247:373..1027. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: ARR19_ARATH (Putative two-component response regulator ARR19 OS=Arabidopsis thaliana GN=ARR19 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 6.101e-29
Identity = 79/233 (33.91%), Postives = 122/233 (52.36%), Query Frame = -2
Query:    1 QFPAGLRVLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR---------------WNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEGTFKAQRKRISAKEEDDGELESDDPSTTKKPRVVWSVELHQQFVSAVNQL-GIDKA 651
            QFP    VLVVD + T    ++Q++++  Y V+  + A  AL  L   K   ++V+ D HMP +DG + L+ I  ++DLPV++MS D +  +VM+   +GACDY++KP++EE + NIWQH+VRKR               W+E  +   S  L  TD    G D   + S    G  G    ++K+                   +KPR+ W+ ELHQ+F+ A+  + GI+KA
Sbjct:   29 QFPGNTNVLVVDTNFTTLLNMKQIMKQYAYQVSIETDAEKALAFLTSCKHEINIVIWDFHMPGIDGLQALKSITSKLDLPVVIMSDDNQTESVMKATFYGACDYVVKPVKEEVMANIWQHIVRKRLIFKPDVAPPKPRMTWSEVFQPVQS-HLVPTD----GLDRDHFDSITINGGNGIQNMEKKQ---------------GKKPRKPRMTWTEELHQKFLEAIEIIGGIEKA 241          
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: ARR20_ARATH (Putative two-component response regulator ARR20 OS=Arabidopsis thaliana GN=ARR20 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.092e-25
Identity = 70/214 (32.71%), Postives = 114/214 (53.27%), Query Frame = -2
Query:    1 RVLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNEN--KEHENSGSLEETDHHKRGSDEIEYASSVNEGTEGTFKAQRKRISAKEEDDGELESDDPSTTKKPRVVWSVELHQQFVSAVNQLG-IDKA 633
            RVL+V  D      L+ ++ +  Y VT       A+  L + K   D+V+ D HMPD++G   L  IG +MDLPV++MS + +   VM  I++GACD+L+KP+ +E +  +W+HV RKR +++   +   SG++E         ++     S  EG++ T                    ++ S TKKPR+ W+ ELH +F  AV ++G ++KA
Sbjct:   42 RVLLVGADSNSS--LKNLMTQYSYQVTKYESGEEAMAFLMKNKHEIDLVIWDFHMPDINGLDALNIIGKQMDLPVVIMSHEYKKETVMESIKYGACDFLVKPVSKEVIAVLWRHVYRKRMSKSGLDKPGESGTVESDPDEYDDLEQDNLYESNEEGSKNTCD----------------HKEEKSPTKKPRMQWTPELHHKFEVAVEKMGSLEKA 237          
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: APRR9_ARATH (Two-component response regulator-like APRR9 OS=Arabidopsis thaliana GN=APRR9 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.114e-22
Identity = 55/149 (36.91%), Postives = 90/149 (60.40%), Query Frame = -2
Query:  202 LRVLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLL----EHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDE 636
            LRVL+V+ D +  +I+  +LR+C Y V   S    A  +L+E+    D++L+++ +P + GF LL    EH   + ++PVIMMS+   +  V++ +  GA DYLIKP+R+ ELKN+WQHV R+    +    ++ SL  + H+   +DE
Sbjct:   37 LRVLLVESDYSTRQIITALLRKCCYKVVAVSDGLAAWEVLKEKSHNIDLILTELDLPSISGFALLALVMEHEACK-NIPVIMMSSQDSIKMVLKCMLRGAADYLIKPMRKNELKNLWQHVWRRLTLRDDPTAHAQSLPASQHNLEDTDE 184          
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: PRR73_ORYSJ (Two-component response regulator-like PRR73 OS=Oryza sativa subsp. japonica GN=PRR73 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.682e-21
Identity = 62/192 (32.29%), Postives = 96/192 (50.00%), Query Frame = -2
Query:   70 LRVLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM---DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEGTFKAQRKRISAKEEDDGELESDDPSTTKKPR 636
            LRVL+V++D +  +++  +LR+C Y V        A   L + +   D+VL++V MP + G  LL  I       D+PVIMMS++  +  V + +  GA D+L+KPIR+ ELKN+WQHV R+  + +     SG   +     +  DE E  S  N   E             ++DD + + DD S     R
Sbjct:   81 LRVLLVENDDSTRQVVSALLRKCCYEVIPAENGLHAWQCLEDLQNHIDLVLTEVVMPRLSGIGLLSKITSHKICKDIPVIMMSSNDSMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGIRTQKCTKPKVDDEYENNSGSNNDNE-------------DDDDNDEDDDDLSVGHNAR 259          
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: PRR73_ORYSI (Two-component response regulator-like PRR73 OS=Oryza sativa subsp. indica GN=PRR73 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 4.682e-21
Identity = 62/192 (32.29%), Postives = 96/192 (50.00%), Query Frame = -2
Query:   70 LRVLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM---DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEGTFKAQRKRISAKEEDDGELESDDPSTTKKPR 636
            LRVL+V++D +  +++  +LR+C Y V        A   L + +   D+VL++V MP + G  LL  I       D+PVIMMS++  +  V + +  GA D+L+KPIR+ ELKN+WQHV R+  + +     SG   +     +  DE E  S  N   E             ++DD + + DD S     R
Sbjct:   81 LRVLLVENDDSTRQVVSALLRKCCYEVIPAENGLHAWQCLEDLQNHIDLVLTEVVMPRLSGIGLLSKITSHKICKDIPVIMMSSNDSMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGIRTQKCTKPKVDDEYENNSGSNNDNE-------------DDDDNDEDDDDLSVGHNAR 259          
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: PRR95_ORYSJ (Two-component response regulator-like PRR95 OS=Oryza sativa subsp. japonica GN=PRR95 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.115e-21
Identity = 67/194 (34.54%), Postives = 106/194 (54.64%), Query Frame = -2
Query:   85 LRVLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMD----LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNEN----KEHENSGSLEETDHHKRGSDEIEYASS--VNEGTEGTFKAQRKRISAKEEDDGELESDDPST 636
            +RVL+ + D +   I+  +LR+C Y V   S    A +IL+E+    D+VL++V +P M GF LL  I +E D    +PVIMMS++  VS V + +  GA D+L+KPIR+ EL+N+WQHV RK+ +      +  +   +L E    K G  + E+ +   V++  E + +    + S       ELE+D   T
Sbjct:   43 VRVLLAEGDDSTRHIICALLRKCGYRVAAASDGVKAWDILKEKSFNIDLVLTEVELPLMSGFLLLSTI-MEHDACKNIPVIMMSSNDSVSMVFKCMLKGAADFLVKPIRKNELRNLWQHVWRKQLSSGVLDVQHTQQEDNLTERHEQKTGVTKAEHVTENVVHKNMECSEQESDAQSSCTR---SELEADSRQT 232          
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: APRR3_ARATH (Two-component response regulator-like APRR3 OS=Arabidopsis thaliana GN=APRR3 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.115e-21
Identity = 70/219 (31.96%), Postives = 111/219 (50.68%), Query Frame = -2
Query:   13 LRVLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGF----KLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEGTFKAQRKRISAK----EEDDGELES---DDPSTTKKPRVVWSVELHQQFVSAVNQLG 636
            L+VL+V++D +   I+  +L+ C Y VT       A  IL + K C D+VL++V MP   G     K++ H  L+ ++PVIMMS+   +  V + + +GA D+L+KPIR+ ELKN+WQHV R+       H +SGS  E+  H + S  ++  S+     + +   + +  S         DG  ++      S TK+     S     QF  A N+ G
Sbjct:   64 LKVLLVENDDSTRHIVTALLKNCSYEVTAVPDVLEAWRILEDEKSCIDLVLTEVDMPVHSGTGLLSKIMSHKTLK-NIPVIMMSSHDSMVLVFKCLSNGAVDFLVKPIRKNELKNLWQHVWRRC------HSSSGSGSESGIHDKKS--VKPESTQGSENDASISDEHRNESGSSGGLSNQDGGSDNGSGTQSSWTKRASDTKSTSPSNQFPDAPNKKG 273          
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: PRR37_ORYSI (Two-component response regulator-like PRR37 OS=Oryza sativa subsp. indica GN=PRR37 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.964e-20
Identity = 52/157 (33.12%), Postives = 85/157 (54.14%), Query Frame = -2
Query:  175 LRVLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNE 636
            ++VL+VD D +  +++  +LR C+Y V        A   L + +   D+VL++V MP + G  LL  I    +  ++PVIMMS++  +  V + +  GA D+L+KPIR+ ELKN+WQHV R+  + +     SG   +     +  DE    S  N+
Sbjct:   62 IKVLLVDSDDSTRQVVSALLRHCMYEVIPAENGQQAWTYLEDMQNSIDLVLTEVVMPGVSGISLLSRIMNHNICKNIPVIMMSSNDAMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGIQTQKCAKSKSGDESNNNSGSND 218          
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: PRR37_ORYSJ (Two-component response regulator-like PRR37 OS=Oryza sativa subsp. japonica GN=PRR37 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.830e-20
Identity = 51/157 (32.48%), Postives = 85/157 (54.14%), Query Frame = -2
Query:  175 LRVLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNE 636
            ++VL+VD D +  +++  +LR C+Y V        A   L + +   D+VL++V MP + G  LL  I    +  ++PVIMMS++  +  V + +  GA D+L+KPIR+ ELKN+WQHV R+  + +     SG   +     +  DE    +  N+
Sbjct:   62 IKVLLVDSDDSTRQVVSALLRHCMYEVIPAENGQQAWTYLEDMQNSIDLVLTEVVMPGVSGISLLSRIMNHNICKNIPVIMMSSNDAMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGIQTQKCAKSKSGDESNNNNGSND 218          
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: APRR5_ARATH (Two-component response regulator-like APRR5 OS=Arabidopsis thaliana GN=APRR5 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 9.762e-19
Identity = 52/159 (32.70%), Postives = 87/159 (54.72%), Query Frame = -2
Query:  199 LRVLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL----PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR---------WNENKEHENSGSLEETDHHKRGSDEI 636
            LRVL+V+ D +  +I+  +LR+C Y V        A  +L+ +    D++L++V +P + G+ LL  I +E D+    PVIMMS    V+ V + +  GA DYL+KP+R  EL+N+WQHV R++         WNE+   + +      + + +  D +
Sbjct:   50 LRVLLVEADDSTRQIIAALLRKCSYRVAAVPDGLKAWEMLKGKPESVDLILTEVDLPSISGYALLTLI-MEHDICKNIPVIMMSTQDSVNTVYKCMLKGAADYLVKPLRRNELRNLWQHVWRRQTSLAPDSFPWNESVGQQKAEGASANNSNGKRDDHV 207          
The following BLAST results are available for this feature:
BLAST of CX308789 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
ARR19_ARATH6.101e-2933.91Putative two-component response regulator ARR19 OS... [more]
ARR20_ARATH4.092e-2532.71Putative two-component response regulator ARR20 OS... [more]
APRR9_ARATH1.114e-2236.91Two-component response regulator-like APRR9 OS=Ara... [more]
PRR73_ORYSJ4.682e-2132.29Two-component response regulator-like PRR73 OS=Ory... [more]
PRR73_ORYSI4.682e-2132.29Two-component response regulator-like PRR73 OS=Ory... [more]
PRR95_ORYSJ6.115e-2134.54Two-component response regulator-like PRR95 OS=Ory... [more]
APRR3_ARATH6.115e-2131.96Two-component response regulator-like APRR3 OS=Ara... [more]
PRR37_ORYSI3.964e-2033.12Two-component response regulator-like PRR37 OS=Ory... [more]
PRR37_ORYSJ8.830e-2032.48Two-component response regulator-like PRR37 OS=Ory... [more]
APRR5_ARATH9.762e-1932.70Two-component response regulator-like APRR5 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC21003G12Rv AbsLeaSub1 Citrus clementina cDNA clone C21003G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308789 ID=CX308789; Name=CX308789; organism=Citrus clementina; type=EST; length=655bp
AGCCTTATCAATCCCAAGCTGATTTACAGCACTGACAAATTGCTGATGTA
GCTCTACTGACCACACTACACGTGGTTTCTTTGTCGTGGAAGGATCATCG
CTTTCCAGTTCACCATCATCTTCTTCTTTAGCACTAATCCTCTTTCTCTG
AGCTTTAAATGTTCCTTCTGTTCCTTCGTTAACAGAAGAAGCATATTCAA
TTTCATCACTTCCTCTTTTATGATGATCAGTTTCTTCCAAGCTGCCAGAA
TTTTCATGTTCTTTATTTTCATTCCACCTTTTCCGAACAACATGCTGCCA
TATATTCTTAAGCTCCTCTTCACGTATAGGCTTAATCAAGTAATCACAAG
CTCCATGTCTAATTCCCCTCATAACAGCAGATACCCTTCCATCAGCTGAC
ATCATGATAACAGGAAGATCCATTTCAAGTCCAATATGTTCAAGAAGTTT
GAAGCCATCCATATCAGGCATGTGAACGTCACTTAACACCACATCAAAAC
AGCCCTTCCTCTCCCGTAGAATATTCAAAGCAACAGCTGCCTGGGAGCAT
GTAGTTACGTTGTAGAGGCATCGACGAAGCATCTGCTCGAGAATTCGCAN
GACAGTAATGTCATCGTCAACAACAAGAACCCTTAGTCCAGCAGGAAACT
GATCA
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